BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23430.1
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481213 jgi|Araly1|481213|fgenesh2_kg.4__273__AT2G23430.1 1186 0.0
> Ahg481213 jgi|Araly1|481213|fgenesh2_kg.4__273__AT2G23430.1
Length=909
Score = 1186 bits (642), Expect = 0.0
Identities = 849/940 (90%), Gaps = 50/940 (5%)
Strand=Plus/Plus
Query 18 ttcttcttcttcctcatcctctcaatcata----tctctctctctc---aCAGAGATTGT 70
||||||||||||||| |||||||||||||| |||||||||||| |||||||| |
Sbjct 1 TTCTTCTTCTTCCTCGTCCTCTCAATCATATCTCTCTCTCTCTCTCTTTTCAGAGATTTT 60
Query 71 GACTTCACGCACACGTAACCTAAATCGAAGATGGTGAGAAAATATAGAAAAGCTAAAGGA 130
||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 61 GACTTCACGCACACGTAACCTAAATCGAAGATGGTGAGAAAATGTAGAAAAGGTGAAGGA 120
Query 131 ATTGTAGAAGCTGGAGTTTCGTCAACGTATATGCAGCTACGGAGCCGGAGAATTGTTTAT 190
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 121 ATCGTAGAAGCTGGAGTTTCGTCAACGTATATGCAGCTTCGTAGCCGGAGAATTGTTTAT 180
Query 191 GTTAGATCGGAAAAATCAAGCTCTGTCTCCGTCGTCGGTGATAATGGAGTTTCGTCGTCT 250
|||||||||| ||| ||||| | | || |||||||||||||||||||||||||
Sbjct 181 GTTAGATCGG--AAA--AAGCT-AG----C-TC--CGGTGATAATGGAGTTTCGTCGTCT 228
Query 251 TGTAGTGGAAGCAATGAATATAAGAAGAAAGAATTAATACATCTGGAGGAGGAAGATAAA 310
||| |||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||
Sbjct 229 TGTTGTGGAAGCAATGAATATAAGAACAATGAATTTATAGATCTGGAGGAGGAAGATAAA 288
Query 311 GATGGTGACACTGAAACGTCGACGTATCGACGGGGTACGAAGAGGAAGCTTTTTGAAAAT 370
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 289 GATGGTGACACTGAAACGTCGGCGTATCGACGGAGTACGAAGAGGAAGCTTTTCGAAAA- 347
Query 371 C-TGAGAGAGGAGGAGAAAGAAGAATTAAGTAAATCCATGGAGAATTATTCATCGGAATT 429
| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 348 CATGAGAGAGGAGGAGAAAGAAGAATTAAGTAAATCTATGGAGAGTTATTCATCGGAATT 407
Query 430 TGAATCGGCGGTTAAAGAATCGTTAGATTGTTGTTGTAGCGGGAGGAA-AACGATGGAGG 488
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |||||
Sbjct 408 TGAATCGGCGGTTAAAGAATCGTTAGATTGTTGTTGTAGCGGGA-GAAGAACCACGGAGG 466
Query 489 AGACGGTGACGGCGGAGGAGGAGGAGAAGGCGAAATTGATGACGGAGATGCCAACGGAAT 548
|||| | |||| | || ||||||||| |||||||| || ||| ||||||||||||||||
Sbjct 467 AGACTGCGACGAC-GA--AGGAGGAGATGGCGAAATCGACGACTGAGATGCCAACGGAAT 523
Query 549 CGGAAATTGAAGAtttttttGTGGAAGCTGAGAAACAACTCAAAGAAAAATTCAAGAAGA 608
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 524 CGGAAATTGAAGATTTTTTTGTGGAAGCTGAGAAACAGCTCAATGAAAAATTCAAGAAGA 583
Query 609 AGTACAATTTCGATTTCGAGAAGGAGAAGCCATTAGAAGGACGTTACGAATGGGTAAAGT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGTACAATTTCGATTTCGAGAAGGAGAAGCCATTAGAAGGACGTTACGAATGGGTAAAGT 643
Query 669 TAGAGTGAAGAA---GAAGAAGAAGTTTATGGttttttttttaacttttt-agattttaa 724
|||||||||||| |||||||||||||||| ||| | ||| |||||||| ||||||||
Sbjct 644 TAGAGTGAAGAAAAAGAAGAAGAAGTTTATG-TTTATATTT-AACTTTTTTAGATTTTA- 700
Query 725 tatttcagggaataagttaatttt-atttt-----gttgatttGGAAATATAAGATTTGT 778
| |||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||
Sbjct 701 T-TTTCAGAGAATAAGTTAATTTTTATTTTATTTTGTTGATTTCGAAATAGGAGATTTGT 759
Query 779 AGGAGGAATGTTTTTAGAAGTACGAAATTGCACAGAAAAAGAAGAAAGCTTTTTAACAGA 838
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AGAAG-AATGTTTTTAGAAGTACGAAATTGCACAGAAAAAGAAGAAAGCTTTTTAACAGA 818
Query 839 TTTTAGAGCCCAGAAAAGTCGTGTCTTTTAGCTCTACTTTTACCTCTTCTTCGAATCTTG 898
||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 819 TTT-AGAGCCCAGAAAAGTCGTGTCTTTTAGCTCTACTTTTACCTCTTCTTCT--TC--G 873
Query 899 TGTATCTTTTAGCATATTCTTTAGTACATTTTTATGTTTT 938
|||||| ||||||||||| ||||||||||| ||||||
Sbjct 874 A--ATCTTT-AGCATATTCTT-AGTACATTTTTTTGTTTT 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35263698225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5