BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23510.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320171 jgi|Araly1|320171|fgenesh1_pm.C_scaffold_4000228 2061 0.0
> Ahg320171 jgi|Araly1|320171|fgenesh1_pm.C_scaffold_4000228
Length=1356
Score = 2061 bits (1116), Expect = 0.0
Identities = 1282/1362 (94%), Gaps = 12/1362 (1%)
Strand=Plus/Plus
Query 1 ATGCCGATTCACATAGGTTCATCGATCCCTTTAATGGTCGAGAAGATGCTCACCGAAATG 60
||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1 ATGTCGATTCACATAGCTTCATCGATCCCTTTAATGGTCGAGAAGAAGCTCACCGATATG 60
Query 61 GTAAAACCCTCAAAACATATTCCTCAACAAACTCTTAACCTTTCAACACTTGACAATGAT 120
|| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 61 GTGAAACCCTCAAAACATATTCCTCAACAAACACTTTCCCTTTCAACACTTGACAATGAT 120
Query 121 CCTTACAACGAAGTTATTTACAAGGCATGTTACGTTTTCAAAGCCAAGAACGTTGCTGAT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 121 CCTTACAACGAAGTTATTTACAAGGCATGTTACGTTTTCAAATCCAAGAACGTTGTTGAT 180
Query 181 GATGATAACCGGCCTGAAGC-TTTGCTTAGGGAGGCTTTATCCGATCTTCTTGGGTATTA 239
|||||||||||||||||| | ||||||||||||||| || ||||||||||||| ||||||
Sbjct 181 GATGATAACCGGCCTGAA-CTTTTGCTTAGGGAGGCCTTGTCCGATCTTCTTGTGTATTA 239
Query 240 CTATCCGCTTTCGGGGAGTTTGAAGCGGCAGGAAAGTGACCGGAAGCTTCAGTTGAGTTG 299
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 240 CTATCCGCTTTCGGGGAGTTTGAAGCGGCAGGAGAGTGACCGGAAGCTTCAATTGAGCTG 299
Query 300 TGGCGGTGATGGAGGTGGTGTGCCGTTCACGGTAGCTACTGCAAATGTCGAGCTCTCTTC 359
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TGGCCACGATGGAGGCGGTGTGCCGTTCACGGTAGCTACTGCAAATGTGGAGCTCTCTTC 359
Query 360 TTTGAAGAATCTAGAGAATATTGACTCGGATACGGCCTTGAAT-TTTTTGCCTGTACTTC 418
||||||||||| |||||||||||||||||||||||||||| || || ||||||| |||||
Sbjct 360 TTTGAAGAATCAAGAGAATATTGACTCGGATACGGCCTTG-ATGTTCTTGCCTGAACTTC 418
Query 419 ACGTGGATATTGATGGTTATCGACCTTTTGCTTTGCAGGTAACCAAATTTGAATGTGGAG 478
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGTGGATAACGATGGTTATCGACCTTTTGCTTTGCAGGTAACCAAATTTGAATGTGGAG 478
Query 479 GATTTATCTTAGGGAT-GGCAATGTCACATGCAATGTGCGATGGATATGGAGAAGGTCAT 537
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATTTATCTTAGGGATAGG-AATGTCACATGCAATGTGCGATGGATATGGAGAAGGTCAT 537
Query 538 ATCATGTGTGCCTTGACGGATTTGGCTGGCGGGAAGAAGAAGCCGATGGTGACACCGATT 597
|||||||||||||||||||| ||||| |||||||||||| |||||||| || ||| ||
Sbjct 538 ATCATGTGTGCCTTGACGGAGTTGGCCAACGGGAAGAAGAAACCGATGGTAACTCCGGTT 597
Query 598 TGGGAAAGAGAAAGACTCGTGGGGAAGCCGGAAGATGATCAACCTCCATTTGTTCCCGGC 657
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TGGGAAAGAGAAAGACTTGTGGGGAAGCCTGAAGATGATCAACCTCCATTTGTTCCCGGC 657
Query 658 GACGACACAGCTGCTTCGCCTTACTTACCAACGGATGATTGGGTAACTGAAAAAATAACT 717
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 658 GACGACACGGCTGCTTCGCCCTACTTACCAACGGATGATTGGGTAACTGAAAAAATAAAT 717
Query 718 ATTAGAGCCGATAGCATAAGAAGATTGAAAGAAGCTACATTGAAAGAGTACGACTTCTCT 777
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 ATTAGAGCCGATAGCATAAGAAGATTGAAAGAAGCTACATTGAAAGAGTGCGACTTCTCT 777
Query 778 AATGAGACAATCACAACTTTCGAAGTTATAGGAGCTTATTTGTGGAAGTCAAGAGTTAAA 837
|||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 778 AATGAGACAATCACTACTTTCGAAGTTCTAGGAGCTTATTTGTGGAAATCAAGAGTTAAA 837
Query 838 GCTCTTAATTTGGATCGAGATGGAGTCACTGTTTTGGGTTTATCAGTAGGAATCCGCAAC 897
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 GCTCTCAATTTGGATCGAGATGGAGTCACAGTTTTGGGTTTATCAGTAGGAATCCGCAAC 897
Query 898 GTTGTGGATCCACCTTTGCCTGATGGATACTATGGCAATGCATATATTGATATGTATGTG 957
||||||||||||||| |||| ||||||||||| || |||||||||||||| |||||||||
Sbjct 898 GTTGTGGATCCACCTCTGCCCGATGGATACTACGGTAATGCATATATTGACATGTATGTG 957
Query 958 CCATTAACCGCAAGAGAAGTGGAAGAGTTTACGATCTCAGATATCGTAAAGCTCATAAAA 1017
||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 958 CCATTAACCGCGAGAGAAGTGGAAGAATTTACGATCTCCGATATCGTAAAGCTTATAAAA 1017
Query 1018 GAAGCGAAGAGGAATGCTCACGATAAAGATTATCTCCAAGAAGAGCTTGCAAACACTGAA 1077
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAAGCAAAGAGGAAGGGTCACGATAAAGATTATCTCCAAGAAGAGCTTGCAAACACTGAA 1077
Query 1078 AAAATCATTAAGATGAACTTAACGATCAAAGGaaaaaaaGATGGGTTGTTTTGTTTGACT 1137
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAAATCATTAAGATGAATTTAAAGATCAAAGGAAAAAAAGATGGGTTGTTTTGTTTGACG 1137
Query 1138 GATTGGAGGAATATTGGGAT-TTTCGGATCGATGGATTTCGGGTGGGATGAGCCGGTGAA 1196
|||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||
Sbjct 1138 GATTGGAGGAATATCGGGATCTTT-GGATCGATGGATTTCGGGTGGAATGAGCCGGTGAA 1196
Query 1197 TATCGTACCCG-TGGTTCCATCGGAGACAGCTAGGACGGTTAATATGTTCATGCGACCAT 1255
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TATCGT-CCCGGTGGTTCCATCGGAGACAGCTAGGACGGTTAATATGTTCATGCGACCAT 1255
Query 1256 CTAGGCTGGAATCGGATATGGTCGGAGGGGTTCAAATAGTGGTTACATTGCCAAGAATTG 1315
||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1256 CTAGGTTGGAACCGGATATGGTCGGAGGGGTTCAGATTGTGGTTACATTGCCAAGAATTG 1315
Query 1316 CAATGGTTAAGTTCAAGGAAGAGATGGAAGCTTTAG-AGTAA 1356
||||| |||||||||||||||||||| ||||||| | |||||
Sbjct 1316 CAATGCTTAAGTTCAAGGAAGAGATGAAAGCTTT-GCAGTAA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5