BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23380.1
Length=2968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481208 jgi|Araly1|481208|fgenesh2_kg.4__268__AT2G23380.1 4630 0.0
> Ahg481208 jgi|Araly1|481208|fgenesh2_kg.4__268__AT2G23380.1
Length=2898
Score = 4630 bits (2507), Expect = 0.0
Identities = 2782/2912 (96%), Gaps = 30/2912 (1%)
Strand=Plus/Plus
Query 18 ATGGCGTCAGAAGCTTCGCCTTCTTCTTCGGCCACCAGATCGGAGCCACCCAAAGACTCT 77
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCAGAAGCTTCGCCTTCTTCTTCCGCGACCAGATCGGAGCCACCCAAAGACTCT 60
Query 78 -C--CGGCGGAGGAGAGAGGTCCAGCTTCTAAGGAAGTATCAGAAGTAATAGAATCGCTA 134
| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ACTACGGAGGAGGAGAGAGGTCCAGCTGCTAAGGAAGTATCAGAAGTAATAGAATCGCTA 120
Query 135 AAGAAGAAGCTTGCAGCTGATAGGTGTATATCAATAAAGAAAAGGATTGATGAAAACAAG 194
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGAAGAAACTTGCAGCTGATAGGTGTATATCAATAAAGAAAAGGATTGATGAAAACAAT 180
Query 195 AAGAATTTGTTTGCTATTACTCAAAGTTTTATGAGGTCTTCTATGGAACGAGGAGGTAGC 254
|||||||||| || |||||||||||| ||||||||||| || |||||| ||||| ||||
Sbjct 181 AAGAATTTGTGTGGTATTACTCAAAGCTTTATGAGGTCGTCCATGGAAAGAGGAAGTAGT 240
Query 255 TGTAAAGATGGCAGTGATCTTTTAGTTAAGAGGCAAAGAGATTCGCCAGGTATGAAAAGC 314
||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 241 TGTAAAGATGGTAGTAATCTTTTAGTTAAGAGGCAAAGAGATTCGCCCGGGATGAAAAGC 300
Query 315 GGAATCGATG-AA--AGTAATAACAACAGATAT-GTAGAAGATGGACCTGCCAGTTCAGG 370
|||||||||| || ||||||||| |||||| | || |||||||||||||||| ||| ||
Sbjct 301 GGAATCGATGAAAGTAGTAATAACCACAGAT-TCGTTGAAGATGGACCTGCCAATTCTGG 359
Query 371 AATGGTTCAAGGATCTAGTGTCCCTGTCAAAATTTCCTTACGTCCTATCAAAATGCCTGA 430
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 360 AATGGTTCAAGGATCTAGTGTCCCTGTTAAGATTTCCTTACGTCCTATCAAAATGCCTGA 419
Query 431 TATCAAACGTTTGTCACCTTATACCACATGGGTTTTTCTGGACAGAAATCAAAGAATGAC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATCAAACGTTTGTCACCTTATACCACATGGGTTTTTCTGGACAGAAATCAAAGAATGAC 479
Query 491 TGAAGACCAGTCTGTAGTGGGTCGAAGGAGAATTTATTATGATCAAACTGGCGGGGAAGC 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGAAGACCAGTCTGTAGTGGGTCGAAGGAGAATTTATTATGATCAAACTGGCGGGGAAGC 539
Query 551 GCTTATCTGCAGTGATAGTGAAGAGGAGGCCATTGACGACGAAGAAGAAAAAAGAGATTT 610
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GCTCATCTGCAGTGATAGTGAAGAGGAGGCGATTGACGACGAAGAAGAAAAAAGAGATTT 599
Query 611 TTTGGAGCCTGAAGATTATATTATTCGCATGACCCTTGAGCAACTAGGTCTTTCAGACTC 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTGGAGCCTGAAGATTATATTATTCGCATGACCCTTGAGCAACTAGGTCTTTCAGACTC 659
Query 671 AGTCCTGGCGGAACTAGCAAGTTTCTTGTCTAGAAGTACTAGTGAAATCAAGGCAAGACA 730
||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTCGTGGAGGAACTAGCAAATTTCTTGTCTAGAAGTACTAGTGAAATCAAGGCAAGACA 719
Query 731 TGGAGTGCTTATGAAGGAAAAAGAAGTATCCGAGAGTGGCGATAATCAAGCAGAGAGCTC 790
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TGGAGTGCTTATGAAAGAAAAAGAAGTATCCGAGAGTGGGGATAATCAAGCAGAGAGCTC 779
Query 791 CCTTCTCAACAAAGATATGGAAGGAGCATTAGATTCTTTCGATAACCTGTTCTGCCGTAG 850
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CCTTCTCAACAAAGATATGGAAGGAGCATTAGATTCTTTCGATAACCTGTTTTGCCGTAG 839
Query 851 ATGCCTTGTATTTGATTGCCGGCTTCATGGGTGTTCACAGGATCTCATTTTTCCGGCTGA 910
|||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct 840 ATGCCTTGTATTTGATTGCCGGCTGCACGGGTGTTCACAGGATCTTATTTTTCCTGCTGA 899
Query 911 GAAACCAGCTCCATGGTGTCCTCCTGTAGATGAAAATTTAACCTGTGGTGCAAACTGCTA 970
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 GAAACCAGCTCCATGGTGTCCTCCTGTAGATGAAAATATAACCTGTGGTGCAAACTGCTA 959
Query 971 TAAAACGCTTCTCAAGTCTGGAAGATTTCCGGGATATGGCACCATTGAAGGTAAAACTGG 1030
|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 960 TAAAACGCTTCTCAAGTCTGAAAGAATTCCGGGATATGGCACCATTGAAGATAAAACTGG 1019
Query 1031 CACTTCATCAGATGGTGCAGGTACTAAAACCACACCCACGAAGTTCTCCAGCAAACTTAA 1090
||||||||||||||||||||||||| || | | |||| | |||| |||||||||
Sbjct 1020 CACTTCATCAGATGGTGCAGGTACT--AA--A-A-CCAC--A----TCCAACAAACTTAA 1067
Query 1091 TGGGAGAAAACCAAAGACCTTCCCAAGTGAAAGTGCATCGTCTAATGAAAAGTGCGCACT 1150
||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1068 TGGAAGAAAACCCAAGACCTTCCCAGGTGAAAGTGCATCGTCTAATGAAAAGTGCACACC 1127
Query 1151 AGAAACAAGTGACTCAGAGAATGGACTACAGCAGGATACCAATTCCGATAAAGTTTCATC 1210
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AGAAACAAGTGACTCAGAGAACGGACTACAGCAGGATACCAATTCCGATAAAGTTTCATC 1187
Query 1211 ATCGCCAAAGGTGAAAGGTAGTGGGAGACGAGTAGGTCGTAAGAGGAACAAAAACCGAGT 1270
|| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 1188 ATTGCCAAAGGTGAAAGGTAGTGGGAGACGTGGAGGTCGTAAGAGGAACAACAACCGAGT 1247
Query 1271 TGCTGAGCGAGTTCCTCGTAAGACTCAGAAGAGGCAGAAGAAGACAGAAGCCTCGGATAG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1248 CGCTGAGCGAGTTCCTCGTAAGACTCAGAAGAGGCAGAAGAAGACAGAAGCCTCAGATAG 1307
Query 1331 TGATTCCATCGCCAGTGGAAGTTGTTCACCCAGCGATGCAAAACATAAAGATAATGAAGA 1390
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1308 TGATTCCATCGCCAGTGGAAGTTGTTCACCCAGCAATGCAAAACATAAAGATAATGAAGA 1367
Query 1391 TGCTACTTCCTCTTCTCAGAAGCATGTAAAATCTGGGAACTCCGGGAAGTCAAGGAAGAA 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TGCTACTTCCTCTTCTCAGAAGCATGTAAAATCTGGGAACTCCGGGAAGTCAAGGAAGAA 1427
Query 1451 TGGCACTCCTGCCGAAGTCTCCAATAATTCTGTGAAGGATGACGTTCCTGTTTGCCAGTC 1510
|||||||||||| |||| |||||| ||| ||||||||||||||| |||||||||||||||
Sbjct 1428 TGGCACTCCTGCAGAAGACTCCAAGAATCCTGTGAAGGATGACGATCCTGTTTGCCAGTC 1487
Query 1511 AAATGAGGTTGCGTCAGAGCTTGATGCGCCGGGTAGTGATGAAAGTCTAAGGAAAGAAGA 1570
| || || ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1488 AGATAAGATTGCGTCTGAGCTTGATGCACCGTGTAGTGATGAAAGTCTAAGGAAAGAAGA 1547
Query 1571 GTTTATGGGTGAAACTGTATCTCGAGGAAGATTGGCTACAAATAAGTTGTGGAGACCACT 1630
|||| ||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 1548 GTTTGTGGGTGAAAATGTATGTCGAGCAAGATTGGCTACAAATAAATTGTGGAGACCACT 1607
Query 1631 TGAGAAAAGCCTTTTTGATAAAGGTGTTGAGATTTTTGGAATGAATAGCTGCTTGATTGC 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TGAGAAAAGCCTTTTTGATAAAGGTGTTGAGATTTTTGGAATGAATAGCTGCTTGATTGC 1667
Query 1691 TAGAAATCTTTTGAGTGGTTTCAAATCATGTTGGGAGGTCTTCCAATACATGACGTGCTC 1750
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1668 TAGAAACCTTTTGAGTGGTTTCAAGTCATGTTGGGAGGTCTTCCAATACATGACTTGCTC 1727
Query 1751 GGAAAATAAAGCTTCCTTCTTTGGAGGTGATGGATTGAATCCTGATGGCTCTTCCAAGTT 1810
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1728 GGAAAATAAAGCTTCCTTCTTTGGAGGTGATGCATTGAATCCTGATGGCTTTTCCAAGTT 1787
Query 1811 CGATATCAATGGAAATATGGTTAATAACCAAGTGAGGAGAAGGTCAAGATTTCTACGTAG 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 CGATATCAATGGAAATATGGTTAATAACCAAGTGAGGAGAAGGTCAAGATTTCTACGTAG 1847
Query 1871 GAGAGGCAAAGTGCGGCGCTTGAAGTATACCTGGAAGTCTGCTGCATATCATTCAATTAG 1930
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1848 GAGAGGCAAAGTGCGTCGCTTGAAGTATACTTGGAAGTCTGCTGCATATCATTCAATTAG 1907
Query 1931 GAAAAGAATTACTGAGAAGAAAGACCAGCCCTGCCGTCAGTTTAATCCATGTAACTGCAA 1990
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1908 GAAAAGAATTACTGAGAGGAAAGACCAGCCCTGCCGTCAGTTTAATCCATGCAACTGCAA 1967
Query 1991 AATTGCTTGTGGGAAGGAATGTCCTTGTTTGCTAAACGGGACTTGCTGCGAGAAGTACTG 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 AATTGCTTGTGGGAAGGAATGTCCTTGTTTGCTAAACGGGACTTGCTGCGAGAAGTACTG 2027
Query 2051 CGGTTGCCCAAAGAGCTGCAAGAATAGGTTTAGAGGTTGTCATTGTGCCAAAAGTCAGTG 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 CGGTTGCCCAAAGAGCTGCAAGAATAGGTTTAGAGGTTGTCATTGTGCCAAAAGTCAGTG 2087
Query 2111 TCGAAGCCGCCAGTGTCCATGCTTTGCTGCAGATCGGGAATGTGACCCAGATGTTTGTAG 2170
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2088 TCGAAGCCGTCAATGTCCATGCTTTGCGGCAGATCGGGAATGTGACCCAGATGTTTGTAG 2147
Query 2171 AAACTGCTGGGTCATTGGTGGGGATGGTTCGCTTGGGGTCCCAAGCCAAAGAGGCGATAA 2230
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2148 GAACTGCTGGGTCATTGGTGGGGATGGTTCGCTTGGGGTTCCAAGCCAAAGAGGCGATAA 2207
Query 2231 TTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGGTTTTACTTGGAAT 2290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 TTATGAGTGCAGGAATATGAAATTGCTCCTGAAACAACAACAAAGGGTTTTACTTGGAAT 2267
Query 2291 ATCTGATGTTTCTGGTTGGGGAGCTTTCTTAAAGAACAGTGTAAGTAAGCATGAATACCT 2350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 ATCTGATGTTTCTGGTTGGGGAGCTTTCTTAAAGAACAGTGTAAGTAAGCATGAATACCT 2327
Query 2351 TGGGGAATACACAGGAGAGCTGATCTCACATAAAGAGGCAGATAAACGCGGGAAGATATA 2410
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2328 TGGGGAATACACAGGAGAGCTGATCTCACATAAAGAAGCAGATAAACGCGGGAAGATATA 2387
Query 2411 CGATCGCGAGAACTGCTCTTTTCTCTTCAATCTAAACGATCAGTTTGTGCTAGATGCTTA 2470
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 TGATCGCGAGAACTCCTCTTTTCTCTTCAATCTAAACGATCAGTTTGTGCTAGATGCTTA 2447
Query 2471 CAGGAAAGGAGATAAACTGAAATTCGCCAACCATTCTCCTGAACCTAACTGTTACGCAAA 2530
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 CAGGAAAGGAGACAAACTTAAATTCGCCAACCATTCTCCTGAACCTAACTGTTACGCAAA 2507
Query 2531 GGTCATCATGGTTGCTGGAGATCACAGGGTGGGGATCTTCGCAAAAGAGAGGATACTGGC 2590
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508 GGTCATTATGGTTGCTGGAGATCACAGGGTGGGGATCTTCGCAAAAGAGAGGATACTGGC 2567
Query 2591 TGGAGAAGAACTATTTTACGATTACCGGTATGAGCCAGATCGAGCTCCAGCTTGGGCCAA 2650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2568 TGGAGAAGAACTATTTTACGATTACCGGTATGAGCCAGATCGAGCTCCAGCTTGGGCCAA 2627
Query 2651 AAAACCTGAAGCTCCTGGTTCTAAGAAAGACGAAAATGTTACACCTTCTGTTGGTAGACC 2710
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2628 AAAACCTGAAGCTCCGGGTTCGAAGAAAGACGAAAATGTTACACCTTCTGTTGGCAGACC 2687
Query 2711 CAAGAAGCTTGCTTAGCAACAAAAGAAACAACCAttttttt-GTCAATTCTTTGGTTACA 2769
|||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 2688 CAAGAAGCTTGCCTAGCAACAAAAGAAACAACCATTTTTTTTGTCGATTCTTTGATTACA 2747
Query 2770 GGTGGAAGAACGCT------TTAATCCTCATTACTCTCCACACGGAAGAACACATTGAAA 2823
|||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2748 GGTGGAAGAACGCTAACGCATTAATCCTCATTATTCTCCACACGGAAGA-CACATTGAAA 2806
Query 2824 CAAATTCATACATTTTGCTGAGTCTAAAGAAAAATTGTATTCGTTGGATTAAAA-TTT-C 2881
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 2807 CAAATTTATACATTTTGCTGAGTCTAAAGAAAAGTTGTATTCGTTGGATTAAAAATTTTC 2866
Query 2882 CTTTTTTCGTTTTACATTTCTGGATTATCATT 2913
||||||||||||||||||||||||||||||||
Sbjct 2867 CTTTTTTCGTTTTACATTTCTGGATTATCATT 2898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112061500790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5