BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23470.1 Length=1797 Score E Sequences producing significant alignments: (Bits) Value Ahg481217 jgi|Araly1|481217|fgenesh2_kg.4__277__AT2G23470.1 2407 0.0 > Ahg481217 jgi|Araly1|481217|fgenesh2_kg.4__277__AT2G23470.1 Length=1625 Score = 2407 bits (1303), Expect = 0.0 Identities = 1499/1595 (94%), Gaps = 7/1595 (0%) Strand=Plus/Plus Query 91 CCTAAAACCCTAAGAACTCTGATGCATTCAACGAATCAAAGCTCTCGACTTTTTCAATAC 150 ||| |||||||||||||||||||||||||| |||| | ||||||||||||||||| |||| Sbjct 1 CCTTAAACCCTAAGAACTCTGATGCATTCAGCGAACCCAAGCTCTCGACTTTTTCTATAC 60 Query 151 CCATGTAAATCAACATCAACCCAATATCCAATCTTCATTTTCCCCAAATTTTCGTCAAGA 210 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 61 CCATGTAAATCAACATCAACCCAATATCCAATCTTCAATTTCCCCAAATTTTCTTCAAGA 120 Query 211 AAATTCGTCAAGTCTCTGAGAACTTCCATTGATTACAAGCAAGAAGGAGCTTCAAAAGAA 270 |||||||||||||||||||||||||||||||||||| ||||||||| | || |||||| Sbjct 121 AAATTCGTCAAGTCTCTGAGAACTTCCATTGATTACGAGCAAGAAGTA---TCGAAAGAA 177 Query 271 GACCTCGTAGTACCCAGTAACGTAGCTCGTCGTCTTCCAATTATAATCAAAAAGTCTGGC 330 || ||||||||||||||||||||| | ||||||||||| || |||||||||||||||||| Sbjct 178 GAACTCGTAGTACCCAGTAACGTAACCCGTCGTCTTCCTATCATAATCAAAAAGTCTGGC 237 Query 331 AAAGTTTCTAGGTACTTCATCAAAGGAGATTCCTTGGAGCTGCTATGTGTTGATGAAGAA 390 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 238 AAAGTTTCTAGGTACTTCATCAAAGGAGATTCCTTGGAGTTGCTATGTGTTGATGAAGAA 297 Query 391 GAAGATGATTCGACGTCGTTTTGCCTTGGCCTCGATGATGGTTTCTGGAAATTGATAAGA 450 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 298 GAAGATGATTCGACGTCGTTTTGCCTTGGCCTCGACGATGGTTTCTGGAAATTGATTAGA 357 Query 451 CTTACTTCTTCAGCTGCAAAAGACTTCTTTTTACCGAAACAAGTCAGTGACAATTATATA 510 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 358 CTTTCATCTTCAGCTGCAAAAGACTTCTTTTTACCGAAACAAGTCAGTGACAATTACATA 417 Query 511 AGTTATGTCAAATGGAAGTTTTTGCACAGAGTTTTCAGCTCTGCTTTACAAGTTCTTGCC 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 AGTTATGTCAAATGGAAGTTTTTGCACAGAGTTTTCAGCTCTGCTTTACAAGTTCTTGCC 477 Query 571 ACTCAGGCAATGTTTAGAGCAATAGGAATTGGACAATCTCGGTCACTAGCTTCATCTGCT 630 ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 478 ACTCAGGTAATGTTTAGAGCCATAGGAATTGGACAATCTCGGTCACTTGCTTCATCTGCT 537 Query 631 GCTTTTAACTGGATTTTGAAAGATGGACTTGGAAGGTTAAGTAGATGTATATACACTGCT 690 |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 538 GCTTTTAATTGGATTTTGAAAGATGGCCTTGGACGGTTAAGTAGATGTATATACACTGCT 597 Query 691 AGTCTTGCTTCTGCTTTTGACACTAATTTGAAGAGAGTTAGGTTCTCGACGTCTGTACTC 750 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 598 AGTCTTGCTTCTGCTTTTGACACTAATTTGAAGAGAGTTAGGTTTTCGACGTCTGTACTC 657 Query 751 TTCAGTCTAAGCATTGGAGTTGAGTTAATGACTCCAGTATTCCCTCAGTACTTCCTTTTG 810 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTCAGTCTAAGCATTGGAGTGGAGTTAATGACTCCAGTATTCCCTCAGTACTTCCTTTTG 717 Query 811 CTAGCTTCCATCGCTAACATCGCTAAACAGATTAGCCTGTCGTGCTACTTAGCAACCGGT 870 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 718 CTAGCTTCCATCGCTAACATCGCTAAACAGATTAGTCTGTCGTGCTACTTAGCAACCGGT 777 Query 871 TCAGCTGTACATCGAAGCTTTGCTGTAGCGGATAACCTTGGTGAAGTCTCTGCAAAGGCA 930 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 778 TCAGCTGTACATCGAAGCTTTGCTGTAGCGGATAACCTCGGTGAAGTCTCTGCAAAGGCA 837 Query 931 CAGATTCAAACTGTTTGTTTTGATAACCTTGGTCTCCTACTGGCGGTTCTTCTAAATATG 990 ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 838 CAGATTCAAACCGTGTGTTTTGATAATCTTGGTCTCCTACTGGCGGTTCTTCTAAATATG 897 Query 991 CTATTCCAACACAACCAAAGACTGCAGGCATGTCTACCTTTTGTTCTATATCCGATTTTC 1050 ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 898 CTATTCCAAAACAACCAAAGACTGCAGGCAAGTCTACCTTTTGTTCTATATCCAATTTTC 957 Query 1051 TCCACGTTTGATCTCCTTGGCATTTATCAAGGGCTCAAGCATATCAATCTGCAAACTTTG 1110 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TCCACGTTTGATCTCCTTGGCATTTATCAAGGGCTCAAGCATATCAATCTGCAAACTTTA 1017 Query 1111 ACCAAGGATAGGCTTGAAATTATTCTGGAAAGATGGATTGAATTTAGGCAAGTACCTTCC 1170 |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 1018 ACCAAGGATAGGCTTGAAATAATACTGGAAAGATGGATTGAATTCAGGCAAGTACCTTCC 1077 Query 1171 CCTGCCGAAGTGAGTGAAGAGGAAGGAATTGGCCTTTTAGGGAGTAGAGGTAGCAAACGG 1230 ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || Sbjct 1078 CCTGCCGAAGTGAGTGAAGAGGAAGGAATTGACCTTTTAGGGAGCAGAGGTAGCAAAAGG 1137 Query 1231 GTTTGGCCCATCAGAATCGGATGCTTAGATCCTAAGGCCCAGATTCCTACACTATCGATG 1290 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1138 GTTTGGCCCATTAGAATCGGATGCTTAGATCCTAAGGCTCAGATTCCTACACTATCGATG 1197 Query 1291 ATGGCCATGCAATCACTCTGCAGTGATGATGGTTACTTCATAACCATGGAACTTTCCTCC 1350 ||||| |||||||||||||||| ||||||| ||| |||||||||||| ||||||||||| Sbjct 1198 ATGGCGATGCAATCACTCTGCAATGATGATAGTTTCTTCATAACCATTGAACTTTCCTCT 1257 Query 1351 CAAGGTTTCAGAAGAATACCAAAATCGGGCATCGTTATTTGTCTGCGCGAAGGAGCCAAC 1410 ||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1258 AAAGGTTTTAGAAGAACACCAAAACCGGGCATCGTTATTTGTCTGCGTGAAGGAGCCAAC 1317 Query 1411 AGTGTAGACGTTATCACGAGTTTGTTACAGACATGTTACATACGTAAATCCCTTGGAGCC 1470 ||||||||| |||||||||||||||| |||||||||||||||||| || || ||||| || Sbjct 1318 AGTGTAGACATTATCACGAGTTTGTTGCAGACATGTTACATACGTGAAGCCTTTGGAACC 1377 Query 1471 AATAGAACCAAGAGAAGCTATTTATCGTTTTCAGACTTGACGCTACAAGATTGGACCTTG 1530 ||| ||| ||||||||| | |||| || |||||||||||||||||||||||| |||| Sbjct 1378 AATCGAATCAAGAGAAGAGACGTATCATTGTCAGACTTGACGCTACAAGATTGGTCCTTA 1437 Query 1531 CTCACTAG-AGAGAGTAAGCGAGCTGCTCGAGATGATAATATCGCACTGAACAAACAAAT 1589 ||||| || |||||||||||||||||| |||||||||| |||| ||||||||| |||| | Sbjct 1438 CTCAC-AGGAGAGAGTAAGCGAGCTGCACGAGATGATATTATCACACTGAACAGACAACT 1496 Query 1590 GCAAGAACAAGGTTGGATCGTAAAGAATGTCTTGTTGAGTGCAGAAGAGCA-GATTAGAT 1648 ||||||||| || ||||| || |||||||| |||||| |||||||||| || | |||||| Sbjct 1497 GCAAGAACATGGATGGATTGTGAAGAATGTTTTGTTGTGTGCAGAAGAACAAG-TTAGAT 1555 Query 1649 ACATTTTTGACAAAAACCAATTGTAACATAAAAGA 1683 | | ||| ||||||| ||||||||||||||||||| Sbjct 1556 ATACTTTCGACAAAACCCAATTGTAACATAAAAGA 1590 Score = 62.1 bits (33), Expect = 1e-08 Identities = 35/36 (97%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1761 ATCTACGTGGCAATCTATACACAAGAAAGTTGTTAC 1796 ||||||||||||||||||||||||||||| |||||| Sbjct 1590 ATCTACGTGGCAATCTATACACAAGAAAGGTGTTAC 1625 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67457823895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5