BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23460.1
Length=3065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899665 jgi|Araly1|899665|Al_scaffold_0004_315 3829 0.0
Ahg481217 jgi|Araly1|481217|fgenesh2_kg.4__277__AT2G23470.1 62.1 2e-08
> Ahg899665 jgi|Araly1|899665|Al_scaffold_0004_315
Length=2676
Score = 3829 bits (2073), Expect = 0.0
Identities = 2495/2693 (93%), Gaps = 51/2693 (2%)
Strand=Plus/Plus
Query 229 TGAAAGAAGATGATTGTTGTTTATTCGCTGAAGAATACGATGGTCCACCATTATCATACA 288
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2 TGAAAGAAGATGATTGTTGTTTGTTCGCTGAAGAATACGATGGTCCACCATTATCATACA 61
Query 289 ATATCCCTTGTGCTGTTCCTATTAACGTCGAGAAAATCCCAGTCGCCGCCGTTGTTTCTC 348
|||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| ||||
Sbjct 62 ATATCCCTTGTGCTCTTCCGATTAACGTTGAGAAAATCCCCGTCGCCGCCGTTGTGTCTC 121
Query 349 CGGTTTGTATTTCCGATAACATGT-CTTTCCCTGTGATTCAACCGATTTTATCAGTAGAG 407
||||||||||||| |||||||||| |||| ||||||||||||||||||||| | || |||
Sbjct 122 CGGTTTGTATTTCTGATAACATGTCCTTT-CCTGTGATTCAACCGATTTTAGCTGTGGAG 180
Query 408 AGTA--AA-AAGTTTCTGATAGATTCGGTTTCTCCTACTTCTGTTATAGCTAATTGTGGA 464
|||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AGTACTAAGAAGTTTCTGAGAGATTCGGTTTCTCCTACTTCTGTTATTGCTAATTGTGGA 240
Query 465 TCTAATCAGCTTGAATTGGTTTCTGATTCAATCACTGTTTCTCCTACTTCGGTTATTGAA 524
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 TCTAATGAGCTTGAATTGGTTTCTGATTCAATCACTGTTTCGCCTACTTCGGTTATTGAG 300
Query 525 CATACTGAGgaagaagaagaagaagaagGT--GG--TGATGG--TGAG--GAT-T-GTGA 574
||||| ||||||||||||| | || ||| || || ||| | || | | | ||||
Sbjct 301 CATACGGAGGAAGAAGAAGGTGGTGATGGTGAGGATTG-TGGAATAAGTAGCTCTGGTGA 359
Query 575 ---A---TTGA-G--TAGCTCTGGAGAGTTATTG-T---T-GA-GG-T-CTTGTTCAGTG 617
| |||| | | | ||| | |||| ||| | | | || | ||||||||||
Sbjct 360 GTTATTGTTGAGGTCTTGTTCT-GTTAGTT-TTGATCAATCTAGGGTTAGTTGTTCAGTG 417
Query 618 AAAGAGAGTTTAGACTTGAATGAGTCGTCTTCGAATCCGTTAGTACCGGATTGGGAATCG 677
|||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 418 AAAGAGAGCTTAGATTTGAATGA---ATCATCGAACCCGTTAGTACCGGATTGGGAATCG 474
Query 678 AATGAGTCAGTTTTGAGTATGGATTACCCGTCGTCTCGTGTTACTGGAGATTGTGTTAGT 737
|||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 475 AATGAGTCGGTTTTGAGTATGGATTATCCGTCTTCTCGGGTTACTGGAGATTGTGTTAGT 534
Query 738 GAGACTAATGGTGATGGTAAGAAGCAACCAGTTGTTACTTTCTTGGGTATTGCTTCTGAT 797
|| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 GAAAGTAATGGAGATGGTAAGAAGCAACCAGTTGTTACTTTCTTAGGTATTGCTTCTGAT 594
Query 798 GATGGATTTGAGGAAGAGGAGAGTTGTAGTAACCTGAGGCGGGTTCGGGTTGTACCGGTT 857
||||| ||||||||||||||||| | | |||||| || ||||||||||||| | ||||||
Sbjct 595 GATGGCTTTGAGGAAGAGGAGAG-T-T-GTAACCAGAAGCGGGTTCGGGTTATGCCGGTT 651
Query 858 AAGAAACAGCCGCAGACGAAAGGTAAGAAGGGTTCTTGTTATCGGTGTTTTAAAGGGAGT 917
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 652 AAGAAACAGCCTCAGACGAAAGGTAAAAAGGGGTCTTGTTATCGGTGTTTTAAAGGGAGT 711
Query 918 AGGTTTACGGAGAAGGAAGTGTGT-TTAGTTTGTGATGCTAAGTATTGTAATAGCTGTGT 976
||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 712 CGGTTTACGGAGAAGGAAGTGTGTCTT-GTTTGTGATGCTAAGTATTGTAGCAGCTGTGT 770
Query 977 GCTTAGAGCTATGGGTTCTATGCCTGAAGGAAGGAAATGTGTTACTTGTATTGGCTTTCC 1036
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 771 GCTTCGAGCTATGGGTTCTATGCCTGAAGGAAGGAAATGTGTTACTTGTATTGGGTTTCC 830
Query 1037 TATTGATGAATCGAAGCGAGGGAGTTTAGGGAAATGCTCTAGGATGCTTAAGAGGTTGCT 1096
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 831 GATTGATGAATCGAAGCGAGGGAATTTAGGGAAATGCTCTAGGATGCTTAAGAGGTTACT 890
Query 1097 TAATGATTTGGAGGTTAAACAGATTATGAAGACTGAGAGGTTTTGTGAAGCTAATCAGTT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 891 TAATGATTTGGAGGTTAAACAGATTATGAAGACTGAGAGGTTTTGTGAAGCTAATCAATT 950
Query 1157 ACCAGCTGAGTATGTGTATGTTAATGGACAACCTCTTTACCCTGAAGAGCTGGTTACACT 1216
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 951 ACCGGCTGAGTATGTGTATGTTAATGGACAACCTCTCTACCCTGAAGAGCTGGTTACACT 1010
Query 1217 TCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGT 1276
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1011 TCAGACTTGCTCTAATCCTCCGAAGAAGCTGAAACCGGGGGACTATTGGTATGATAAAGT 1070
Query 1277 GTCTGGACTTTGGGGAAAGGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAA 1336
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1071 GTCTGGACTTTGGGGAAAGGAAGGAGAGAAGCCTTATCAGATTATTAGTCCCCATCTGAA 1130
Query 1337 TGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACGG 1396
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TGTTGGAGGTCCTATTAGTCCAGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACGG 1190
Query 1397 TCGGGAGATTACAAAAGTGGAGCTACGAATGCTGCAGTTGGCAGGAGTTCAATGTGCGGG 1456
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ACGCGAGATTACAAAAGTGGAGCTACGAATGCTGCAGTTGGCAGGAGTTCAATGTGCGGG 1250
Query 1457 TAACCCACATTTTTGGGTTAACGAGGATGGATCGTATCAAGAAGAAGGACAGAAGAATAC 1516
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1251 TAACCCTCATTTTTGGGTTAACGAAGATGGATCGTATCAAGAAGAAGGACAGAAGAATAC 1310
Query 1517 CAAGGGATACATATGGGGCAAGGCTGGGACTAAGTTACTTTGTGCTGTATTGTCACTTCC 1576
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1311 CAAGGGATACATATGGGGCAAGGCTGGGACTAAGTTACTATGTGCTGTATTGTCACTTCC 1370
Query 1577 TGTACCGTCAAAATCTACCGCGAATGCTTCTGGGGAACAACTCTATAGCGCAAATAGCAG 1636
||| || || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1371 TGTTCCATCTAAATCTACTGCGAATGCTTCTGGGGAACAACTGTATAGCGCAAATAGCAG 1430
Query 1637 AAGCATTCTGGACCATCTTGAGCATAGGACTTTGCAAAAAATTCTT-TTGGTTGGAAACA 1695
||||||| ||||||||||||||||||||||||| || |||||| || |||||||||||||
Sbjct 1431 AAGCATTTTGGACCATCTTGAGCATAGGACTTTACAGAAAATT-TTGTTGGTTGGAAACA 1489
Query 1696 GTGGTTCTGGAACTAGCACAATATTCAAGCAGGCAAAGATCCTTTATAAGGACGTACCAT 1755
| |||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1490 GAGGTTCTGGAACTAGTACCATATTCAAGCAGGCAAAGATCCTTTACAAGGACGTGCCAT 1549
Query 1756 TCTTGGAAGATGAGCGTGAAAACATAAAGGTGATTATCCAGACCAATGTGTATGGTTATC 1815
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1550 TCTTGGAAGATGAGCGTGAAAATATAAAGGTGATTATCCAGACCAATGTGTATGGTTATC 1609
Query 1816 TCGGTATGCTTCTTGAGGGCCGGGAGCGGTTTGAAGAAGAAGCTCTTGCTCTCAGGAACA 1875
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1610 TCGGTATGCTTCTTGAGGGCCGGGAGCGGTTTGAAGAAGAAGCTCTTGCTGTCAGGAACA 1669
Query 1876 CGAAGCAGTGTGTCCTTGAAAATATACCTGCAGATGAAGGAGATGCGAAAAGCAACGACA 1935
| |||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1670 CTAAGCAGTGTGTCATTGAAAATATTCCTGCAGATGAAGGAGATGCTAAAAGCAACTACA 1729
Query 1936 AAACCGTCACCATGTACTCCATTGGCCCGAGGCTTAAAGCATTTTCTGATTGGCTATTAA 1995
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1730 AAACC---A---TGTACTCCATTGGCCCAAGGCTTAAAGCATTTTCTGATTGGCTATTAA 1783
Query 1996 AGACTATGGCTGCTGGAAATCTTGGGGTCATTTTCCCTGCAGCCTCTCGTGAGTATGCGC 2055
|||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||
Sbjct 1784 AGACTATGGCTGCTGGAAATCTCGGTGTCATTTTCCCTGCAGCTTCCCGTGAGTATGCGC 1843
Query 2056 CACTAGTTGAGGAGTTATGGAGGGATGCAGCTATCCAAGCTACATACAAACGGAGAAGTG 2115
|||| ||||| ||||||||||||||| |||| ||||||||||||||||| || ||||| |
Sbjct 1844 CACTGGTTGAAGAGTTATGGAGGGATACAGCGATCCAAGCTACATACAAGCGAAGAAGCG 1903
Query 2116 AGCTAGGACTCCTTCCCAGTGTCGCTAGTTACTTCTTGGAGCGGGCTATTGACGTGTTGA 2175
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1904 AGCTAGGACTCCTTCCGAGTGTTGCTAGTTACTTCTTGGAACGGGCTATTGACGTATTGA 1963
Query 2176 CACCAGATTACGAGCCATCAGATTTGGATATATTATATGCAGAAGGAGTCACTTCATCCA 2235
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1964 CACCAGACTATGAGCCATCGGATTTGGATATATTATACGCAGAAGGAGTCACTTCGTCCA 2023
Query 2236 GTGGTCTAGCTTGTCTCGATTTCTCATTTCCACAGACTGCATCAGAAGAGAATCTTGATC 2295
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2024 GTGGTCTAGCTTCTCTCGATTTCTCATTTCCACAGACTGCATCCGAAGAGAATCTTGATC 2083
Query 2296 CTTCTGATCACCATGATTCCCTGCTCAGGTACCAGTTAATTAGAGTACCCTCGAGAGGCC 2355
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 2084 CTTCTGATCACCATGATTCCTTGCTCAGGTACCAGTTAATAAGAGTACCCTCCAGAGGCC 2143
Query 2356 TCGGGGAAAACTGCAAGTGGATAGATATGTTTGAAGACGTCGGAATGGTTGTGTTTGTTG 2415
|||| ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||
Sbjct 2144 TCGGTGAAAACTGCAAATGGATAGATATGTTTGAAGACGTTGGGATGGTTGTTTTTGTTG 2203
Query 2416 TTTCCATGAGTGACTACGACCAGGTGTCAGAAGATGGAACCAACAAGATGTTACTCACAA 2475
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2204 TTTCCATGAGTGACTACGACCAGGTTTCAGAAGATGGAACCAACAAGATGTTACTCACCA 2263
Query 2476 AGAAACTCTTTGAAAGCATTATCACTCATCCCATCTTTGAGAACATGGACTTCCTCTTGA 2535
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 2264 AGAAACTCTTTGAAAGCATTATCACTCATCCCATCTTTGAGCACATGGACTTCCTCTTAA 2323
Query 2536 TTCTCAACAAGTACGATCTCTTGGAAGAAAAAGTAGAACGCGTTCCTTTGGCACGCTGCG 2595
| |||||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||
Sbjct 2324 TACTCAACAAGTACGATCTCCTCGAAGAAAAAGTAGAACGCGTTCCTTTGTCACACTGCA 2383
Query 2596 AGTGGTTCCAAGACTTCAATCCCGTGGTCAGTCGTCACCGTGGTTCCAACAACGGTAACC 2655
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2384 AGTGGTTCCAAGACTTCAATCCTGTGGTCAGTCGTCACCGTGGTTCTAACAACGGTAACC 2443
Query 2656 CCACTTTGGGTCAGCTTGCCTTCCACTTCATGGCGGTTAAGTTCAAGCGGTTTTACTCTT 2715
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2444 CCACTTTGGGTCAGCTCGCTTTCCACTTCATGGCGGTTAAGTTCAAGCGGTTTTACTCTT 2503
Query 2716 CCTTGACCGGGAAAAAGCTGTTTGTTTCTTCAAGCAAAAGTTTGGACCCAAACAGTGTTG 2775
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 2504 CCTTGACCGGGAAAAAGCTGTTTGTTTCTTCAAGTAAGAGTTTGGACCCGAACAGTGTTG 2563
Query 2776 ATTCGTCGCTGAAGTTAGCTATGGAGATACTGAAATGGAGTGAGGAGAGAACAAACATCT 2835
|||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2564 ATTCATCGCTCAAGTTAGCTATGGAGGTTCTGAAATGGAGTGAGGAGAGAACAAACATCT 2623
Query 2836 GCATGAGTGAATACTCTATGTATAGCACTGAGCCAAGTTCCTTCTCAAATTGA 2888
|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2624 GCTTGAGTGAATACTCAATGTACAGCACTGAGCCAAGTTCCTTCTCAAATTGA 2676
> Ahg481217 jgi|Araly1|481217|fgenesh2_kg.4__277__AT2G23470.1
Length=1625
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 2926 GTAACAACTTTCTTGTGTATAGATTGCCACGTAGAT 2961
|||||| |||||||||||||||||||||||||||||
Sbjct 1625 GTAACACCTTTCTTGTGTATAGATTGCCACGTAGAT 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115756254555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5