BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23370.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481207 jgi|Araly1|481207|fgenesh2_kg.4__267__AT2G23370.1 1832 0.0
> Ahg481207 jgi|Araly1|481207|fgenesh2_kg.4__267__AT2G23370.1
Length=1275
Score = 1832 bits (992), Expect = 0.0
Identities = 1186/1278 (93%), Gaps = 20/1278 (2%)
Strand=Plus/Plus
Query 31 TCTCATCGGACGAGAAACAGTACGGCGATCGG-AAAAC-TCTGAGATGCATCGCGGCGCG 88
|||||||||| ||||||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct 1 TCTCATCGGAAGAGAAACAGTACGGCGATCGGAAAAACTTCCAAGATGAATTGCGGCGCG 60
Query 89 GCGGTTTTCGGACGGAAACGTAGACTGATACTTCTCCATGGCA-GCAGAAACTTCGCCAG 147
||||||| |||||||||||| || |||||||||| | | | | |||||||||| ||||
Sbjct 61 GCGGTTTACGGACGGAAACGCGGATTGATACTTCTTCGT-GTAGGCAGAAACTTTTCCAG 119
Query 148 ATCCTTTTGCTCTTCTTC-T-T-CACTATCTGAACATGAATGTTTCATTAAGGATATAGC 204
|||||||||||||||||| | | || |||||| ||||||||| ||||| |||||||||||
Sbjct 120 ATCCTTTTGCTCTTCTTCTTCTCCATTATCTGGACATGAATGCTTCATCAAGGATATAGC 179
Query 205 AAAAGCTCAGCCTCCTAAGCATCTGATGCAGCTGCTGAATATATTCACAGCTAGAGGTAA 264
|||||||||||||||||||||||||| |||||||||||| |||||||||| || ||||||
Sbjct 180 AAAAGCTCAGCCTCCTAAGCATCTGACGCAGCTGCTGAACATATTCACAGTTAAAGGTAA 239
Query 265 ATCCATAGTTTCTCCTGGTGCCAAGCAAGGCTTGTTACCTCTTACTATTCCGTTGGTGAA 324
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 ATCCATAGTTTCTCCTGGTGCCAAGAAAGGCTTGTTACCTCTTACTATTCCGTTGGTGCG 299
Query 325 AATGAGCCCGGGTTCTTCAATTGCTCTATTACGGTGGCCAACAGCTCCTTCTAGTATGGA 384
|||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 300 AATGGGCCCGGGTTCTACAATTGCTCTACTACGGTGGCCAACAGCTCCTCCTAGTATGGA 359
Query 385 GATGCCTGTGGTGGAAGTTCAGAAACATGGGGTTTGGTTTCTAGCTAATAATGTTGATCA 444
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GATGCCTGTGGTGGAAGTTCAGAAACATGGGGTTTGGTTTCTAGCCAATAATGTTGATCA 419
Query 445 GTTCATTCACAGAATATTGGTGGAAGAAGATGTTTCCAAACCCGAAGAATGCAGCCAAGA 504
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 420 GTTCATTCACAGAATATTGGTGGAAGAAGATGTTTCTAAACCCGAAGAATCCAGTCAAGA 479
Query 505 AATCTTCAATGCTGCT-GGTGAAGCTGGGAAGAAACTTTACAGTAAGGGTGACTTTGCCA 563
|||| ||||||||| | |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 480 AATCCTCAATGCTG-TAGGTGAAGCTGGGGTGAAACTTTACAGTAAGGGTGACTTCGCCA 538
Query 564 GTTCAAGACTGATGGATTTAGATGCCTATCTTTTAAGAAAGGTTGGATTGTTTCCAGATT 623
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 539 GTTCAAGACTGATGGATTTAGATGCCTATCTTTTAAGAAAGGTTGGACTGTTTCCGGATT 598
Query 624 CTCTTGAACG-AAAAGTTATTCGGCATATCGAGAATGGAGACCATGTTTCAGCTTTGGTG 682
|||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 CTCTAGAACGTAAAA-TTATTCGACATATCGAGAATGGAGACCATGTTTCAGCTTTGGTG 657
Query 683 GCTACCGAGTTTTATACAAAGAGAGGGAACTTTCCCGGATTTGCCCGGCCATTCGCTTTC 742
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 658 GCTACCGAGTTTTATACAAAGAGAGGGAACTTTCCCGGATTTGCCCGGCCGTTTGCTTTC 717
Query 743 AACGCAAAAGTTTTACTGAAACTTGGGCGTAACTTAGAAGCGAAAGACGCAGCTAGGGGT 802
|| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 AATGCAAAGGTTTTGTTGAAACTTGGGCGTAGCTTAGAAGCGAAAGACGCAGCTAGGGGT 777
Query 803 GCTTTGAAATCTTCGTGGTGGACCTTAGGATGCAGATATGAGGAAATTGCTCAAATAGCA 862
||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 778 GCTTTGAAATCTTCGTGGTGGACCTTAGGATACAGATACGAGGAAATTGCTCGAATAGCA 837
Query 863 GAGTGGGGAGAAGAGCAAATTGCGCAGTATAAGGAGAGAGTTACAGGAGAAGGAAAACAA 922
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 838 GAGTGGGGAGATGAGCAAATTGCGCAGTATAAGGATAGAGTTACAGGAGAAGGAAAACAA 897
Query 923 CGGGATATAGACAGGGGAAAGCCAATGGCTCAGGCATCTTTGGACGAGGCTGCGTTCTTA 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGGGATATAGACAGGGGAAAGCCAATGGCTCAGGCATCTTTGGACGAGGCTGCGTTCTTA 957
Query 983 CTGAATCTAGCGTCACTTGAAGGGACATGGGACGAATCACTGGAACGGGTTGCTCAGTGC 1042
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 958 CTGAATCTAGCGTCACTTGAAGGGACATGGGACGAATCACTGGATCGGGTTGCTCAATGC 1017
Query 1043 TACAAGGAAGCTGGACTTAACGACATCGCCAAGTTTGTTCTGTACAGAGATTGAGAAGTC 1102
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||
Sbjct 1018 TACAAGGAAGCTGGACTTAATGATATCGCCAAGTTTGTTCTATACAGAGATTGAGAAATC 1077
Query 1103 TCTTTTAAAGGCCACAAT-TT----GTTC-TT-TT-GAGACCTGAGATGACATTATATCA 1154
||||||||||||||||| || ||| || || || ||||||||| |||||||||||
Sbjct 1078 TCTTTTAAAGGCCACAAAATTAACAGTTTATTCTTTGAAACCTGAGATAACATTATATCA 1137
Query 1155 AATGATCTTATGCATTTAGTGTCTACGTTGAAGATTTACATTAACCCTGCTAAAGATTCA 1214
||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1138 AATGATCTT-TGCATTTGGTGTCTACATTGAAGATTTACATTAACCCTGCTAAAGAGTCA 1196
Query 1215 TTGGGTCAAGATTACTGATTGTATCCTTTCTGAGACTAAAAGTGGAATAAAGCAGAATGA 1274
|||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||
Sbjct 1197 TTGGGTCAAGATTACTGATTGTTTCGTTTCTGAGACTAAAAGTGAAATAAAACAGAATGA 1256
Query 1275 TCATCTTATAGAGTAATA 1292
||||||||| | ||||||
Sbjct 1257 TCATCTTATTGGGTAATA 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5