BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23390.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481209 jgi|Araly1|481209|fgenesh2_kg.4__269__AT2G23390.1 2276 0.0
> Ahg481209 jgi|Araly1|481209|fgenesh2_kg.4__269__AT2G23390.1
Length=1573
Score = 2276 bits (1232), Expect = 0.0
Identities = 1495/1615 (93%), Gaps = 45/1615 (3%)
Strand=Plus/Plus
Query 29 aaaTCATCAGCGACCACTGTGACTCCACTTGAGCGCCGGAGCCGCCGCCGTCGCCGTCGC 88
|||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||| | |
Sbjct 1 AAATCATCAGCGACCACTGTGATTCCACTTGATCGCCGGAGTCGCCGTCGTCGCCG-C-C 58
Query 89 GTCGGAACTCCATTTTCACGTTCCTCTTCAAACACACCGACGCGTAACCAGTTTCGTCCA 148
| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 G-C-G-------------CGTTCCTCTTCAAACACACCGACGCGTAACCAGTTTCGTCCA 103
Query 149 TGGCCGTTGTACTTTCCTACTGCAAACCTTCGCCTCCTCTTCGTCGATTCCATCGTCGCT 208
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 104 TGGCCGTTGTACTTTCCTACTGCAAACCTTCGCCTCCTCTCCGTCGATTCCATCGTCGCT 163
Query 209 GCGGAAATTTGTGGAAGAAAGAAAATGTTAGGAGTTCAAGACGATCATCTTCGGTTACTG 268
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 164 GCGGAAATTTGTGGAAGAAAGGAAATGTTAGGAGTTCAAGACGATCATCTACGGTTACTG 223
Query 269 CTATGTTTTGGAAGTCCAATAAGCCTGCGGAAGTAAAGGAATTCGATATATCACTTAGAG 328
|||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |
Sbjct 224 CTATGTTTTGGAAGACCAATAAACCTGCGGAAGTACGGGAATTCGATATATCACTTAGGG 283
Query 329 ATTACACTCTAACTGAATCAAACATTGAGGAAGCTTTGGAAAACAAGCCGAAGCAAAAGG 388
||||||||||||||| || | | | | |||| | |||||| || ||| |
Sbjct 284 ATTACACTCTAACTGGAT----C----A-G-A-CTTT-G------AGCCGAGGCGAAATG 325
Query 389 TGATTTCACTATCAGTTGTTTCTTCAATATTTGAGATACCACAAGCTGAATGGGATGCAT 448
||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 326 TGATTTCACTATCAGCTGTTTCTTCAATATTAGAGATACCACCAGCTGAATGGGATGCAT 385
Query 449 GTGCGTTGGATTCTTCTCAACCTGAAAGCTATAATCCATTTCTAAGTTATGGATTTCTTT 508
|||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 386 GTGCTTTGGATTCTTCTCAACCTGAAAGTTATAATCCATTTCTAAGTCATGGTTTTCTTT 445
Query 509 CCAGTTTAGAAGATACTGGTTGTGCCGTTCGGGAAACAGGTTGGATGCCATTACACATTG 568
||||||||||||| || || |||||||| ||||||||||||||||||||||| || ||||
Sbjct 446 CCAGTTTAGAAGAGACGGGATGTGCCGTCCGGGAAACAGGTTGGATGCCATTGCATATTG 505
Query 569 TTGCAAAGGATGAATGTGAGAGTATTTTGGGTGTTGTTCCACTTTATCTCAAAAGCCATT 628
||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||
Sbjct 506 TTGCAAAGGATGAATCTGAGAGTATTTTGGGCGTCGTCCCACTTTATCTCAAAAGCCATT 565
Query 629 CTTATGGCGAATTTGTTTTTGATCATTCTTGGGCTGATGCATACCGAAGTTTTGGCGGAA 688
| ||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||
Sbjct 566 CCTATGGCGAATTTGTTTTTGATCACTCTTGGGCTGATGCATACCGCAGTTTCGGTGGAA 625
Query 689 GATATTATCCTAAACTTCAGTGTTGTGTTCCTTTCACCCCAGTTACTGGTCCTAGGATTC 748
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 626 GATATTATCCTAAACTTCAGTGTTGTGTTCCTTTCACCCCAGTTACCGGCCCTAGGA-TC 684
Query 749 TT-ATCCGTGATAATCCTTGCAAAGAGCAAGTTTTTGATGCTATTGTTTCTGCCATGACG 807
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TTAATCCGTAATAATCCTTGCAAAGAGCAAGTTTTTGATGCTATTGTTTCTGCCATGACA 744
Query 808 GAATTGGCATCAAAGTTACAAGTTTCATCTTTGCACATTACATTTCCGTCTGGAGCTGAG 867
||| ||||| | ||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 745 GAACTGGCAGCTAAGTTACGAGTTTCATCTTTGCACATTACATTTCCTTCTGGAGTTGAG 804
Query 868 TGGGACAAATTGAAAGAGAAAGGCTTCTCACAAAGGATTGGAATGCAGTACCACTGGAAA 927
||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 805 TGGAACAAATTGAAGGAGAAAGGCTTCTCACAGAGGATTGGAATGCAGTATCACTGGCAA 864
Query 928 AATCGTGATTATAAAAATTTTGACGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAA 987
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 865 AATCGTGACTATAAAAATTTTGATGAGTTCTTGATGGACATGAAGCAAAGCAAAAGGAAA 924
Query 988 AATATCCGACAGGAACGCAAAAAGATTGGTACCCAGAATTTGAAAATGAGACGGCTACAA 1047
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 AATATCCGGCAGGAACGTAAAAAGATTGGTACCCAGAATTTGAAAATGAGACGGCTACAA 984
Query 1048 GGAGATGATATAAAGGCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACT 1107
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 985 GGAGATGAAATAAAGGCTAGGCATTGGGATTCCTTCTATGACTTCTACAGGAACACAACT 1044
Query 1108 GATAACAAATGGGGCACACCTTATCTCACAAGGGATTTCTTTCACGACATGGCATCGAAG 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GATAACAAATGGGGCACACCTTATCTCACAAGGGATTTCTTTCACGACATGGCATCGAAG 1104
Query 1168 TTGGGAGACAAGGTATTGCTTGTT-TTAGCTGAAGAAAACGAGGAACCTGTTGCAGGAGC 1226
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1105 TTAGGAGACAAGGTATTGCTTGTTCTT-GCTGAAGAAAACGAGGAACCTGTTGCAGGAGC 1163
Query 1227 ATTGAATCTCATTGGAGGAGATACTCTATTTGGGAGACTATGGGGATGTCGTCCCGACTC 1286
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1164 ATTGAATCTTATTGGAGGAGATACTCTATTTGGGAGACTATGGGGATGTCGTCCTGATTC 1223
Query 1287 CTATTATCCTAGTCTCCATTTTGAAGCATGCTATTACCAGGCAATTGAAGCAGCGATAGA 1346
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1224 CTATTATCCTAGTCTCCATTTTGAAGCGTGCTATTACCAGGCAATTGAAGCAGCAATAGA 1283
Query 1347 GCTTAATCTGAAAACGGTAGAAGCTGGAGCGCAGGGTGAGCATAAGATTCAGCGAGGCTA 1406
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1284 GCTTAATCTGAAAACGGTGGAAGCTGGAGCTCAGGGTGAGCATAAGATTCAGCGAGGCTA 1343
Query 1407 CCTTCCCGTTAAAACATATAGTTGCCATTACATATTCGATGAAGGTTTCAGGCAAGCCAT 1466
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 CCTTCCTGTTAAAACATATAGTTGCCATTACATATTCGATGAAGGTTTCAGGCAAGCCAT 1403
Query 1467 AGACGAGTTTTTAGTGCGCGAATCAAATCAGATGGATTATGTCATCAGACTGATGCATGA 1526
||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||
Sbjct 1404 AGACGAGTTTTTAGTGCGCGAATCAAATCAGGTGGATTTTGTCATCAAACTGTTGCATGA 1463
Query 1527 AGATGGACCCTTCAAAGAGAAAATAGAATAGATGCATTT-ATATCTTGGTTATCGCAAAC 1585
||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 1464 AGATGGACCCTTCAAAGAGAACATAGAATAGATGCATTTTATATCTTGGTTACCGCAAAC 1523
Query 1586 ATTCTTGTATATCTTAATTCTTAGGTTTATGCGTCAATGTACATTTTAATTTGGC 1640
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1524 ATTCTTGTATA----A-TTCTTAGGTTTATGCGTCAATGTACATTTTAATTTGGC 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5