BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23450.2
Length=2502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932344 jgi|Araly1|932344|scaffold_400332.1 3014 0.0
> Ahg932344 jgi|Araly1|932344|scaffold_400332.1
Length=2158
Score = 3014 bits (1632), Expect = 0.0
Identities = 1994/2168 (92%), Gaps = 27/2168 (1%)
Strand=Plus/Plus
Query 191 aggaagGTGATGAATGTTGAGATCGATTTTTGATTTCAATCAACGTTCAACGAAGATGGT 250
||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 8 AGGTAGGTGATGAATATTGAGATCGA----T--TTTCAATCAACGTTCAACGAAGATGGT 61
Query 251 GATGATTTCTCATAAGTTGGATTTGATTTTGGTTTTCATAATCGTAATCGGAGGATCTAT 310
||||||||||||||| ||| ||||||||||||| || || |||||||||||||||||
Sbjct 62 GATGATTTCTCATAACTTGAATTTGATTTTGGTGATCGTATTCGTAATCGGAGGATCT-G 120
Query 311 TTTCCGACGAGT-TTCTGCTAATTTCACCGTACCTTGTAACGGAAGATGCGGTGGATTGA 369
|||| | | | ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 121 TTTCTTTC---TCCGCGGCTAATTTCACTGAACCTTGTAACGGAAGATGCGGTGGATTGA 177
Query 370 CTCTGCCTTATCCTTTCGGGTTTTCAAACGGTTGTTC-GATCCGATTCGATTGCTCTGCG 428
||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||
Sbjct 178 CTCTGCCTTATCCTTTCGGATTTTCAAACGGTTG-TCGGATCCAATTCGATTGCTCTGCG 236
Query 429 GCGGAGAAACCGATGATCGGAGACTTTTCCGTTCAAAACGTGACGGAAAACAGTATATTT 488
| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 237 GTGGAGAAACCGATGATCGGAGACTTTTCCGTCCAAAACGTGACGGAAGACGGTATATTT 296
Query 489 GTCGGTCTCTCTCACAATTGTACTCGGAAGATTGAAGATATGA-ATCCGCTTTTCGGCGA 547
||||||||| |||||||||| |||||||||||||||||||||| | ||||| ||||||||
Sbjct 297 GTCGGTCTCCCTCACAATTGCACTCGGAAGATTGAAGATATGAGA-CCGCTATTCGGCGA 355
Query 548 GAATTTCGCACCAACGTCGGAGAACAGTTTCTTGATGGAGAATTGTAACCGTACCACCGA 607
| |||||||||| ||||||||||| |||||| | |||||| ||||| ||| || ||
Sbjct 356 GCATTTCGCACCGACGTCGGAGAATAGTTTCCTAATGGAGGATTGTGTGAATACAACTGA 415
Query 608 TGGTTGCTCTATCAAGCAGAAGTTTC-TGGAGAATGTGCTGAAACTCAAAAGTTGTGATG 666
||||||||| ||||| |||||| ||| |||||||||||||||| || ||||||| |||
Sbjct 416 TGGTTGCTCGATCAATCAGAAG-TTCTTGGAGAATGTGCTGAATCTGGAAAGTTGCGATT 474
Query 667 CTACTGGAAACATAAGTTGTTTTTCTTTAGATAGTAATTCGAGTTCGAAGAACTCAGCTA 726
| | |||||||| ||||||||||| || |||| |||||| |||||||| || ||||| |
Sbjct 475 CGAAGGGAAACATTAGTTGTTTTTCCTTGGATACTAATTCAAGTTCGAAAAATTCAGCCA 534
Query 727 AGTTTTTCAGTATGAA-GACATTAAGGAACAGCTCGTGTAGTTTGTTGTTCTCGTCGATA 785
|||||||||||||||| || ||| |||||||||||||||||||||||||| || ||||||
Sbjct 535 AGTTTTTCAGTATGAAGGA-ATTGAGGAACAGCTCGTGTAGTTTGTTGTTTTCTTCGATA 593
Query 786 GCTTTCGAGTCTGTAGGTGTGAATGCGGGTATAGCGTTAGAGTTTGAGCGAGTTCGGTTA 845
||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 594 GCTTTTGAGTCTGGAGGTCTGAATGCGGGTATAGCGCTAGAGTTTGAGCGAGTTAGGTTA 653
Query 846 GGTTGGTGGCTT-AAGGGAGGTTGCGAGAGCGGAACTTGCGCGGCTAACACCGATTGTAC 904
||||||||| || || ||| ||||| | | | | ||||||||||||||||| |||||||
Sbjct 654 GGTTGGTGG-TTAAAAGGAAGTTGCAAAAACAGTCCTTGCGCGGCTAACACCAATTGTAC 712
Query 905 AGACGTTGAAACTCCTCATGGATATGCAGGACACCGGTGCTCATGTCTTGACGGTTTCCA 964
||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||| |||
Sbjct 713 AGACGTTGATACTCCTCATGGATATGCGGGATACCGGTGCTCATGTCTTGAGGGTTACCA 772
Query 965 CGGTGACGGATACACCAACCCTTGCCAGAGAGCACTACCGGAGTGCCGTGGTTCCAAGCT 1024
|| ||||||| || ||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct 773 TGGAGACGGATTCATCAAGGCGTGCCAGAGAGCCCTACCGGACTGCCGTGGTTCCAAGCT 832
Query 1025 CGTCTGGAGACATTGTAGATCTAATCTTATTACTATTGTAGGAGGAACTGTTGGTGGAGC 1084
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CGTCTGGCGACATTGTAGATCTAATCTTATTACTATTGTAGGAGGAACTGTTGGTGGAGC 892
Query 1085 GTTTTTACTAGCTGCCTTGGCTTTTTTCTTCTTTTGTAAGCGGAGACGGTCTACTCCTTT 1144
|||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 893 GTTTTTGCTAGCTGGCTTGGCTCTTTTGTTCTTTTGTAAGCGGAGACGGTCTACTCCTTT 952
Query 1145 GAGAAGTCATTTAAGCGCAAAGCGTCTTTTGTCTGAAGCTGCAGGGAACTCGAGTGTCGC 1204
|||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 953 GAGAAGCCATTTAAGCGCAAAGCGGCTTTTGTCTGAAGCTGCAGGAAACTCAAGTGTCGC 1012
Query 1205 CTTTTTCCCTTACAAGGAAATCGAGAAAGCGACAGATGGTTTCTCTGAAAAGCAGAAGTT 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1013 CTTTTTCCCTTACAAGGAAATCGAGAAAGCGACAGATGGTTTCTCTGAAAAGCAGCAGCT 1072
Query 1265 AGGAATAGGTGCATATGGTACGGTCTATAGAGGAAAGCTCCAAAATGATGAATGGGTTGC 1324
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGGAGTAGGTGCATACGGTACGGTCTATAGAGGAAAGCTCCAAAATGATGAATGGGTTGC 1132
Query 1325 TATCAAAAGACTTAGACATAGAGATTCAGAAAGTCTTGACCAAGTCATGAATGAGATCAA 1384
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TATCAAAAGACTCAGGCACAGAGATTCAGAAAGTCTTGACCAAGTCATGAATGAGATCAA 1192
Query 1385 GCTTCTTTCCTCTGTGAGTCACCCGAATCTTGTCCGTCTCTTAGGATGTTGTATAGAACA 1444
||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1193 GCTTCTTTCCTCTGTAAGTCACCCAAATCTTGTTCGTCTCTTAGGATGCTGTATAGAACA 1252
Query 1445 AGGCGATCCAGTTCTCGTTTATGAGTACATGCCGAATGGAACTCTATCTGAACATCTACA 1504
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1253 AGGCGATCCAGTTCTCGTTTATGAGTACATGCCGAATGGAACTCTATCAGAACATCTACA 1312
Query 1505 AAGAGATAGAGGGAGTGGTCTTCCATGGACCTTGCGTCTCACTGTTGCTACTCAAACAGC 1564
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 1313 GAGAGATAGAGGGAGTGGTCTTCCATGGACCTTACGCCTCACTGTTGCCACTCAAACTGC 1372
Query 1565 TAAAGCAATCGCGTATCTCCACTCTTCAATGAACCCACCGATCTATCACCGTGACATCAA 1624
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1373 TAAAGCAATCGCGTATCTCCACTCTGCAATGAACCCACCGATCTATCACCGTGACATCAA 1432
Query 1625 ATCTACCAATATCCTTCTTGATTATGATTTCAACTCCAAAGTTGCGGATTTCGGACTCTC 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ATCTACCAATATCCTTCTTGATTATGATTTCAACTCCAAAGTTGCGGATTTCGGACTCTC 1492
Query 1685 TAGACTGGGAATGACGGAATCTTCTCACATATCAACGGCTCCTCAAGGGACTCCTGGTTA 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TAGACTGGGAATGACGGAATCTTCTCACATATCAACGGCTCCTCAAGGGACTCCTGGTTA 1552
Query 1745 TCTTGACCCGCAGTACCATCAATGCTTTCATCTCTCTGATAAGAGCGACGTCTACAGCTT 1804
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 1553 TCTTGACCCGCAGTACCATCAATGCTTCCATCTTTCTGATAAAAGCGACGTCTACAG-TT 1611
Query 1805 T-GGAGTCGTCCTTGCCGAGATTATAACGGGATTGAAAGTCGTTGATTTCACACGTCCAC 1863
| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1612 TCGGAGTCGTCCTTGCCGAGATTATAACAGGATTGAAAGTCGTTGATTTCACCCGCCCAC 1671
Query 1864 ATACCGAAATCAACCTAGCGGCTCTTGCTGTTGACAAAATCGGGTCAGGTTGTATCGATG 1923
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 ATACCGAAATCAACCTAGCAGCTCTTGCTGTTGACAAAATCGGGTCAGGTTGTATCGATG 1731
Query 1924 AGATAATAGACCCGATTCTTGACTTGGATCTCGACGCATGGACTCTCTCATCCATACACA 1983
|||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 1732 AGATTATAGACCCGATTCTTGACCTGGATCTCGACGCATGGACACTCTCATCAATACACA 1791
Query 1984 CGGTGGCTGAGCTTGCATTTCGATGCTTAGCCTTCCACAGTGACATGAGACCGACAATGA 2043
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1792 CAGTGGCTGAGCTCGCATTTCGATGCTTAGCCTTCCACAGCGACATGAGACCGACAATGA 1851
Query 2044 CCGAAGTAGCGGACGAGCTTGAACAGATAAGACTCAGTGGTTGGATTCCAAGCATGAGCT 2103
| |||||||| |||||||| ||||||||| |||||| ||||||||||||| ||||||||
Sbjct 1852 CTGAAGTAGCAGACGAGCTCGAACAGATACGACTCAACGGTTGGATTCCAAACATGAGCT 1911
Query 2104 TGGATTCACCAGCCGGTTCTCTCCGTTCATCTGATCGAGGAAGCGAAAGATCAGTTAAAC 2163
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1912 TGGATTCACCAGCCGGTTCTCTCCGGTCATCTGATCGAGGAAGCGAAAGATCAGTTAAAC 1971
Query 2164 AATCATCAATAGGAAGCAGAAGAGTCGTTATCCCTCAGAAACAACCTG-ATTGCCTCGCA 2222
||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1972 AATCATCAACAGGAAGCAGAAGAGTCGTTATCCCTCAGAAACAAC-TGGATAACCTCGCT 2030
Query 2223 TCCGTCGAAGAGATTAGCGATAGCTCACCCATCTCAGTTCAAGATCCTTGGTTAAGTGCA 2282
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 TCCGTTGAAGAGATTAGCGATAGCTCACCCATCTCAGTTCAAGATCCTTGGTTAAGTGCA 2090
Query 2283 CAAAGCTCACCGTCTACAAATACATTGCTCGGTAACATTCCAAGATGATAGT-ATGATCT 2341
|| |||||||| |||||||||||||||||||||||||||||||| ||||| | | |||||
Sbjct 2091 CAGAGCTCACCTTCTACAAATACATTGCTCGGTAACATTCCAAGGTGATAATGA-GATCT 2149
Query 2342 CAAAACAC 2349
||| ||||
Sbjct 2150 CAAGACAC 2157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94311446620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5