BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G23440.1

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932342 jgi|Araly1|932342|scaffold_400330.1                        357    4e-98


> Ahg932342 jgi|Araly1|932342|scaffold_400330.1
Length=286

 Score =  357 bits (193),  Expect = 4e-98
 Identities = 256/285 (90%), Gaps = 10/285 (4%)
 Strand=Plus/Plus

Query  58   TCGTCTCGGTTTTTCTAG-T-AATGGCGACGA-TTAATGTTTACGTTTTTGCATTTATCT  114
            |||||||||||||| | | | |||||||| || ||||||||||| |||||||||||||||
Sbjct  1    TCGTCTCGGTTTTT-T-GATCAATGGCGA-GAGTTAATGTTTACCTTTTTGCATTTATCT  57

Query  115  TTCTTTTGACTATTAGTGTTGGTTCAATTGAAGGCCGAAAACTCACCAAATTCACCGTAA  174
            ||||||||||||||| | ||||||| ||||||||||||| ||||||||| | ||||||||
Sbjct  58   TTCTTTTGACTATTACTATTGGTTCCATTGAAGGCCGAACACTCACCAAGTCCACCGTAA  117

Query  175  CGACGTCTGAGGAAATCAGAGCTGGTGGCTCTGTATTGTCGTCGTCACCTCCGACTGAGC  234
            ||||||||||||||||| |||||| |||| |||| ||| | | |||||| ||| |||| |
Sbjct  118  CGACGTCTGAGGAAATCGGAGCTGATGGCCCTGTGTTG-C-T-GTCACCACCGGCTGAAC  174

Query  235  CACTTGAGTCGCCGCCGAGCCACGGGGTTGATACCTTCAGACCTACGGAACCTGGTCATA  294
            ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||
Sbjct  175  CACTTGAGTCGCCGCCGAGCCACAGGGTTGATACCTTCAGACCCACGGCACCTGGACATA  234

Query  295  GCCCCGGTATTGGACATTCCGTACATAATTAACGGAGAGG-AACA  338
            ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  235  GCCCCGGTATTGGACATTCCGTACACAATTAACGGAGAGGGAACA  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14918835299


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5