BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23360.1
Length=2897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932330 jgi|Araly1|932330|scaffold_400318.1 2531 0.0
> Ahg932330 jgi|Araly1|932330|scaffold_400318.1
Length=2703
Score = 2531 bits (1370), Expect = 0.0
Identities = 1590/1696 (94%), Gaps = 16/1696 (1%)
Strand=Plus/Plus
Query 1115 ACAAACATTG-AGCCAAGCAGGAGTAGCAATGTGTCACATGAAGTCTCTCTTGCATCCGT 1173
|||||||||| |||| ||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1014 ACAAACATTGAAGCCTAGCCGAAGTAGCAATGTGTCCCATGAAGTCTCTCTTGCATCCGT 1073
Query 1174 AACAGAGTTTGACAATGATGATAAAGTTAGCTGTGCCGATTCCTGGGCTTCTGCTTTACT 1233
| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1074 ATCAGAGTTTGAAAATGATGATAAAGTTAGCTGTGCCGATTCCTGGGCTTGTGCTTTACT 1133
Query 1234 TTCAGAGTTGGACAATTTCAAGAACAAGAAGGAAATGGGCA-CGAGTTTGGTTGGAACCC 1292
||| ||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 1134 TTCTGAGCTGGACAATTTCAAGAACAAGAAGCAAATGGG-ATCGAGTTTGGTTGGAACCC 1192
Query 1293 CTAAAGCTGCAGAGATGAAACTAATGGATGATTTTGCTGAAATGGAGAAGCTTGCAATGG 1352
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CTAAAGCTTCAGAGATGAAACTAATGGATGATTTTGCTGAAATGGAGAAGCTTGCAATGG 1252
Query 1353 TTGCTAGTACAATCGATAACCGACCTGGAAGTTCTCCTATTTGTTCTTCTGATTCTATTT 1412
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1253 TTGCAAGTACAATCGATAACCGACCTGGAAGTTCTCCTATTTGTCCTTCTGATTCCATTT 1312
Query 1413 CAGCTACTGGTCCGGTAGAGAACGAATCTAATGAGAATTCATCAGAAGCAACTAAAACTT 1472
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1313 CAGCTACTGGTCCGGTAGAGAACGAATCTAATGAGAATTCATCAGAGGTAACTAAAACTC 1372
Query 1473 CTGGAACAGTTTATTCATTGAATCCTGATGCATCTCCCAAAGATGATATCAAGTCAGATT 1532
||||||||| ||||||||| ||||||| ||| ||||| ||||| || | ||||||||||
Sbjct 1373 CTGGAACAGATTATTCATTAAATCCTGCCGCAGCTCCCCAAGAT-AT-T-AAGTCAGATT 1429
Query 1533 CGTTACCTCAATCTCTTCATATAGTCTTGAAAGCGGTAATGGAGCATAAGCATATCACGC 1592
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1430 CGTTACCTCAATCTCTTCATATCGTCTTGAAAGCGGTAATGGAGCATAAGCGTATCACGC 1489
Query 1593 AGAGAAACACTGATGAAGTACTTGAAGATATCAGAAAAGCTCTGTCAAGTGTAAACCATT 1652
| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1490 ACAAAAACACTGATGAAGTACTTGAAGATATCAGGAAAGCTCTGTCAAGTGTTAACCATT 1549
Query 1653 CAAGCTTTTC--T-ACAAACCATCAGGAGACTAAGACTCTTACTGTGGAGGATAGACTGG 1709
|||||||||| | | ||| || ||||||| |||||| | ||||||||||||||||| |
Sbjct 1550 CAAGCTTTTCTGTGAAAAATCACCAGGAGAAAAAGACTATCACTGTGGAGGATAGACTAG 1609
Query 1710 ATATGGAGTGTAATATCAGCAAATCAATTCACAGAATCATTGACGTTATCGAGGGAGTCA 1769
||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 1610 ATATGGAGTGTAATATCAGCAAATCGATTCACAGAATCATTGAAATTATTGAGGGAGTCA 1669
Query 1770 GTCTTAAAGATGAGAGGCATGTGTCCAACAGAGAATCAGAAAGGCTTTCAGGTTACACTG 1829
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1670 ATCTAAAAGATGAGAGGCATGTGTCCAACGGAGAATCAGAAAGGCTTTCAGGTTACACTG 1729
Query 1830 CTCGCGTCTTGCAATGGAAAACTACAGAGCTAAGTAGTGTATTGCAGCGATTTCTTCAAG 1889
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1730 CTCGCGTCTTGCAATGGAAAACTACAGAGCTAAGTAGTGTGTTGCAGCGATTTCTTCAAA 1789
Query 1890 CTTGTTACGATCTATTAGACAGAAAAGCAGACATGAAGAAGTTTGCTCAAGAGCTAAGCT 1949
||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1790 CTTGTTACGATCTGTTAGACAGAAAAGCAGACATGAAGAAGTTCGGGCAAGAGCTAAGCT 1849
Query 1950 CTGTGTTGGAATGGATGGTGAACCACTGTTTTTCTCTTCAAGATGTTTCAACCATGAGAG 2009
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CTGTGTTGGAATGGATGACGAACCACTGTTTTTCTCTTCAAGATGTTTCAACCATGAGAG 1909
Query 2010 ATGAGATTAAGAAGCAGTTCGAGTGGGATGAATCACGGAGCGGAAGCGAAGTTGATATTG 2069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 ATGAGATTAAGAAGCAGTTCGAGTGGGATGAATCACGGAGCGGAAGCGAAGTTGATATTG 1969
Query 2070 GAATATTTCGTCAGGTTTCAGAAGCAGAGAAGCTT-AGAACGGAAGATGTTTCCTTTTTG 2128
||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||||
Sbjct 1970 GAATATTTCGTCAGGTTTCAGAAGCAGAGAATCTTAAG-ACAGAAGATGTTTCCTTTTTG 2028
Query 2129 GCTTGCAAAGATCAGTTGATTGAAGACAAACCTGGTAATCAAAACTTGTCGCGCAAAACG 2188
|||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||
Sbjct 2029 GCTTGCAAAGATCAGTTGATTGAAGACAAACCTGGTAATCAAAAGTTGTTGAGCAACCCG 2088
Query 2189 GTTGAAGAAGAGGCAAATGACAAAACAGCGAGTGCTTCAGAGAACGAGCTCAAGCTGGAG 2248
|| |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||
Sbjct 2089 GTCGAAGAAGAGGCAAAGGACAAGAGATCGAGTGCTTCAGAGAACGAGCTCAAGCTGGAG 2148
Query 2249 GAAAAACAAAACATGCGAACCGAATTGGAAATCGCTGCTGCTTCAGAAAAGTTGGCCGAG 2308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2149 GAAAAACAAAACATGCGAACCGAATTGGAAATCGCTGCTGCTTCAGAAAAGTTGGCGGAG 2208
Query 2309 TGTCAAGAGACGATTCTAAACCTGGGAAAGCAGCTCAAGGCATTGACTAACTC-AAAGGA 2367
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 2209 TGTCAAGAGACGATTCTAAACCTGGGAAAGCAGCTCAAGGCATTAACTAACTCGAAAGAA 2268
Query 2368 A--ACAGCTTTACTTTCAGAAACACTCATGTAC-GACGTTACAGACAAATCGAACAACCT 2424
| ||||||||||||||||||| ||| |||| | ||| |||| |||||||| |||| ||
Sbjct 2269 AGTACAGCTTTACTTTCAGAAAAACTGATGT-CTGACCTTACCGACAAATCAAACATTCT 2327
Query 2425 ACCTGATGCACAACCTTCACATGAGACTACTAAACCAGAGAAGAGATTGACCAGCCAGAG 2484
| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2328 AGCTGGTGCACAACCTTCACAAGAGACTACTAAACCAGAGAAGAGATTGACCAGCCAGAG 2387
Query 2485 ATCATCTCTTTTGGATCAGATGAAGGCAGAAGATCACAACACCGGGGAATCCAAGGATCA 2544
|||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2388 ATCATCTCTTCTGGACCAGATGAAGGCAGAAGATCACAACACCGGGGAATCTAAGGATCA 2447
Query 2545 GAAACCGCAAGCAGCAGATAAAAACGGAAAGGGAGGAAACAGCTCTGTTTACAATGAAAC 2604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2448 GAAACCGCAAGCAGCAGATAAAAACGGAAAGGGAGGAAACAGTTCTGTTTACAATGAAAC 2507
Query 2605 CATTGAGGCACTAGAACAGATTCTTCTCTCAGACAAAAGCAAAGGCTCCGACTCAAACTG 2664
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508 CATTGAGGCATTGGAACAGATTCTTCTCTCAGACAAAAGCAAAGGCTCCGACTCAAACTG 2567
Query 2665 CTTTGCCATTGTTCCTCAGAAAAAGACCGGCGGAGTTAAGAGCCTCTGGAGAAAGCTGTT 2724
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2568 CTTCGCCATTGTTCCTCAGAAAAAGAGCGGCGGAGTTAAGAGCCTCTGGAGAAAGCTGTT 2627
Query 2725 GGGGAGAAATAAGAAAGGTAAGAGCAAGAAGGTCCCTAATCCATTTGCCAACTAAGAAGA 2784
||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2628 GGGGAGAAACAAGAAAAGTAAGGGCAAGAAGATCCCTAATCCATTTGCCAACTAAGAAGA 2687
Query 2785 TGGTGGCATCTGTCAT 2800
||||| ||||||||||
Sbjct 2688 TGGTGTCATCTGTCAT 2703
Score = 1604 bits (868), Expect = 0.0
Identities = 965/1011 (95%), Gaps = 10/1011 (1%)
Strand=Plus/Plus
Query 63 TGGCTTGTTGGAGGTAATAAATGGACCATAAAGCATGGCCTTGGAAGAAGAAATCAATGG 122
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3 TGGCTTG-TGGAGGTAATAAATGGACCATAAAGGATGGCCTTGGAAGAAGAAATCAATGG 61
Query 123 AGAAAACCGTTGTTGAAAGCAAT-----G---GAG-AGGTTGTGGCTGACAAGATAGAGC 173
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 62 AGAAAACCGTTGTTGAAAGCAATGGAGAGACTGAGAAGGTTGTGGCTGACAAGATAGAGC 121
Query 174 TGGAACATCGCGTGAAAAGTCTAAATGATAAGCTTAACTCTGTGGAGGCTGAGAGCAATA 233
||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 122 TGGAAAATCGCGTGAAAAGTCTAAATGATAAGCTTACCTCTGTCGAGGCTGAGAGCAATA 181
Query 234 AGCATGAGACTGAGGCGCAAGAAGCAATTGTTGGCTGGGAGAAGACAAAAGCTGAAGTAG 293
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 182 AGCATGAGACTGAGGCGCAAGAAGCAATTGTTGGTTGGGAGAAGACAAAAGCTGAAGTAG 241
Query 294 CATCTCTCAAAAAGAAACTTGATGAAGCTTTGAATGAAAAACACAGGAGTGAGGAAAGGT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CATCTCTCAAAAAGAAACTTGATGAAGCTTTGAATGAAAAACACAGGAGTGAGGAAAGGT 301
Query 354 CGAGTCACACGGATGCTGGTCTAAAAGAATGTGTGCAGCAGCTTCGTTTTGTTCGTGAGG 413
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 302 CGAGTCACACGGATGCTGGTCTAAAAGAATGTATGCAACAGCTTCGTTTTGTTCGTGAGG 361
Query 414 AGCAGGAGCGAAGGATGCATGATGCTTTGACAAAAGCATCACAGGAGTACGAACGGCGAT 473
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 362 AGCAGGAGAGAAGGATGCATGATGCTTTGACAAAAGCATCACAGGAGTACGAACAGCGAT 421
Query 474 TGATTGTTATAAAGACGGAATTGGCAGGTAGTGGTAAGAGGCTTGCTGAAGCAGAAGGCG 533
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
Sbjct 422 TGATTGTTATAAAGACGGAATTGGCAGGTACTAGTAAGAGGCTTGCAGAAGCAGAAGGTG 481
Query 534 AGAATGCTCAACTCTCAAAGGCTTTGTTAGCAAAGAACAAAACTGTTGAAGATTTAAACA 593
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AGAACGCTCAACTCTCAATGGCTTTGTTAGCAAAGAACAAAACTGTTGAAGATTTAAACA 541
Query 594 GAGAGAGGGACCGTATAGAGGTTGATTTCAATTCTTTGGTGAGTAGTTTAGAGTCGAAAG 653
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 542 GAGTGAGGGATCGTATCGAGGTTGATTTCAATTCTTTGGTGAGTAGTTTAGAGTCCAAGG 601
Query 654 AGAAAGAAAACGTTTCATTGAGATATGAAGTTCGAGTGCTGGAGAAAGAGCTCGAGCTTC 713
||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||
Sbjct 602 AGAAAGAAAACGTTTCACTGAGATATGAAGTCCGAGTGCTGGAGAAAGAGCTTGAGCTTC 661
Query 714 GGAATGAAGAGAGAGAGTTTAGCCGTCGAACTGCTGAAGCATCGCATAAACTGCACTTAG 773
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 662 GGAATGAAGAGAGAGAGTTTAGACGTCGAACCGCTGAAGCATCTCATAAACTGCACTTAG 721
Query 774 AGAATGTGAAGAAAGTTGCAAAGTTAGAATCAGAGTGTCAAAGGTTACGGGTTCTGGTCA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGAATGTGAAGAAAGTTGCAAAGTTAGAATCAGAGTGTCAAAGGTTACGGGTTCTGGTCA 781
Query 834 GGAAACGGTTACCAGGACCCGCTGCTCTTTCTAAAATGAGCAATGAAGTAGAGATGTTGG 893
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 782 GGAAACGGTTACCAGGACCCGCTGCTCTGTCTAAAATGAGGAATGAAGTAGAGATGTTGG 841
Query 894 GAAGGAGAAGGGTCAATGGAAGCCCTCATAGTCCGATGATTGATTCCGAAAAAATCAATA 953
|||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 842 GAAGAAGAAGGGTCAATGGAAGCCCTAACAGTCCGATGATTGATTCCGAAAAAATCAATA 901
Query 954 ACCTTACTGAACAATTATGCTTACTGGAAGAAGAGAACAAAACTCTAAGGGAAGCCTTAA 1013
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 902 ACCTCACTGAGCAATTATGCTTACTGGAAGAAGAGAACAAAACTCTGAGGGAAGCCTTAA 961
Query 1014 ACAAGAAAGTCAGTGAGCTTCAGTTCTCGAGAAATATGTATTCTCGAACAG 1064
||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 962 ACAAGAAAGTCAGTGAGCTTCAGTTTTCAAGAAATATGTATTCTCGAACAG 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109357093395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5