BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23410.1
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481211 jgi|Araly1|481211|fgenesh2_kg.4__271__AT2G23410.1 1125 0.0
Ahg481210 jgi|Araly1|481210|fgenesh2_kg.4__270__AT2G23400.1 985 0.0
Ahg496003 jgi|Araly1|496003|fgenesh2_kg.8__1819__AT5G58782.1 712 0.0
> Ahg481211 jgi|Araly1|481211|fgenesh2_kg.4__271__AT2G23410.1
Length=928
Score = 1125 bits (609), Expect = 0.0
Identities = 763/834 (91%), Gaps = 24/834 (3%)
Strand=Plus/Plus
Query 144 TCATCGGACTCATCAAAATCAAAGCTGCTC--G---A----GACAACGAGAAACGTGATG 194
|||||||||||||||||||||||||||||| | | |||||| ||||||||||||
Sbjct 104 TCATCGGACTCATCAAAATCAAAGCTGCTCGAGACCATGGTGACAACAAGAAACGTGATG 163
Query 195 AGGGAACTTATGTTGTCCGCGAGGATGG-GTTACAAAGAGAACTAATGCCGAGACACGTG 253
||||||||||||||||||| ||||| || | |||||||||| | |||||||| |||||
Sbjct 164 AGGGAACTTATGTTGTCCGAGAGGA-GGAGCTACAAAGAGAGTTGATGCCGAGGCACGTA 222
Query 254 GCATTCATACTGGATGGGAACCGGAGATGGGCCAAACGGGCCGGATTGACGACGTC-ACA 312
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 223 GCATTCATATTGGATGGAAACCGGAGATGGGCCAAACGGGCCGGATTGACGACG-CAACA 281
Query 313 AGGCCACGAGGCGGGAGCTAAACGGCTTATAGATATCGCCGAGCTCTGCTTCGAGTTGGG 372
|||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 282 AGGCCACGAGGCAGGAGCTAAACGGCTTGTAGAAATCGCCGAGCTCTGCTTCGAGTTGGG 341
Query 373 GGTTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAAGATTG- 431
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 342 GATTCATACAGTCTCAGCTTTTGTTTTCTCCACAGAGAATTGGGGAAGAGACAAGATTGA 401
Query 432 AGATTGATAACTTGATGTCTTTGATCCAACACTACCGCAATAAGTCCAACATCAAATTCT 491
|| |||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 402 AG-TTGATAACTTAATGTCTTTGATCCAACACTACCGC---AAGTCCGACATCCAATTCT 457
Query 492 TCCACAGATCGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTGAATC-T 550
|||| ||||||||| ||||||||||||||||||||||| |||| || ||| ||||| | |
Sbjct 458 TCCATAGATCGGAAATTCGCGTTTCTGTTATCGGGAATCAAACAAATATCTCTGAA-CAT 516
Query 551 CTCCT-CAAAGAAATCCATGAGATAGAGGAAGCTACCAAAGGCTACAAGAATAAACATCT 609
||||| |||| || |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 517 CTCCTCCAAA-AACTCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGCATCT 575
Query 610 CATCATGGCAGTAGATTACAGCGGGAAATTTGATATCATGCATGCTTGCAAGAGTCTTGT 669
|||| ||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 576 CATCGTGGCAATAGATTACAGCGGGAGATTCGATATCATGCACGCTTGCAAGAGTCTTGT 635
Query 670 GAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCGAGAG 729
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 636 GAAGAAATCAGAGAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATTGAGAG 695
Query 730 AGAGCTTTTGACAAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGG 789
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GGAGCTATTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAAGTGG 755
Query 790 AGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATTCCGAGCT-TTTCTTCT 848
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 756 AGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATACCGAGCTCTTT-TTCT 814
Query 849 CGCCGGTATTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTTGCTTCGTATC 908
||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 815 CGCCGGTCTTTTGGCCTGATTTTGATAAGGATAAGCTTCTAGAGGCTCTGGATTCGTATC 874
Query 909 AGCGTAGGGAAAGACGATTTGGTTGTCGGGTTTGATCCACCTTTCATCCTCTCT 962
|||| ||||||||||||||||| ||||| ||||||||||| ||||||||| |||
Sbjct 875 AGCGCAGGGAAAGACGATTTGGCTGTCGTGTTTGATCCACATTTCATCCTTTCT 928
> Ahg481210 jgi|Araly1|481210|fgenesh2_kg.4__270__AT2G23400.1
Length=807
Score = 985 bits (533), Expect = 0.0
Identities = 685/758 (90%), Gaps = 11/758 (1%)
Strand=Plus/Plus
Query 190 TGATGAGGGAACTTATGTTGTCCGCGAGGATGG-GTTACAAAGAGAACTAATGCCGAGAC 248
|||||||||||||| ||||||||| ||||| || | |||||||||| || |||||||| |
Sbjct 57 TGATGAGGGAACTTGTGTTGTCCGAGAGGA-GGAGCTACAAAGAGAGCTGATGCCGAGGC 115
Query 249 ACGTGGCATTCATACTGGATGGGAACCGGAGATGGGCCAAACGGGCCGGATTGAC-GACG 307
|||||||||||||||||||||||||||| |||||||||||||| | ||||||| | ||||
Sbjct 116 ACGTGGCATTCATACTGGATGGGAACCGTAGATGGGCCAAACGAGACGGATTG-CTGACG 174
Query 308 TCACAAGGCCACGAGGCGGGAGCTAAACGGCTTATAGATATCGCCGAGCTCTGCTTCGAG 367
||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 175 TCACAAGGCCACGAGGCCGGAGCTAAACGGTTTATAGAGATCGCCGAGCTCTGCTTCGAA 234
Query 368 TTGGGGGTTCATACAGTCTCAGCTTTTGCTTTCTCCACAGAGAATTGGGGAAGAGACAA- 426
| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 235 CTCGGGATTCATACAGTCTCAGCTTTTGCTTTCTCCACAGGGAATTGGGGAAGAGACAAG 294
Query 427 GATTGAGATTGA-TAACTTGATGTCTTTGATCCAACACTACCGCAATAAGTCCAACATCA 485
|| |||| | | | ||| ||||||||| |||||||| | | | |||||||||| |
Sbjct 295 GA-TGAGGTCAAGTGGCTT-ATGTCTTTGTTCCAACACCAACTC---AAGTCCAACAGCC 349
Query 486 AATTCTTCCACAGATCGGAAGTTCGCGTTTCTGTTATCGGGAATAAAACGAAGATCCCTG 545
||| ||| |||||| |||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 350 AATACTTTCACAGAAAGGAAATTCGCGTTTCTGTTATCGGGAATCAAACGAAGATCGATG 409
Query 546 AATCTCTCCTCAAAGAAATCCATGAGATAGAGGAAGCTACCAAAGGCTACAAGAATAAAC 605
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 410 AATCTATCCTCCAAGAAATCCATGAGATAGAGGAAGCTACGAAAGGCTACAAGAATAAGC 469
Query 606 ATCTCATCATGGCAGTAGATTACAGCGGGAAATTTGATATCATGCATGCTTGCAAGAGTC 665
|||||||| ||||| ||||||| ||||||| ||| ||||||||||| |||||||||||||
Sbjct 470 ATCTCATCGTGGCAATAGATTATAGCGGGAGATTCGATATCATGCACGCTTGCAAGAGTC 529
Query 666 TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAGAGGAAGATGTAGACGAGGCATTGATCG 725
|||||||||||||||| | |||||||||||||||| |||| || ||||||||||||||||
Sbjct 530 TTGTGAAGAAATCAGAGAGAGGGTTGATCCGAGAGCAAGACGTTGACGAGGCATTGATCG 589
Query 726 AGAGAGAGCTTTTGACAAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAA 785
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AGAGAGAGCTTCTGACGAATTGTAGTGACTTCCCAAGTCCTGATTTAATGATTAGGACAA 649
Query 786 GTGGAGAACAGAGGATTAGTAACTTCTTCTTGTGGCAACTTGCTTATTCCGAGCTTTTCT 845
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| | ||||
Sbjct 650 GTGGAGAACAGAGGATTAGTGACTTCTTCTTGTGGCAACTTGCTTATACCGAGGTCTTCT 709
Query 846 TCTCGCCGGTATTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTTGCTTCGT 905
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 710 TCTCGCCGGTCCTTTGGCCTGATTTCGATAAGGATAAGCTTCTAGAGGCTCTCGCTTCGT 769
Query 906 ATCAGCGTAGGGAAAGACGATTTGGTTGTCGGGTTTGA 943
||||||| |||||||||||||||||||||||| |||||
Sbjct 770 ATCAGCGCAGGGAAAGACGATTTGGTTGTCGGATTTGA 807
> Ahg496003 jgi|Araly1|496003|fgenesh2_kg.8__1819__AT5G58782.1
Length=915
Score = 712 bits (385), Expect = 0.0
Identities = 627/742 (85%), Gaps = 23/742 (3%)
Strand=Plus/Plus
Query 229 AAGAGAACTAATGCCGAGACACGTGGCATTCATACTGGATGGGAACCGGAGATGGGCCAA 288
|||||| || |||||||||||||||||| | ||| |||| || || ||||||||||| ||
Sbjct 176 AAGAGAGCTGATGCCGAGACACGTGGCAGTGATAATGGACGGAAATCGGAGATGGGCGAA 235
Query 289 ACGGGCCGGATTGACGACGTCACAAGGCCACGAGGCGGGAGCTAAACGGCTT-ATAGA-T 346
|| |||||||||| ||||||||||||| ||||||| |||||||||||| || ||||| |
Sbjct 236 ACAGGCCGGATTGTTGACGTCACAAGGCTACGAGGCTGGAGCTAAACGG-TTAATAGAGT 294
Query 347 ATCGCCGAGCTCTGCTTCGAGTTGGGGGTTCATACAGTCTCAGCTTTTGCTTTCTCCACA 406
||||||||||||||||| | | ||| | |||| |||||||||||||||||||||||
Sbjct 295 -TCGCCGAGCTCTGCTTCAAACTAGGGATAAATACTGTCTCAGCTTTTGCTTTCTCCACT 353
Query 407 GAGAATTGGGGAAGAGACAAGATTGAGATTGATAA--CTTGATGTCTTTGATCCAACACT 464
||||||||||||||| |||||||||| | | | || |||||||| |||| |||||| |
Sbjct 354 GAGAATTGGGGAAGACACAAGATTGA-AGTCA-AATGCTTGATGTATTTGTTCCAACGTT 411
Query 465 ACCGCAATAAGTCCAACATCAAATTCTTCCACAG-ATCGGAAGTTCGCGTTTCTGTTATC 523
||| | ||||| || ||| |||||||||| || | |||| | || ||||||||||||
Sbjct 412 ACCTC---AAGTCAAAGATCCAATTCTTCCAGAGCA-AGGAAATCCGAGTTTCTGTTATC 467
Query 524 GGGAATAAAACGAAGATCCCTGAATCTCTCCTC-AAAGAAATC-CATGAGATAGAGGAAG 581
|||||| ||||||| || |||||||||||| || |||| || ||||||||||| |
Sbjct 468 GGGAATCTTGCGAAGATTCCGGAATCTCTCCTCGGAA-TAATCACA-GAGATAGAGGATG 525
Query 582 CTACCAAAG-GCTACAAGAATAAACATCTCATCATGG-CAGTAGATTACAGCGGGAAATT 639
||| ||||| | |||||||| || ||||||||| ||| || ||||||||||||||| |||
Sbjct 526 CTA-CAAAGAGTTACAAGAAGAAGCATCTCATCTTGGCCA-TAGATTACAGCGGGAGATT 583
Query 640 TGATATCATGCATGCTTGCAAGAGTC-TTGTGAAGAAATCAGAAAAAGGGTTGATCCGAG 698
|| ||| ||| |||||||||||| | ||||||||||||||||| |||| ||||||||||
Sbjct 584 CGACATCTTGCGTGCTTGCAAGAG-CATTGTGAAGAAATCAGAACAAGGTTTGATCCGAG 642
Query 699 AGGAAGATGTAGACGAGGCATTGATCGAGAGAGAGCTTTTGACAAATTGTAGTGACTTCC 758
||||||| || |||||| | ||| | |||||||||||| ||| || |||| || ||||
Sbjct 643 AGGAAGAAGTGGACGAGACGTTGTTGGAGAGAGAGCTTCAGACCAAGTGTACAGAGTTCC 702
Query 759 CAAGTCCTGATTTAATGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGT 818
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CAAGTCCTGATCTCTTGATTAGGACAAGTGGAGAACAGAGGATTAGTAACTTCTTCTTGT 762
Query 819 GGCAACTTGCTTATTCCGAGCTTTTCTTCTCGCCGGTATTTTGGCCTGATTTCGATAAGG 878
||||||| |||||| ||||||| |||||||| ||||| ||||||||||||| || ||||
Sbjct 763 GGCAACTCGCTTATACCGAGCTCTTCTTCTCACCGGTCCTTTGGCCTGATTTTGACAAGG 822
Query 879 ATAAGCTTCTAGAGGCTCTTGCTTCGTATCAGCGTAGGGAAAGACGATTTGGTTGTCGGG 938
|||||||| |||| || || | |||||||||||| ||||||||||||||||| |||||||
Sbjct 823 ATAAGCTTTTAGACGCCCTGGATTCGTATCAGCGCAGGGAAAGACGATTTGGCTGTCGGG 882
Query 939 TTTGATCCACCTTTCATCCTCT 960
|||||||||| ||| |||||||
Sbjct 883 TTTGATCCACATTTGATCCTCT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5