BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23410.1 Length=1060 Score E Sequences producing significant alignments: (Bits) Value Ahg481211 jgi|Araly1|481211|fgenesh2_kg.4__271__AT2G23410.1 1125 0.0 Ahg481210 jgi|Araly1|481210|fgenesh2_kg.4__270__AT2G23400.1 985 0.0 Ahg496003 jgi|Araly1|496003|fgenesh2_kg.8__1819__AT5G58782.1 712 0.0 > Ahg481211 jgi|Araly1|481211|fgenesh2_kg.4__271__AT2G23410.1 Length=928 Score = 1125 bits (609), Expect = 0.0 Identities = 763/834 (91%), Gaps = 24/834 (3%) Strand=Plus/Plus Query 144 TCATCGGACTCATCAAAATCAAAGCTGCTC--G---A----GACAACGAGAAACGTGATG 194 |||||||||||||||||||||||||||||| | | |||||| |||||||||||| Sbjct 104 TCATCGGACTCATCAAAATCAAAGCTGCTCGAGACCATGGTGACAACAAGAAACGTGATG 163 Query 195 AGGGAACTTATGTTGTCCGCGAGGATGG-GTTACAAAGAGAACTAATGCCGAGACACGTG 253 ||||||||||||||||||| ||||| || | |||||||||| | |||||||| ||||| Sbjct 164 AGGGAACTTATGTTGTCCGAGAGGA-GGAGCTACAAAGAGAGTTGATGCCGAGGCACGTA 222 Query 254 GCATTCATACTGGATGGGAACCGGAGATGGGCCAAACGGGCCGGATTGACGACGTC-ACA 312 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||| Sbjct 223 GCATTCATATTGGATGGAAACCGGAGATGGGCCAAACGGGCCGGATTGACGACG-CAACA 281 Query 313 AGGCCACGAGGCGGGAGCTAAACGGCTTATAGATATCGCCGAGCTCTGCTTCGAGTTGGG 372 |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 282 AGGCCACGAGGCAGGAGCTAAACGGCTTGTAGAAATCGCCGAGCTCTGCTTCGAGTTGGG 341 Query 373 GGTTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAAGATTG- 431 | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 342 GATTCATACAGTCTCAGCTTTTGTTTTCTCCACAGAGAATTGGGGAAGAGACAAGATTGA 401 Query 432 AGATTGATAACTTGATGTCTTTGATCCAACACTACCGCAATAAGTCCAACATCAAATTCT 491 || |||||||||| |||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 402 AG-TTGATAACTTAATGTCTTTGATCCAACACTACCGC---AAGTCCGACATCCAATTCT 457 Query 492 TCCACAGATCGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTGAATC-T 550 |||| ||||||||| ||||||||||||||||||||||| |||| || ||| ||||| | | Sbjct 458 TCCATAGATCGGAAATTCGCGTTTCTGTTATCGGGAATCAAACAAATATCTCTGAA-CAT 516 Query 551 CTCCT-CAAAGAAATCCATGAGATAGAGGAAGCTACCAAAGGCTACAAGAATAAACATCT 609 ||||| |||| || |||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 517 CTCCTCCAAA-AACTCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGCATCT 575 Query 610 CATCATGGCAGTAGATTACAGCGGGAAATTTGATATCATGCATGCTTGCAAGAGTCTTGT 669 |||| ||||| ||||||||||||||| ||| ||||||||||| ||||||||||||||||| Sbjct 576 CATCGTGGCAATAGATTACAGCGGGAGATTCGATATCATGCACGCTTGCAAGAGTCTTGT 635 Query 670 GAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCGAGAG 729 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 636 GAAGAAATCAGAGAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATTGAGAG 695 Query 730 AGAGCTTTTGACAAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGG 789 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 GGAGCTATTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGG 755 Query 790 AGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATTCCGAGCT-TTTCTTCT 848 ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| Sbjct 756 AGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCTCTTT-TTCT 814 Query 849 CGCCGGTATTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTTGCTTCGTATC 908 ||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||| Sbjct 815 CGCCGGTCTTTTGGCCTGATTTTGATAAGGATAAGCTTCTAGAGGCTCTGGATTCGTATC 874 Query 909 AGCGTAGGGAAAGACGATTTGGTTGTCGGGTTTGATCCACCTTTCATCCTCTCT 962 |||| ||||||||||||||||| ||||| ||||||||||| ||||||||| ||| Sbjct 875 AGCGCAGGGAAAGACGATTTGGCTGTCGTGTTTGATCCACATTTCATCCTTTCT 928 > Ahg481210 jgi|Araly1|481210|fgenesh2_kg.4__270__AT2G23400.1 Length=807 Score = 985 bits (533), Expect = 0.0 Identities = 685/758 (90%), Gaps = 11/758 (1%) Strand=Plus/Plus Query 190 TGATGAGGGAACTTATGTTGTCCGCGAGGATGG-GTTACAAAGAGAACTAATGCCGAGAC 248 |||||||||||||| ||||||||| ||||| || | |||||||||| || |||||||| | Sbjct 57 TGATGAGGGAACTTGTGTTGTCCGAGAGGA-GGAGCTACAAAGAGAGCTGATGCCGAGGC 115 Query 249 ACGTGGCATTCATACTGGATGGGAACCGGAGATGGGCCAAACGGGCCGGATTGAC-GACG 307 |||||||||||||||||||||||||||| |||||||||||||| | ||||||| | |||| Sbjct 116 ACGTGGCATTCATACTGGATGGGAACCGTAGATGGGCCAAACGAGACGGATTG-CTGACG 174 Query 308 TCACAAGGCCACGAGGCGGGAGCTAAACGGCTTATAGATATCGCCGAGCTCTGCTTCGAG 367 ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| Sbjct 175 TCACAAGGCCACGAGGCCGGAGCTAAACGGTTTATAGAGATCGCCGAGCTCTGCTTCGAA 234 Query 368 TTGGGGGTTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAA- 426 | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 235 CTCGGGATTCATACAGTCTCAGCTTTTGCTTTCTCCACAGGGAATTGGGGAAGAGACAAG 294 Query 427 GATTGAGATTGA-TAACTTGATGTCTTTGATCCAACACTACCGCAATAAGTCCAACATCA 485 || |||| | | | ||| ||||||||| |||||||| | | | |||||||||| | Sbjct 295 GA-TGAGGTCAAGTGGCTT-ATGTCTTTGTTCCAACACCAACTC---AAGTCCAACAGCC 349 Query 486 AATTCTTCCACAGATCGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTG 545 ||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||||| || Sbjct 350 AATACTTTCACAGAAAGGAAATTCGCGTTTCTGTTATCGGGAATCAAACGAAGATCGATG 409 Query 546 AATCTCTCCTCAAAGAAATCCATGAGATAGAGGAAGCTACCAAAGGCTACAAGAATAAAC 605 ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 410 AATCTATCCTCCAAGAAATCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGC 469 Query 606 ATCTCATCATGGCAGTAGATTACAGCGGGAAATTTGATATCATGCATGCTTGCAAGAGTC 665 |||||||| ||||| ||||||| ||||||| ||| ||||||||||| ||||||||||||| Sbjct 470 ATCTCATCGTGGCAATAGATTATAGCGGGAGATTCGATATCATGCACGCTTGCAAGAGTC 529 Query 666 TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCG 725 |||||||||||||||| | |||||||||||||||| |||| || |||||||||||||||| Sbjct 530 TTGTGAAGAAATCAGAGAGAGGGTTGATCCGAGAGCAAGACGTTGACGAGGCATTGATCG 589 Query 726 AGAGAGAGCTTTTGACAAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAA 785 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 AGAGAGAGCTTCTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAA 649 Query 786 GTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATTCCGAGCTTTTCT 845 |||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||| Sbjct 650 GTGGAGAACAGAGGATTAGTGACTTCTTCTTGTGGCAACTTGCTTATACCGAGGTCTTCT 709 Query 846 TCTCGCCGGTATTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTTGCTTCGT 905 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 710 TCTCGCCGGTCCTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTCGCTTCGT 769 Query 906 ATCAGCGTAGGGAAAGACGATTTGGTTGTCGGGTTTGA 943 ||||||| |||||||||||||||||||||||| ||||| Sbjct 770 ATCAGCGCAGGGAAAGACGATTTGGTTGTCGGATTTGA 807 > Ahg496003 jgi|Araly1|496003|fgenesh2_kg.8__1819__AT5G58782.1 Length=915 Score = 712 bits (385), Expect = 0.0 Identities = 627/742 (85%), Gaps = 23/742 (3%) Strand=Plus/Plus Query 229 AAGAGAACTAATGCCGAGACACGTGGCATTCATACTGGATGGGAACCGGAGATGGGCCAA 288 |||||| || |||||||||||||||||| | ||| |||| || || ||||||||||| || Sbjct 176 AAGAGAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAATCGGAGATGGGCGAA 235 Query 289 ACGGGCCGGATTGACGACGTCACAAGGCCACGAGGCGGGAGCTAAACGGCTT-ATAGA-T 346 || |||||||||| ||||||||||||| ||||||| |||||||||||| || ||||| | Sbjct 236 ACAGGCCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGG-TTAATAGAGT 294 Query 347 ATCGCCGAGCTCTGCTTCGAGTTGGGGGTTCATACAGTCTCAGCTTTTGCTTTCTCCACA 406 ||||||||||||||||| | | ||| | |||| ||||||||||||||||||||||| Sbjct 295 -TCGCCGAGCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTTCTCCACT 353 Query 407 GAGAATTGGGGAAGAGACAAGATTGAGATTGATAA--CTTGATGTCTTTGATCCAACACT 464 ||||||||||||||| |||||||||| | | | || |||||||| |||| |||||| | Sbjct 354 GAGAATTGGGGAAGACACAAGATTGA-AGTCA-AATGCTTGATGTATTTGTTCCAACGTT 411 Query 465 ACCGCAATAAGTCCAACATCAAATTCTTCCACAG-ATCGGAAGTTCGCGTTTCTGTTATC 523 ||| | ||||| || ||| |||||||||| || | |||| | || |||||||||||| Sbjct 412 ACCTC---AAGTCAAAGATCCAATTCTTCCAGAGCA-AGGAAATCCGAGTTTCTGTTATC 467 Query 524 GGGAATAAAACGAAGATCCCTGAATCTCTCCTC-AAAGAAATC-CATGAGATAGAGGAAG 581 |||||| ||||||| || |||||||||||| || |||| || ||||||||||| | Sbjct 468 GGGAATCTTGCGAAGATTCCGGAATCTCTCCTCGGAA-TAATCACA-GAGATAGAGGATG 525 Query 582 CTACCAAAG-GCTACAAGAATAAACATCTCATCATGG-CAGTAGATTACAGCGGGAAATT 639 ||| ||||| | |||||||| || ||||||||| ||| || ||||||||||||||| ||| Sbjct 526 CTA-CAAAGAGTTACAAGAAGAAGCATCTCATCTTGGCCA-TAGATTACAGCGGGAGATT 583 Query 640 TGATATCATGCATGCTTGCAAGAGTC-TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAG 698 || ||| ||| |||||||||||| | ||||||||||||||||| |||| |||||||||| Sbjct 584 CGACATCTTGCGTGCTTGCAAGAG-CATTGTGAAGAAATCAGAACAAGGTTTGATCCGAG 642 Query 699 AGGAAGATGTAGACGAGGCATTGATCGAGAGAGAGCTTTTGACAAATTGTAGTGACTTCC 758 ||||||| || |||||| | ||| | |||||||||||| ||| || |||| || |||| Sbjct 643 AGGAAGAAGTGGACGAGACGTTGTTGGAGAGAGAGCTTCAGACCAAGTGTACAGAGTTCC 702 Query 759 CAAGTCCTGATTTAATGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGT 818 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 CAAGTCCTGATCTCTTGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGT 762 Query 819 GGCAACTTGCTTATTCCGAGCTTTTCTTCTCGCCGGTATTTTGGCCTGATTTCGATAAGG 878 ||||||| |||||| ||||||| |||||||| ||||| ||||||||||||| || |||| Sbjct 763 GGCAACTCGCTTATACCGAGCTCTTCTTCTCACCGGTCCTTTGGCCTGATTTTGACAAGG 822 Query 879 ATAAGCTTCTAGAGGCTCTTGCTTCGTATCAGCGTAGGGAAAGACGATTTGGTTGTCGGG 938 |||||||| |||| || || | |||||||||||| ||||||||||||||||| ||||||| Sbjct 823 ATAAGCTTTTAGACGCCCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGCTGTCGGG 882 Query 939 TTTGATCCACCTTTCATCCTCT 960 |||||||||| ||| ||||||| Sbjct 883 TTTGATCCACATTTGATCCTCT 904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39457219095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5