BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23470.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481217 jgi|Araly1|481217|fgenesh2_kg.4__277__AT2G23470.1 2407 0.0
> Ahg481217 jgi|Araly1|481217|fgenesh2_kg.4__277__AT2G23470.1
Length=1625
Score = 2407 bits (1303), Expect = 0.0
Identities = 1499/1595 (94%), Gaps = 7/1595 (0%)
Strand=Plus/Plus
Query 91 CCTAAAACCCTAAGAACTCTGATGCATTCAACGAATCAAAGCTCTCGACTTTTTCAATAC 150
||| |||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||
Sbjct 1 CCTTAAACCCTAAGAACTCTGATGCATTCAGCGAACCCAAGCTCTCGACTTTTTCTATAC 60
Query 151 CCATGTAAATCAACATCAACCCAATATCCAATCTTCATTTTCCCCAAATTTTCGTCAAGA 210
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 61 CCATGTAAATCAACATCAACCCAATATCCAATCTTCAATTTCCCCAAATTTTCTTCAAGA 120
Query 211 AAATTCGTCAAGTCTCTGAGAACTTCCATTGATTACAAGCAAGAAGGAGCTTCAAAAGAA 270
|||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||
Sbjct 121 AAATTCGTCAAGTCTCTGAGAACTTCCATTGATTACGAGCAAGAAGTA---TCGAAAGAA 177
Query 271 GACCTCGTAGTACCCAGTAACGTAGCTCGTCGTCTTCCAATTATAATCAAAAAGTCTGGC 330
|| ||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||
Sbjct 178 GAACTCGTAGTACCCAGTAACGTAACCCGTCGTCTTCCTATCATAATCAAAAAGTCTGGC 237
Query 331 AAAGTTTCTAGGTACTTCATCAAAGGAGATTCCTTGGAGCTGCTATGTGTTGATGAAGAA 390
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 AAAGTTTCTAGGTACTTCATCAAAGGAGATTCCTTGGAGTTGCTATGTGTTGATGAAGAA 297
Query 391 GAAGATGATTCGACGTCGTTTTGCCTTGGCCTCGATGATGGTTTCTGGAAATTGATAAGA 450
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 298 GAAGATGATTCGACGTCGTTTTGCCTTGGCCTCGACGATGGTTTCTGGAAATTGATTAGA 357
Query 451 CTTACTTCTTCAGCTGCAAAAGACTTCTTTTTACCGAAACAAGTCAGTGACAATTATATA 510
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 CTTTCATCTTCAGCTGCAAAAGACTTCTTTTTACCGAAACAAGTCAGTGACAATTACATA 417
Query 511 AGTTATGTCAAATGGAAGTTTTTGCACAGAGTTTTCAGCTCTGCTTTACAAGTTCTTGCC 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGTTATGTCAAATGGAAGTTTTTGCACAGAGTTTTCAGCTCTGCTTTACAAGTTCTTGCC 477
Query 571 ACTCAGGCAATGTTTAGAGCAATAGGAATTGGACAATCTCGGTCACTAGCTTCATCTGCT 630
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 478 ACTCAGGTAATGTTTAGAGCCATAGGAATTGGACAATCTCGGTCACTTGCTTCATCTGCT 537
Query 631 GCTTTTAACTGGATTTTGAAAGATGGACTTGGAAGGTTAAGTAGATGTATATACACTGCT 690
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 538 GCTTTTAATTGGATTTTGAAAGATGGCCTTGGACGGTTAAGTAGATGTATATACACTGCT 597
Query 691 AGTCTTGCTTCTGCTTTTGACACTAATTTGAAGAGAGTTAGGTTCTCGACGTCTGTACTC 750
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 AGTCTTGCTTCTGCTTTTGACACTAATTTGAAGAGAGTTAGGTTTTCGACGTCTGTACTC 657
Query 751 TTCAGTCTAAGCATTGGAGTTGAGTTAATGACTCCAGTATTCCCTCAGTACTTCCTTTTG 810
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTCAGTCTAAGCATTGGAGTGGAGTTAATGACTCCAGTATTCCCTCAGTACTTCCTTTTG 717
Query 811 CTAGCTTCCATCGCTAACATCGCTAAACAGATTAGCCTGTCGTGCTACTTAGCAACCGGT 870
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 CTAGCTTCCATCGCTAACATCGCTAAACAGATTAGTCTGTCGTGCTACTTAGCAACCGGT 777
Query 871 TCAGCTGTACATCGAAGCTTTGCTGTAGCGGATAACCTTGGTGAAGTCTCTGCAAAGGCA 930
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 778 TCAGCTGTACATCGAAGCTTTGCTGTAGCGGATAACCTCGGTGAAGTCTCTGCAAAGGCA 837
Query 931 CAGATTCAAACTGTTTGTTTTGATAACCTTGGTCTCCTACTGGCGGTTCTTCTAAATATG 990
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 CAGATTCAAACCGTGTGTTTTGATAATCTTGGTCTCCTACTGGCGGTTCTTCTAAATATG 897
Query 991 CTATTCCAACACAACCAAAGACTGCAGGCATGTCTACCTTTTGTTCTATATCCGATTTTC 1050
||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 898 CTATTCCAAAACAACCAAAGACTGCAGGCAAGTCTACCTTTTGTTCTATATCCAATTTTC 957
Query 1051 TCCACGTTTGATCTCCTTGGCATTTATCAAGGGCTCAAGCATATCAATCTGCAAACTTTG 1110
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCCACGTTTGATCTCCTTGGCATTTATCAAGGGCTCAAGCATATCAATCTGCAAACTTTA 1017
Query 1111 ACCAAGGATAGGCTTGAAATTATTCTGGAAAGATGGATTGAATTTAGGCAAGTACCTTCC 1170
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1018 ACCAAGGATAGGCTTGAAATAATACTGGAAAGATGGATTGAATTCAGGCAAGTACCTTCC 1077
Query 1171 CCTGCCGAAGTGAGTGAAGAGGAAGGAATTGGCCTTTTAGGGAGTAGAGGTAGCAAACGG 1230
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 1078 CCTGCCGAAGTGAGTGAAGAGGAAGGAATTGACCTTTTAGGGAGCAGAGGTAGCAAAAGG 1137
Query 1231 GTTTGGCCCATCAGAATCGGATGCTTAGATCCTAAGGCCCAGATTCCTACACTATCGATG 1290
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1138 GTTTGGCCCATTAGAATCGGATGCTTAGATCCTAAGGCTCAGATTCCTACACTATCGATG 1197
Query 1291 ATGGCCATGCAATCACTCTGCAGTGATGATGGTTACTTCATAACCATGGAACTTTCCTCC 1350
||||| |||||||||||||||| ||||||| ||| |||||||||||| |||||||||||
Sbjct 1198 ATGGCGATGCAATCACTCTGCAATGATGATAGTTTCTTCATAACCATTGAACTTTCCTCT 1257
Query 1351 CAAGGTTTCAGAAGAATACCAAAATCGGGCATCGTTATTTGTCTGCGCGAAGGAGCCAAC 1410
||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1258 AAAGGTTTTAGAAGAACACCAAAACCGGGCATCGTTATTTGTCTGCGTGAAGGAGCCAAC 1317
Query 1411 AGTGTAGACGTTATCACGAGTTTGTTACAGACATGTTACATACGTAAATCCCTTGGAGCC 1470
||||||||| |||||||||||||||| |||||||||||||||||| || || ||||| ||
Sbjct 1318 AGTGTAGACATTATCACGAGTTTGTTGCAGACATGTTACATACGTGAAGCCTTTGGAACC 1377
Query 1471 AATAGAACCAAGAGAAGCTATTTATCGTTTTCAGACTTGACGCTACAAGATTGGACCTTG 1530
||| ||| ||||||||| | |||| || |||||||||||||||||||||||| ||||
Sbjct 1378 AATCGAATCAAGAGAAGAGACGTATCATTGTCAGACTTGACGCTACAAGATTGGTCCTTA 1437
Query 1531 CTCACTAG-AGAGAGTAAGCGAGCTGCTCGAGATGATAATATCGCACTGAACAAACAAAT 1589
||||| || |||||||||||||||||| |||||||||| |||| ||||||||| |||| |
Sbjct 1438 CTCAC-AGGAGAGAGTAAGCGAGCTGCACGAGATGATATTATCACACTGAACAGACAACT 1496
Query 1590 GCAAGAACAAGGTTGGATCGTAAAGAATGTCTTGTTGAGTGCAGAAGAGCA-GATTAGAT 1648
||||||||| || ||||| || |||||||| |||||| |||||||||| || | ||||||
Sbjct 1497 GCAAGAACATGGATGGATTGTGAAGAATGTTTTGTTGTGTGCAGAAGAACAAG-TTAGAT 1555
Query 1649 ACATTTTTGACAAAAACCAATTGTAACATAAAAGA 1683
| | ||| ||||||| |||||||||||||||||||
Sbjct 1556 ATACTTTCGACAAAACCCAATTGTAACATAAAAGA 1590
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1761 ATCTACGTGGCAATCTATACACAAGAAAGTTGTTAC 1796
||||||||||||||||||||||||||||| ||||||
Sbjct 1590 ATCTACGTGGCAATCTATACACAAGAAAGGTGTTAC 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5