BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23420.1
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481212 jgi|Araly1|481212|fgenesh2_kg.4__272__AT2G23420.1 2115 0.0
Ahg888342 jgi|Araly1|888342|Al_scaffold_0007_328 1598 0.0
> Ahg481212 jgi|Araly1|481212|fgenesh2_kg.4__272__AT2G23420.1
Length=2038
Score = 2115 bits (1145), Expect = 0.0
Identities = 1289/1356 (95%), Gaps = 20/1356 (1%)
Strand=Plus/Plus
Query 729 GTAATGTAGCAGCTGGAAAACTTTTTGGGATTCCTCTTCGTGGAACACACTCTCATGCTT 788
||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||
Sbjct 694 GTAATGTAGCAGCTGGAAAACTTTTTGGGATACCTCTCCGTGGGACACACTCCCATGCTT 753
Query 789 ATGTTAGCTCATTCATGAGTACTGATGAGATTGTTGACAAAGTACTTCGTAGTGCTGATG 848
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 754 ATGTTAGCTCATTCATGAGCACTGATGAGATTGTTGACAAAGTACTTTGCAGTGCTGATG 813
Query 849 GGAAAACCACGTGCGAGGATTTTGTTAGTCATGTTCAGACATGGTTAAAAAAGATTCAGT 908
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 814 GGAAAACCACGTGCGAGGATTTTGTCAGTCATGTTCAGACATGGTTAAAAAAGATTCAGT 873
Query 909 ATTCACCATCTCTAAGTGGCATTTTCTCTGAGACAAATCAAAGCGAGCTAGCAGCTTTCA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATTCACCATCTCTAAGTGGCATTTTCTCTGAGACAAATCAAAGCGAGCTAGCAGCTTTCA 933
Query 969 CCTCATATGCACTGGCATTCCCCAAAACTTTTCTTGCCCTCGTAGATACATACGATGTGA 1028
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 CCTCATATGCGCTGGCATTCCCCAAAACTTTTCTTGCCCTCGTAGATACATACGATGTGA 993
Query 1029 TGAAGAGTGGAATCCCTAACTTCTGTGCAGTTGCTTTAGCACTCAATGACTTTGGATATA 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 TGAAGAGTGGAATCCCTAACTTCTGTGCAGTTGCTTTAGCACTCAATGACTTTGGATATA 1053
Query 1089 AAGCATTAGGTATTAGACTGGATTCAGGTGATTTAGCTTATCTATCTAGAGAGGCCAGAA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1054 AAGCATTAGGTATTAGACTGGATTCAGGTGATTTAGCTTATCTATCTAGAGAGGCTAGGA 1113
Query 1149 ATTTCTTCTGCACGGTAGAGAGAGAACTAAAAGTGCCTGGTTTTGGGAAGATGGTCGTCA 1208
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1114 ATTTCTTCTGCACGGTAGAGAGAGAACTTAAAGTGCCCGGTTTTGGGAAGATGGTCGTCA 1173
Query 1209 CTGCTAGTAATGATCTAAATGAAGAGACGATTGACGCTTTAAATAAACAGGGACATGAGG 1268
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1174 CCGCTAGTAATGATCTTAATGAAGAGACGATCGACGCTTTAAATAAACAGGGACATGAGG 1233
Query 1269 TGGATGCTTTTGGCATCGGGACCTACTTGGTCACTTGCTATTCACAAGCGGCCTTAGGTT 1328
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 1234 TGGATGCTTTTGGCATCGGGACCTACTTAGTCACTTGCTATTCGCAAGCGGCTTTAGGTT 1293
Query 1329 GCGTTTTCAAACTTGTGGAGATAAACAATCAGCCTCGGATTAAACTTTCTGAAGATGTTA 1388
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GTGTTTTCAAACTTGTGGAGATAAACAATCAGCCTCGGATTAAACTTTCTGAAGATGTTA 1353
Query 1389 CAAAGGTATCAATACCGTGTAAAAAGCGAAGTTACAGATTATACGGCAAAGAAGGTTACC 1448
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1354 CAAAGGTATCAATACCGTGTAAAAAGCGAAGTTACAGATTATACGGGAAAGAAGGTTACC 1413
Query 1449 CTCTGGTAGATATAATGACTGGAGAGAACGAACCACCTCCAAAGGTTGGTGAGCGTTTAC 1508
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CTCTGGTGGATATAATGACTGGAGAGAACGAACCACCTCCAAAGGTTGGTGAGCGTTTAC 1473
Query 1509 TTTGTCGTCACCCATTCAACGAATCCAAAAGAGCATATGTAGTGCCACAACGTGTCGAAG 1568
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TATGTCGTCACCCATTCAATGAATCCAAAAGAGCATATGTAGTGCCACAACGTGTCGAAG 1533
Query 1569 AGCTCCTCAAATGTTATTGGCGTGGAAGTGCAGATGAAGCAAGAGAAGTATTACCGCCTT 1628
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1534 AGCTCCTCAAATGTTATTGGCGTGGAAGTGCAGATGAAGCAAGAGAAGAATTACCGCCTT 1593
Query 1629 TGAAAGAGATAAGAGACCGTTGCATCAAACAGCTCGAAAACATGCGACCTGATCATATGA 1688
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1594 TGAAAGAGATAAGAGAACGTTGCATCAAACAGCTCGAAAACATGCGACCCGATCATATGA 1653
Query 1689 GGAGATTAAACCCAACTCCTTATAAGGTTAGTGTAAGCGCAAAGCTGTACGATTTCATCC 1748
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1654 GGAGATTAAACCCAACTCCTTATAAGGTAAGTGTAAGCGCGAAGCTGTACGATTTCATCC 1713
Query 1749 ACTTCTTATGGCTAAACGAAGCACCTGTTGGTGAATTGCAGTGACAGAACAACCAAAAAG 1808
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1714 ACTTCTTATGGCTCAACGAAGCACCTGTTGGTGAATTGCAATGACAGAACAAACAAAAAG 1773
Query 1809 AAGAATCTGGTTTTGGTTTGGTGTAATGTATATA-ATTTATATACCACAGCATCACAAAT 1867
||||||||||||||| | | |||||||||| |||||||||||||| ||||||||||
Sbjct 1774 AAGAATCTGGTTTTGA---G-T--AATGTATATAGATTTATATACCACAACATCACAAAT 1827
Query 1868 ATGCAtttttttcacttttagtttctttttCTTACAACATTTTGATGATCTC-T-C---A 1922
| |||||| ||||||| |||||| ||| |||| ||||||||||||||||| | | |
Sbjct 1828 ACGCATTTCTTTCACTA--AGTTTCATTT-CTTAGAACATTTTGATGATCTCATACTTTA 1884
Query 1923 TTGTCGTAGTAAGTTTCATTTTCTTACTGAGGAAAGAAACTCTCTGCGTTCACTGGAACT 1982
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1885 TTGTCGTAGTAAGTTTCATCTTCTTACTGAGGAAAGAAACTCTCTGCGTTCATTGGAACT 1944
Query 1983 TTGTTTTCAACTGATTCAATAAGATTTTATATTTACAGCTGTAAACATACTGGAGACTGT 2042
|||||| ||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 1945 TTGTTTACAACTGATTCAATAAGATT--ATATTTACCGCTGTAAACATACTAGAAACTGT 2002
Query 2043 AAAAAC--ATTT-ACTCAAGTCAACGATTTTGGATC 2075
||||| |||| ||||||||||| |||||||||||
Sbjct 2003 AAAAATTTATTTTACTCAAGTCAAGGATTTTGGATC 2038
Score = 970 bits (525), Expect = 0.0
Identities = 573/596 (96%), Gaps = 3/596 (1%)
Strand=Plus/Plus
Query 131 GAGAACGGCTCAGAATTGGGTCAGAAGATCATTGACGGACCAACGAATCCAATGGTCACA 190
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 69 GAGAACGGCTCAGAATTGGGTC---AGATCATTGACGGACCAACCAATCCAATGGTCACA 125
Query 191 CCTTTACTCAATGATCTTTATCAATTCACCATGGCTTATGCTTATTGGAAAGCTGGCAAA 250
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 126 CCTTTACTCAATGATCTCTACCAATTCACCATGGCTTATGCTTATTGGAAAGCTGGCAAA 185
Query 251 CACAACGAACGATCCGTTTTCGATCTGTATTTTCGTAAGAACCCATTTGGTGGTGAGTAC 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 186 CACAACGAACGATCCGTTTTCGATCTGTATTTTCGTAAGAACCCATTTGGTGGTGAATAT 245
Query 311 ACTGTGTTTGCTGGATTAGAAGAGTGTGTTAAGTTCTTAGCCAATTTCAAATTGACTGAT 370
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 246 ACTGTGTTTGCTGGATTAGAAGAGTGTATTAAGTTCTTAGCCAATTTCAAATTGAGTGAT 305
Query 371 GAAGAAATCGATTTCGTTCAAGAGTGTTTGCCTGGATCTGAGGAAGCTTTTTGTGATTAT 430
||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||
Sbjct 306 GAAGAAATCGATTTCGTTCGTGATTGTTTGCCTGGATCTGAGGAAGCTTTTGGCGATTAT 365
Query 431 CTTAGAGGGCTTGATTGTTCTGATGTTGAAGTTTATGCAATTCCGGAAGGATCAGTTGTT 490
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 366 CTTAGAGGGCTTGATTGTTCTGATGTCGAAGTTTACGCGATTCCGGAAGGATCAGTTGTT 425
Query 491 TTTCCTAAAGTACCTCTCATGAGAGTTGAAGGACCTGTTGGTGTTGTTCAATTGTTGGAA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTTCCTAAAGTACCTCTCATGAGAGTTGAAGGACCTGTTGGTGTTGTTCAATTGTTGGAA 485
Query 551 ACTCCATTCCTCAATCTTGTCAATTTTGCATCTTTGGTAGCTACTAACGCAGCTAGGCAT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ACTCCATTCCTCAATCTTGTCAATTTTGCATCTTTGGTAGCTACTAACGCAGCTAGGCAT 545
Query 611 CGCTTTGTTGCCGGAAAATCTAAGAGTCTACTCGAGTTTGGTGCTCGAAGGGCTCAGGGT 670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CGCTTTGTTGCCGGAAAATCTAAGAGTCTACTCGAGTTTGGTGCTCGAAGGGCTCAGGGA 605
Query 671 CCGGATGGTGCAATAAGCGCATCAAAATATTGCTACCTTGGAGGTTTTGATGCAAC 726
||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||
Sbjct 606 CCGGATGGTGCAATAAGCGCATCGAAATATTGTTACCTTGGGGGTTTTGACGCAAC 661
> Ahg888342 jgi|Araly1|888342|Al_scaffold_0007_328
Length=1608
Score = 1598 bits (865), Expect = 0.0
Identities = 1341/1572 (85%), Gaps = 28/1572 (2%)
Strand=Plus/Plus
Query 159 TCATTGACGGACCAACGAATCCAATGGTCACACCTTTACTCAATGATCTTTATCAATTCA 218
||||| ||||||| || || ||||||||||||||| | ||||| |||||||| |||||||
Sbjct 47 TCATTAACGGACCCACTAACCCAATGGTCACACCTCTCCTCAACGATCTTTACCAATTCA 106
Query 219 CCATGGCTTATGCTTATTGGAAAGCTGGCAAACACA-ACGAACGATCCGT-TTTCGATCT 276
||||||| |||||||||||||||||||||||||| | ||||||||| || ||| ||| |
Sbjct 107 CCATGGCCTATGCTTATTGGAAAGCTGGCAAACA-ATCCGAACGATCTGTGTTT-GATTT 164
Query 277 GTATTTTCGTAAGAACCCATTTGGTGGTGAGTACACTGTGTTTGCTGGATTAGAAGAGTG 336
||||||||||||||| ||||||||||| || |||||| | |||||||| |||||||| ||
Sbjct 165 GTATTTTCGTAAGAATCCATTTGGTGGAGAATACACTATCTTTGCTGGTTTAGAAGAATG 224
Query 337 TGTTAAGTTCTTAGCCAATTTCAAATTGACTGATGAAGAAATCGATTTCGTTCAAGAGT- 395
| || ||| | || |||||||| |||||||||||||| |||||||| |||| || |
Sbjct 225 CATCAAATTCCTCGCTAATTTCAATTTGACTGATGAAGAGATCGATTTTGTTCGTGATTC 284
Query 396 GTTTGCCTGGATCTGAGGAAGCTTTTTGTGATTATCTTAGAGGGCTTGATTGTTCTGATG 455
| || ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 285 G-TTACCTGGATGTGAGGAAGCTTTTTGTGATTATCTTCGAGGACTTGATTGTTCTGACA 343
Query 456 TTGAAGTTTATGCAATTCCGGAAGGATCAGTTGTTTTTCCTAAAGTACCTCTCA-TGAGA 514
||||||| ||||||||| |||||||||||||||| || |||||||| ||| | | | |||
Sbjct 344 TTGAAGTGTATGCAATTTCGGAAGGATCAGTTGTCTTCCCTAAAGTTCCT-TTACTCAGA 402
Query 515 GTTGAAGGACCTGTTGGTGTTGTTCAATTGTTGGAAACTCCATTCCTCAATCTTGTCAAT 574
||||||| ||||||| |||||| ||||||||||||||||| || |||||||| |||||
Sbjct 403 ATTGAAGGTCCTGTTGCTGTTGTGCAATTGTTGGAAACTCCGTTTCTCAATCTCATCAAT 462
Query 575 TTTGCATCTTTGGTAGCTACTAACGCAGCTAGGCATCGCTTTGTTGCCGGAAAATCTAAG 634
| |||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 463 TATGCATCTTTGGTTGCTACTAATGCAGCAAGACATCGGTTTGTTGCCGGAAAATCTAAG 522
Query 635 AGTCTACTCGAGTTTGGTGCTCGAAGGGCTCAGGGTCCGGATGGTGCAATAAGCGCATCA 694
||| || ||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct 523 CTTCTGCTTGAGTTTGGTGCTCGAAGAGCTCAGGGACCCGATGGCGCAATAAGCGCATCA 582
Query 695 AAATATTGCTACCTTGGAGGTTTTGATGCAACAAGTAATGTAGCAGCTGGAAAACTTTTT 754
||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||| |||
Sbjct 583 AAATATTGCTACCTTGGAGGTTTTGATGCAACAAGCAATGTTGCAGCGGGAAGACTGTTT 642
Query 755 GGGATTCCTCTTCGTGGAACACACTCTCATGCTTATGTTAGCTCATTCATGAGTACT-GA 813
||||| ||||| ||||| || || || ||||||| |||||||||||||||||| || ||
Sbjct 643 GGGATACCTCTCCGTGGTACTCATTCCCATGCTTTTGTTAGCTCATTCATGAGC-CTTGA 701
Query 814 TGAGATTGTTGACAAAGTACTTCGTAGTGCTGATGGGAAAACCACGTGCGAGGATTTTGT 873
||| |||||||||||||| ||||| ||| |||||||||||| ||| || ||||||||| |
Sbjct 702 TGAAATTGTTGACAAAGTGCTTCGAAGTTCTGATGGGAAAAGCACTTGTGAGGATTTTAT 761
Query 874 TAGTCATGTTC-AGACATGGTTAAAAAAGATTCAGTATTCACCATC-TCTA-AGTGGCAT 930
| || || || | ||||| ||| | ||||||| ||||| | || | || | || ||
Sbjct 762 TTGTT-TGGTCCAAACATGCCTAACTAGGATTCAGAATTCATCTTCAT-TACAA-GGAAT 818
Query 931 TTTCTCTGAGACAAATCAAAGCGAGCTAGCAGCTTTCACCTCATATGCACTGGCATTCCC 990
||| || |||||||||||||||||||| ||||| |||| ||||||||||||||||||||
Sbjct 819 TTTTTCCGAGACAAATCAAAGCGAGCTTGCAGCATTCATTTCATATGCACTGGCATTCCC 878
Query 991 CAAAACTTTTCTTGCCCTCGTAGATACATACGATGTGATGAAGAGTGGAATCCCTAACTT 1050
|| | ||||| || || ||||| || ||||||||||||||||||||||| || |||||
Sbjct 879 GAACTCCTTTCTCGCTCTTGTAGACACTTACGATGTGATGAAGAGTGGAATTCCAAACTT 938
Query 1051 CTGTGCAGTTGCTTTAGCACTCAATGACTTTGGATATAAAGCATTAGGTATTAGACTGGA 1110
|||||| |||||| ||||||| ||||| || ||||| |||||| | ||||||||||||||
Sbjct 939 CTGTGCTGTTGCTCTAGCACTTAATGAATTGGGATACAAAGCAGTGGGTATTAGACTGGA 998
Query 1111 TTCAGGTGATTTAGCTTATCTATCTAGAGAGGCCAG-AAATT-TCTTCTGCACGGTAGAG 1168
||||||||||||||| ||||| |||| |||| ||| ||||| | || ||| | |||||
Sbjct 999 TTCAGGTGATTTAGCCTATCTGTCTACTGAGGTCAGGAAATTCTTTTGTGC-CA-TAGAG 1056
Query 1169 AGAGAACTAAAAGTGCCTGGTTTTGGGAAGATGGTCGTCACTGCTAGTAATGATCTAAAT 1228
| ||| || ||||| || | ||| ||||||||| || ||||||||||||| ||||||||
Sbjct 1057 AAAGACCTCAAAGTTCCCGATTTCGGGAAGATGATCATCACTGCTAGTAACGATCTAAAC 1116
Query 1229 GAAGAGACGATT-GACGCTTTAAATAAACAGGGACATGAGGTGGATGCTTTTGGCATCGG 1287
|||||||| | | || ||| ||||||||||||| ||||| || ||||| ||||| || ||
Sbjct 1117 GAAGAGAC-AGTCGATGCTCTAAATAAACAGGGTCATGAAGTAGATGCATTTGGAATTGG 1175
Query 1288 GACCTACTTGGTCACTTGCTATTCACAAGCGGCCTTAGGTTGCGTTTTCAAACTTGTGGA 1347
||| |||| || ||||||||| ||||||| || |||||||| ||||||||||| |||||
Sbjct 1176 AACCAACTTAGTAACTTGCTATGCACAAGCTGCGTTAGGTTGTGTTTTCAAACTGGTGGA 1235
Query 1348 GATAAACAATCAGCCTCGGATTAAACTTTCTGAAGATGTTACAAAGGTATCAATACCGTG 1407
|||||||||||||||||||| ||||||||||||||||| || |||||||| ||||| ||
Sbjct 1236 AATAAACAATCAGCCTCGGATCAAACTTTCTGAAGATGTAACTAAGGTATCGATACCATG 1295
Query 1408 TAAAAAGCGAAGTTACAGATTAT-ACGGCAAAGAAGGTTACCCTCTGGTAGATATAATGA 1466
||||||||| | ||||||||||| | || ||||| ||||||||||| || ||||||||||
Sbjct 1296 TAAAAAGCGTATTTACAGATTATTA-GGAAAAGAGGGTTACCCTCTTGTTGATATAATGA 1354
Query 1467 CTGGAGAGAACGAACCACCTCCAAAGGTTGGTGAGCGTTTACTTTGTCGTCACCCATTCA 1526
|||||||||||||||||||||| ||||| ||||| | |||||||| ||||| |||||||
Sbjct 1355 CTGGAGAGAACGAACCACCTCCGAAGGTCGGTGAAAGGTTACTTTGCCGTCATCCATTCA 1414
Query 1527 ACGAATCCAAAAGAGCATATGTAGTGCCACAACGTGTCGAAGAGCTCCTCAAATGTTATT 1586
| ||||| ||||| || ||||| ||||||||||| || |||||||| || ||||||||||
Sbjct 1415 ATGAATCGAAAAGGGCTTATGTGGTGCCACAACGCGTTGAAGAGCTTCTGAAATGTTATT 1474
Query 1587 GGCGTGG-AAGTGCAGATGAAGCAAGAGAAGTAT-TACCGCCTTTGAAAGAGATAAGAGA 1644
||||||| || |||||||||||| || |||| | || ||| ||||||||| ||||| |
Sbjct 1475 GGCGTGGCAA-TGCAGATGAAGCTAGGGAAG-AGCTAGAGCCATTGAAAGAGCTAAGAAA 1532
Query 1645 CCGTTGCATCAAACAGCTCGAAAACATGCGACCTGATCATATGAGGAGATTAAACCCAAC 1704
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 1533 CCGTTGCATCAAACAGCTCGAAAACATGCGACCCGATCATATGAGAAGATTAAACCCTAC 1592
Query 1705 TCCTTATAAGGT 1716
||||||||||||
Sbjct 1593 TCCTTATAAGGT 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78046912005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5