BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23520.1
Length=2953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481220 jgi|Araly1|481220|fgenesh2_kg.4__280__AT2G23520.1 4793 0.0
Ahg944166 jgi|Araly1|944166|scaffold_700395.1 1906 0.0
> Ahg481220 jgi|Araly1|481220|fgenesh2_kg.4__280__AT2G23520.1
Length=2909
Score = 4793 bits (2595), Expect = 0.0
Identities = 2808/2912 (96%), Gaps = 9/2912 (0%)
Strand=Plus/Plus
Query 1 ATGCATTTTCCTTTGTGGAAGCAAATTCATCACTGTGCTACTCTGATCTTAGATAAGAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCATTTTCCTTTGTGGAAGCAAATTCATCACTGTGCTACTCTGATCTTAGATAAGAGT 60
Query 61 AAGAGTAGGAGAAGAGATGGTTCTGATTCACCAATCGATGTTAGAAGGAAAGCTTCAATG 120
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 AAGAGTAGGAGAAGAGATGGTTCTGATTCACCAATTGATGTTAGAAGAAAAGCTTCAATG 120
Query 121 CTTAGGAAATTGTATGAAGATAAGCTTAGAGATGCTCTTGAAGAAGCTTCTGAGAATGGG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CTTAGGAAATTGTATGAAGATAAGCTTAGAGATGCTCTTGAAGAAGCATCTGAGAATGGG 180
Query 181 TCACTCTTTAAATCTCAAGACGTTGAGAATGAGAATCAAGATGAGAGCTTAGGTCGTTCT 240
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TTGCTCTTTAAATCTCAAGAAGTTGAGAAAGAGAATCAAGATGAGAGCTTAGGTCGTTCT 240
Query 241 AGATCTTTGGCTAGGTTACACGCTCAACGTGAGTTCTTACGTGCTACTGCTTTAGCTGCA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATCTTTGGCTAGGTTACACGCTCAACGTGAGTTCTTACGTGCTACTGCTTTAGCTGCT 300
Query 301 GAACGTGCTTTTGAGTCTGAAGATGATATACCTGAGCTTCTTGAAGCTTTTAATAAGTTT 360
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GAACGCACTTTTGAGTCTGAAGATGACATACCTGAGCTTCTTGAAGCTTTTAATAAGTTT 360
Query 361 CTTACAATGTATCCAAAGTTTGAGACTTCTGAGAAAGTTGATCAATTGAGATCTGATGAG 420
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CTTATTATGTATCCAAAGTTTGAGACTTCTGAGAAAGTTGATCAGTTGAGATCTGATGAG 420
Query 421 TATGGTCACTTGTTGGATTCAAAGGTATGTCTTGATTACTGTGGATTTGGG-TTGTTTTC 479
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 421 TATGGTCACTTGTTGGATTCAAAGGTATGTCTTGATTACTGTGGCTTTGGGCTT-TTTTC 479
Query 480 TTATGTTCAGACTTTGCATTATTGGGATTCTTGTACGTTTAGTTTATCTGAGATTACTGC 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTATGTTCAGACTTTGCATTATTGGGATTCTTGTACGTTTAGTTTATCTGAGATTACTGC 539
Query 540 TAATTTGAGTAACCATGCGCTTTATGGTGGAGCTGAGATTGGAACTGTGGAACATGATCT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAATTTGAGTAACCATGCGCTTTATGGTGGAGCTGAGATTGGAACTGTGGAACATGATCT 599
Query 600 CAAGACTAGGATAATGGATTATCTGAATATACCTGAGAGTGAGTATGGTCTTGTTTTTAC 659
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 600 TAAGACTAGGATAATGGATTATCTTAATATACCTGAGAGTGAGTATGGTCTTGTTTTCAC 659
Query 660 TGGAAGTAGAGGCTCTGCGTTTAGGTTGCTTGCGGAATCTTATCCTTTTCATACGAATAA 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGAAGTAGAGGCTCGGCGTTTAGGTTGCTTGCGGAATCTTATCCTTTTCATACGAATAA 719
Query 720 GCGGCTTTTGACAATGTTTGATCATGAGAGTCAGTCTGTGAATTGGATGGCTCAGACTGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCGGCTTTTGACAATGTTTGATCATGAGAGTCAGTCTGTGAATTGGATGGCTCAGACTGC 779
Query 780 AAGAGAGAAAGGTGCTAAAGCTTATAACGCTTGGTTTAAATGGCCAACTTTGAAGCTGTG 839
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGAGAGAAAGGTGCGAAAGCTTATAACGCTTGGTTTAAATGGCCAACTTTGAAGCTGTG 839
Query 840 TTCGACGGATTTGAAGAAGCGTTTGTCTCATAAGAAGAGGAAGAAGAAGGATTCTGCGGT 899
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCCACGGATTTGAAGAAGCGTTTGTCTCATAAGAAGAGGAAGAAGAAGGATTCTGCGGT 899
Query 900 TGGGTTGTTTGTGTTTCCTGCTCAGTCTAGAGTTACAGGTTCTAAGTACTCTTACCAGTG 959
||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 900 TGGTTTGTTTGTGTTTCCTGCGCAGTCTAGGGTTACGGGTTCTAAGTACTCTTACCAGTG 959
Query 960 GATGGCTCTTGCTCAGCAGAACAACTGGCATGTGTTGCTTGATGCTGGTTCTTTAGGTCC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATGGCTCTTGCTCAGCAGAACAACTGGCATGTGTTGCTTGATGCTGGTTCTTTAGGTCC 1019
Query 1020 CAAAGATATGGATTCGCTCGGGTTATCATTGTTTCGACCAGAGTTTATCATCACCTCGTT 1079
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 CAAAGATATGGATTCGCTCGGTTTATCGTTGTTTCGACCAGAGTTTATCATCACCTCGTT 1079
Query 1080 CTACAAGGTCTTTGGGCATGATCCTACAGGTTTTGGTTGCCTGTTGATTAAGAAGTCGGT 1139
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 CTACAAGGTCTTTGGGCATGATCCTACAGGTTTTGGTTGTCTGTTGATTAAGAAGTCGGT 1139
Query 1140 GATGGGTAATCTTCAGAGTCAGTCCGGGAAAACAGGATCAGGAATTGTGAAGATCACACC 1199
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 GATGGGTAATCTTCAGAGTCAGTCCGGGAAAACAGGATCGGGAATTGTGAAGATCACACC 1199
Query 1200 TCAGTATCCGTTATATCTCAGTGATTCGATAGATGGTCTTGACGGATTGGTTGGTCTTGA 1259
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 TCAATATCCATTATATCTCAGTGATTCGATAGATGGTCTGGACGGATTGGTTGGTCTTGA 1259
Query 1260 AGATCATGACATTGGTACAAATGGTGATAAACCGGCTACGACAGATGCTGCTCGTAGAGG 1319
|||||||||| |||||||||||||||||||||| || || ||||| |||||| |||||||
Sbjct 1260 AGATCATGACGTTGGTACAAATGGTGATAAACCAGCCACCACAGAGGCTGCTAGTAGAGG 1319
Query 1320 CGCTCAGATGCCGGTATTCTCTGGTGCATACACTTCAGCTCAAGTGAGGGATGTGTTTGA 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGCTCAGATGCCGGTATTCTCTGGTGCATACACTTCAGCTCAAGTGAGGGATGTGTTTGA 1379
Query 1380 GACAGATCTCTTAGAAGATAATGCCTCTGATAGAGATGGGACTAGTAGTACCATATTTGA 1439
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GACAGACCTCTTAGAAGATAATGCCTCTGATAGAGATGGGACTAGTAGTACCATATTTGA 1439
Query 1440 AGAAAATGAAAGTGTTTCGGTTGGAGAATTGATGAAAAGTCCAGCTTTCAGTGAAGATGA 1499
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1440 AGAAAATGAAAGTGTTTCGGTTGGAGAACTGATGAAAAGCCCAGCTTTCAGTGAAGATGA 1499
Query 1500 GTCATCCGATAATTCGTTTTGGATCGATTTGGGTCAAAGTCCGCTCGGGTCTGACAGTGC 1559
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1500 GTCATCTGATAATTCCTTTTGGATCGATTTGGGTCAAAGTCCGCTTGGGTCTGACCGTGC 1559
Query 1560 GGGTCACTTGAACCACCATAAAATCGCCTCTCCATTGCCACCGTTTTGGTTTACCAGCAA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGGTCACTTGAACCACCATAAAATCGCCTCTCCATTGCCACCGTTTTGGTTTACCAGCAA 1619
Query 1620 AAGGCAATCACCAAAACCGGTGGCAAAGAGTTACAGCAGTCCTATGTATGATGGTAAAGA 1679
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 ACGGCAATCACCAAAACCGGTAGCAAAGAGTTACAGCAGTCCTATGTATGATGGTAAAGA 1679
Query 1680 TGTCCTCTCGTTTGATGCTGCAGTAATGTCAGTTACTCAGGAGATAAACTCTACGCCATC 1739
|||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 1680 TGTCCTCTCGTTTGATGCTGCAGTTATGTCAGTTACTCAGGAGACAAACTCAACGCCATC 1739
Query 1740 ACGGAATCTGAGGAACTCTAATAATCTCCAAATTCAAGAGATACAGGAAGAAAACTGCGG 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ACGGAATCTGAGGAACTCTAATAATCTCCAAATTCAAGAGATACAGGAAGAAAACTGCGG 1799
Query 1800 TAATATTGTGTATCGTGCAGGATCTGGTTTTGGATCAAATGGCTCAAGCTCCAAGATTTC 1859
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TAACATTGTGTATCGCGCAGGATCTGGTTTTGGATCAAATGGCTCAAGCTCCAAGATTTC 1859
Query 1860 TTCAGATATGAAAGATAACGCAATTAGACGAGAAACAGAAGGTGAGTTTAGGTTATTGGG 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TTCAGATATGAAAGATAACGCAATTAGACGAGAAACAGAAGGTGAGTTTAGGTTATTGGG 1919
Query 1920 AAGAAGGGGTACTGGTGGGAGGCTTTTGGGTTTGGAAGATGAACAACCAAGCAGAGGAAC 1979
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1920 AAGAAGGGGTACTGGTGGGAGGCTTTTGGGTGTGGAAGATGAACAACCAAGCAGAGGAAC 1979
Query 1980 AAGGGTTTCATTTAACATGGACCGTGTCAGTCATAGTCTGGACCAAGGTGAAGCTTCTCT 2039
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1980 ACGGGTTTCATTTAACATTGACCGTGTCAGTCATAGTCTGGACCAAGGTGAAGCTTCTAT 2039
Query 2040 GGCCAGTGTATATGACGAAAGTGATGGTGAAAACCCGAATGAGGATGATTGGGACAGAAG 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 GGCCAGTGTATATGACGAAAGTGATGGTGAAAACCCGAATGAGGATGATTGGGACAGAAG 2099
Query 2100 GGAGCCCGAGATTGTTTGCAGCCATATCGATCATGTGAATATGTTAGGTCTTAATAAAAC 2159
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2100 GGAGCCCGAGATTGTTTGCAGCCATATTGATCATGTGAATATGTTAGGTCTTAATAAAAC 2159
Query 2160 CACAAGTAGGCTCAGATTTCTGATTAACTGGCTAGTGATCTCTTTGCTACAGCTTAAAGT 2219
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2160 CACAAGTAGGCTCAGATTTCTGATTAACTGGCTTGTGATCTCTTTGCTACAGCTGAAAGT 2219
Query 2220 GCCTGAACCAGGCAGTGACGGTAGTAGCAGATACATGAATCTTGTGCAGATTTATGGCCC 2279
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2220 GCCTGAACCAGGCAGTGACGGTAGCAGCAGATATATGAATCTTGTGCAGATTTATGGCCC 2279
Query 2280 AAAGATAAAGTACGAAAGAGGAGCGGCAGTTGCTTTCAACGTGAAAGACAAAAGCAAAGG 2339
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2280 AAAGATAAAGTACGAAAGAGGAGCAGCGGTTGCTTTCAACGTGAAAGACAAAAGCAAAGG 2339
Query 2340 ATTTGTAAGTCCAGAAATTGTTCTGAAACTGGCTGAGAGAGAAGGTGTATCTCTTGGTAT 2399
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 GTTTGTAAGTCCAGAAGTTGTTCTGAAACTGGCTGAGAGAGAAGGTGTATCTCTTGGTAT 2399
Query 2400 TGGAATATTGAGTCACATACGCATAATGGATCTTCCGAGAAACCACCGTGGAGGCGCTAG 2459
||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2400 TGGTATCTTGAGTCACATACGCATAATGGATCTTCCGAGAAACCACCGCGGGGGCGCTAG 2459
Query 2460 GATCAAGGAAGATAGTTCTTTGCATCTGCAGAGAGAAGCTGGTAAACGTGGTGGTAAAAA 2519
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 2460 GATCAAGGAAGATAGTTCTTTGCATCTGCAGAGAGAAGCTGGTAAGCGCGGTGGAAAAAA 2519
Query 2520 TGGGTTCGTGCGATTTGAGGTTGTCACAGCTTCTCTAAGCTTTTTGTCGAACTTTGAGGA 2579
|||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 2520 TGGGTTTGTGCGATTTGAGGTTGTCACAGCTTCTCTCAGCTTTTTGACAAACTTTGAGGA 2579
Query 2580 TGTTTATAAGCTATGGGCTTTTGTAGCCAAGTTCCTAAACCCCGGTTTCAGCAGAGAAGG 2639
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||
Sbjct 2580 TGTTTATAAGCTATGGGCTTTTGTCGCCAAGTTCTTAAACCCCGGTTTCAGCAGGGAAGG 2639
Query 2640 ATCACTACCGACTGTAATAGAAGAAGAAGCAGAAGATTCAGAGACGTGATTGATTCTTTG 2699
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2640 ATCGCTCCCGACTGTAATTGAAGAAGAAGCAGAAGATTCAGAGACGTGATTGATTCTTTG 2699
Query 2700 AAAACTTTTTGAAACAGGACT-CAAAAGGCTTGAGCCACTAACA---TCCTAGAGGCTTC 2755
|||||||||||||||| | || |||| | ||||||||||||||| |||||||||||||
Sbjct 2700 AAAACTTTTTGAAACACG-CTGCAAATGCCTTGAGCCACTAACAACATCCTAGAGGCTTC 2758
Query 2756 TGGAAATGGAAGGAGGGTAAAAAGTAAAACTGTGAATTAAGATTTGCTATATATAGTTTT 2815
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2759 TGGAAATGGAAGGAGGGTAAAAAGTAAAACTGTGAATTAAGATTTGCTAAATATAGTTTT 2818
Query 2816 TT-CGTTTTGGCTCTGTTTCAGTTTTTAGGAATATGAGATAGGAGGAGAATTCTTGTAAA 2874
|| ||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2819 TTTCGTATTG-CTCTGTTTCAGTTTTTAGGAATATGAGATAGGAGGACAATTCTTGGAAA 2877
Query 2875 CTGGAAAACAGAACATGTTTTGGCCAAAGATT 2906
||||||| |||||||||||||||||||| |||
Sbjct 2878 CTGGAAAGCAGAACATGTTTTGGCCAAATATT 2909
> Ahg944166 jgi|Araly1|944166|scaffold_700395.1
Length=2732
Score = 1906 bits (1032), Expect = 0.0
Identities = 2259/2811 (80%), Gaps = 246/2811 (9%)
Strand=Plus/Plus
Query 1 ATGCATTTTC-CTTTGTGGAAGCAAATTCATCACTGTGCTACTCTGATCTTAGATAAGAG 59
||||| |||| || |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 25 ATGCA-TTTCTCTCTGTGGAAGCAAATTCATCACTGTGCTTCTCTGATCTTAGACAAGAG 83
Query 60 T---A--AGAGTAGG-AGAAG-A--GATGGTTCTGATTCACCAATCGATGT-TAGAAGGA 109
| | |||| ||| ||||| | ||||| |||||||| | || |||| |||| |
Sbjct 84 TAAGAGCAGAGGAGGAAGAAGAAGGGATGGCTCTGATTCGTCTCTCAATGTCAAGAA-AA 142
Query 110 AAGCTTCAATGCTTAGGAAATTGTATGAAGATAAGCTTAGAGATGCTCTT-GAAGAAGCT 168
||||| || || || ||||| | |||||||||||||| || || ||| || |||||||||
Sbjct 143 AAGCTGCATTGATTCGGAAACTCTATGAAGATAAGCTCAGGGAAGCT-TTAGAAGAAGCT 201
Query 169 TCTGAGAATGGGTCACTCTTTAAATCTCAAGACGTTGA-GAATGAGAATCAAGAT-GAGA 226
||||| |||||||||||||| ||||| |||||| |||| || || ||| ||| || |
Sbjct 202 TCTGAAAATGGGTCACTCTTCAAATCCCAAGACATTGACCAA-GATAATGGTGATGGA-A 259
Query 227 GCTTAGGTCGTTCTAGATCTTTGGCTAG-GTTACACGCTCAACGTGAG-TTCTTACGTGC 284
|||| |||||||| ||||| || ||||| || ||||| || |||||| ||| |||| ||
Sbjct 260 GCTTGGGTCGTTCCAGATCCTTAGCTAGACTT-CACGCGCAGCGTGAGTTTC-TACGCGC 317
Query 285 TACTGCTTTAGCTGCAGAACGTGCTT-TTGAGTCTGAAGA-TGATATACCTGAGCTTCTT 342
||||||||||| || |||||| || | || || ||||| | ||| |||||||| | |
Sbjct 318 CACTGCTTTAGCAGCTGAACGT-ATTATCGAATCAGAAGACT-CTATTCCTGAGCTCCGT 375
Query 343 GAAGCTTTTAATAAGTTTCTTAC-AATGTATCCAAAGT-TTGAGACTTCTGAGAAAG-TT 399
|||||||| | |||||| ||| | |||||||||||||| || |||||||| ||| ||
Sbjct 376 GAAGCTTTGACTAAGTTCCTT-CGAATGTATCCAAAGTACCAAG-CTTCTGAG-AAGATT 432
Query 400 GATCAATTGAGATCTGATGAGTATGGTCAC-T-T-GT--T-GGATTCAAAGGTATGTCTT 453
||||| || |||||| |||||||| ||||| | | | | | ||||||||||||||||
Sbjct 433 GATCAGTTAAGATCTAATGAGTATAGTCACTTATCATCATCAGCTTCAAAGGTATGTCTT 492
Query 454 GATTACTGTGGATTTGGGT-TGTTTTCTTATGTTCAGACTTTGCATTATTGGGATTCTTG 512
||||||||||||||| ||| | || ||||||||||||||| |||| ||||||||| ||||
Sbjct 493 GATTACTGTGGATTT-GGTCTCTTCTCTTATGTTCAGACTCTGCACTATTGGGATACTTG 551
Query 513 TACGTTTAGTTTATCTGAGATTACTGCTAATTTGAGTAACCATGCGCTTTATGGTGGAGC 572
||| |||||| | |||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 552 TACCTTTAGTCTCTCTGAGATTACTGCCAATTTGAGTAACCACGCGCTTTACGGTGGAGC 611
Query 573 TGAGATTGGAACTGTGGAACATGATCTCAAGACTAGGATAATGGATTATCTGAATATACC 632
||||| ||||||||||||||||||| |||| |||||||| ||||| ||| |||| || ||
Sbjct 612 TGAGAGTGGAACTGTGGAACATGATATCAAAACTAGGATCATGGACTATTTGAACATCCC 671
Query 633 TGAGAGTGAGTATGGTCTTGTTTTTACTG-GAAGTAGAGGCTCTGCGTTT-AGGTTGCTT 690
||||| |||||||||||||||||| || | | |||||||||||||| ||| || ||| ||
Sbjct 672 TGAGAATGAGTATGGTCTTGTTTTCACAGTG-AGTAGAGGCTCTGC-TTTCAGATTG-TT 728
Query 691 -GCGGAATCTTATCCTTTTCA-TACGAATAAGCGGCTTTTGACAATGTTTGATCATGAGA 748
|||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||
Sbjct 729 AGCGGAATCTTATCCTTTTCAGT-CGAATAAGCGGCTTTTGACAATGTTCGATCACGAGA 787
Query 749 GTCAGTCTGTGAATTGGATGGCTCAGACTGCAAGAGAGAAAGGTGCTAAA-GCTTATAAC 807
| |||||||||||||||||||| ||||| || || |||||||| || ||| |||||||||
Sbjct 788 GCCAGTCTGTGAATTGGATGGCGCAGACAGCGAGGGAGAAAGGCGC-AAAGGCTTATAAC 846
Query 808 GCTTGGTTTAAATGGCCAACTTTGAAGCTGTGTTCGACGGATTTGAAGAAGCGTTTGTCT 867
||||||||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||
Sbjct 847 GCTTGGTTTAAATGGCCAACTTTGAAGCTTTGTTCGACTGATTTAAAGAAACGGTTGTCT 906
Query 868 CATAAGAAGAGGAAGAAGAAGGATTCTGCGGTTGGGTTGTTTGTGTTTCCTGCTCAGTCT 927
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 907 TATAAGAAGAGGAAGAAGAAGGATTCCGCGGTTGGGCTGTTTGTGTTTCCTGCTCAGTCT 966
Query 928 AGAGTTACAGGTTCTAAGTACTCTTACCAGTGGATGGCTCTT-GCTCAGCAGAACAACTG 986
| ||||| ||| ||||||| ||||| |||||||||||| || |||||||||||| | ||
Sbjct 967 CGTGTTACGGGTACTAAGTATTCTTATCAGTGGATGGCT-TTAGCTCAGCAGAACCATTG 1025
Query 987 GCATGTGTTGCTTGATGCTGGTTCTTTAGGTCCCAAAGATATGGATTCGCTCGGGTTATC 1046
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1026 GCATGTGTTGCTTGATGCTGGTTCTTTAGGTCCCAAAGATATGGATTCGCTCGGTTTGTC 1085
Query 1047 ATTGTTTCGACCAGAGTTTATCATCACCTCGTTCTACAAG-GTCTTTGGGCATGATCCTA 1105
|||||| || || ||||||||||| |||||||||||| | || ||||||||||| || |
Sbjct 1086 ATTGTTCCGGCCTGAGTTTATCATTACCTCGTTCTACC-GTGTATTTGGGCATGACCCGA 1144
Query 1106 CAGGTTTTGGTTGCCTGTTGATTAAGAAGTCGGTGATGGGTAATC-TTCAGAGTCAGTCC 1164
| || |||||||||||||||||||| || || || ||||| || | |||||||||| ||
Sbjct 1145 CGGGATTTGGTTGCCTGTTGATTAAAAAATCAGTTATGGG-AAGCCTTCAGAGTCAATCT 1203
Query 1165 GGGAAAACAGGATCAGGAATTGTGAAGATCACACCTCAGTATCCGTTATATCTCAGTGAT 1224
||||||||||||||||| || ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1204 GGGAAAACAGGATCAGGTATAGTGAAGATCACGCCTCAATATCCGTTATATCTTAGTGAT 1263
Query 1225 TC-GATAGATGGTCTTGACGGATTGGTTGGTCTTGAAGATCATGACATTGGTACAAATGG 1283
|| | |||||||||||||||||||||||||| |||||||||| | || | | | |
Sbjct 1264 TCAG-TAGATGGTCTTGACGGATTGGTTGGTTTTGAAGATCAC-A-AT-G--A-A---G- 1312
Query 1284 TGATAAACCGGCTACGACAGATGCTGC-TCGTAGAGGCGCTCAGATGCCGG-TATTCTCT 1341
||||| | | | | ||| ||| | |||| ||| |||||||||| | | |||||
Sbjct 1313 --ATAAAGC--C-A--A-AGAAGCT-CATCGTCCAGGAACTCAGATGCCAGCT-TTCTCA 1362
Query 1342 GGTGCATACACTTCAGCTCAAGTGAGGGATGTGTTTGAGACAGATCTCTTAGAAGATAA- 1400
||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1363 GGTGCATACACTTCAGCACAAGTGAGGGATGTGTTTGAAACAGAGCTCCTAGAAGATAAC 1422
Query 1401 -TGCCT-CTGATAGAGATGGGACTAGTAGTACCATA-TTT--GAAGAAAATGAAAGTGTT 1455
| || ||||||||||||| |||| ||| |||| | ||| ||||||| |||||||||
Sbjct 1423 ATATCTTCTGATAGAGATGGAACTACTAGCACCACAATTTTTGAAGAAACGGAAAGTGTT 1482
Query 1456 TCGGTTGGAGAATTGATGAAAAGTCCAGCTTTCAGTGAAGATGAGTCATCCGATAATTCG 1515
||||||||||||||||||||||| || | ||| || |||||||||||||| || ||||||
Sbjct 1483 TCGGTTGGAGAATTGATGAAAAGCCCGGTTTTTAGCGAAGATGAGTCATCGGACAATTCG 1542
Query 1516 TTTTGGATCGATTTGGGTCAAAGTCCGCTCGGGTCTGACAGTGCGGGTCACTTGAACCAC 1575
|||||||| ||||||||||||||||| || || ||||| | | | || | ||
Sbjct 1543 TTTTGGATTGATTTGGGTCAAAGTCCTCTTGGTTCTGA---T-CAG--CA-T--AA---- 1589
Query 1576 CATAAAATCGCCTCTCCATTGCCACCGT-TTTGGTTTACCAGCAAAAGGCAATCAC---C 1631
||| || || ||||| ||||||| | ||||||| |||| ||| || || || |
Sbjct 1590 --TAAGATTGCATCTCCGCTGCCACC-TATTTGGTTGACCAACAAGAGA-AACCAGAAAC 1645
Query 1632 AAA-ACCG--G--TGG-C-AA-A--GA-G--TTACAGCAGTCCTAT-GTATGATGGTAAA 1677
||| || | | | | || | || | |||||||||||| || ||||||||||||
Sbjct 1646 AAAGACAGTCGCCTAAACTAATACCGAAGAGTTACAGCAGTCC-ATTGTATGATGGTAAT 1704
Query 1678 GATGTCCTCTCGTTTGATGCTGCAGTAATGTCAGTTACTCAGGA-G--ATAAACTCTACG 1734
|| |||||||| ||||||||||| || ||||||||||| || | | | |||||| ||
Sbjct 1705 GACGTCCTCTCATTTGATGCTGCCGTTATGTCAGTTACAGAGCACGGGACAAACTCAACT 1764
Query 1735 CCATCACGGAATCTGAGGAACTCTAATAATC-TC-CAAA-TTCAAGAGATACAGGAAGAA 1791
||||| |||||| ||||| ||||| ||| | || | | |||||||||||||||||||
Sbjct 1765 CCATCGCGGAATAGGAGGAGCTCTAGTAACCATCTCTATGTTCAAGAGATACAGGAAGAG 1824
Query 1792 AACTGCGGTAATATTGTGTATCGTGCAGGATCTGGTTTTGGATCAAATGGCTCAAGCTCC 1851
|||||| || ||| | | | | ||| || || || | | || | | | |||
Sbjct 1825 AACTGCAGTCATA--GC-T-T-G-GCAA-AT--GGCTT-G-A--AA-T--C----G-TCC 1863
Query 1852 AAGATTTCTTCAGATATGAAAGATAACGCAATTAGACGAGAAACAGAAGGTGAGTTTAGG 1911
|| ||||| ||||| || ||||| | || |||||||||||||||||||| || || |||
Sbjct 1864 AACATTTCATCAGAAATCAAAGACAGTGCTATTAGACGAGAAACAGAAGGAGAATTCAGG 1923
Query 1912 TTATTGGGAAGAAGGGGTA-CTGGTGG--G-AGGCTTTTGGGTTTGGAAGATGAACAACC 1967
||||||||| |||| | | | ||| | | ||||| |||||| |||| |||||||| ||
Sbjct 1924 TTATTGGGAGGAAGAGATGGC-GGTAGAAGCAGGCTATTGGGTGTGGAGGATGAACATCC 1982
Query 1968 AAGCAGAGGAACAAGGGTTTCATTTAACATGGACCGTGTCAGTCATAGTC-T-G--GA-C 2022
|||| ||||| | ||||||| ||||||||||| ||||| |||||||| | | | || |
Sbjct 1983 GAGCAAAGGAAGACGGGTTTCGTTTAACATGGAACGTGTTAGTCATAG-CATAGTAGAGC 2041
Query 2023 CAAGGTGAAGCTTCTCTGGCCAG--TGTAT-ATGACGA--A-AGT-----GA-TG--GT- 2067
| |||||||||||||| || || | ||| |||| || | | | || || ||
Sbjct 2042 CC-GGTGAAGCTTCTCTAGCTAGCATTTATGATGAAGATTACAATAACACGAGTGATGTT 2100
Query 2068 GAAAACCC-GA--ATGAGG----A--TGAT---TGGGACAGAAGGGAG-CC----C-GAG 2109
||||| || |||||| | |||| ||||| || || || || | |||
Sbjct 2101 GAAAATGGAGATGATGAGGGTGCAGATGATGAATGGGAAAGGAGAGATACCGAAACTGAG 2160
Query 2110 ATTGTTTGCAGCCATATCGATCATGTGAATATGTTAGGTCTTAATAAAACCACAA-GTAG 2168
||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| | ||
Sbjct 2161 ATTGTTTGCAGACATATTGATCATGTGAATATGTTAGGTCTTAATAGAACCACAACG-AG 2219
Query 2169 GCTCAGATTTCTGATTAACTGGCTAGTGATCTCTTTGCTACAGCTTA-AAGTGCCTGAAC 2227
||||| ||||||||||||||||||||||| || || || || || | |||||||||||
Sbjct 2220 ACTCAGGTTTCTGATTAACTGGCTAGTGATATCGTTACTGCAACT-ACAAGTGCCTGAAT 2278
Query 2228 CAGGCAGTGACGGTAGTAGCAGATACATGAATCTTGTGCAGATTTATGGCCCAAAGAT-A 2286
|||| || | | || | | | |||||||||||||||||||||||| || ||||| |
Sbjct 2279 CAGG-AG-G-C---AG-A--A-A--CATGAATCTTGTGCAGATTTATGGGCCGAAGATCA 2326
Query 2287 AAGTACGAAAGAGGAGCGGCAGTTGCTTTCAACGTGAAAGACAAAAGCAAAGGATTTGTA 2346
|| |||||||||||||| || ||||| ||||| |||| ||| ||||||||||| |||||
Sbjct 2327 AA-TACGAAAGAGGAGCAGCGGTTGCATTCAATGTGAGAGATAAAAGCAAAGGCTTTGTT 2385
Query 2347 AGTCCAGAAATTGTTCTGAAACT-GGCTGAGAGAGAAGGTGTATCTCTTGGTATTGGAAT 2405
||||| |||||||||| || ||| || ||| ||||||||| ||||||| || ||||| ||
Sbjct 2386 AGTCCGGAAATTGTTCAGAGACTCGG-TGAAAGAGAAGGTATATCTCTCGGCATTGGTAT 2444
Query 2406 ATTGAGTCACATACGCATAATGGATCTT---CCGAGAAACCACCGTGGAGGCGCTAGGA- 2461
||||||||||||||||||| ||||| | || |||||||| | ||| | | |||
Sbjct 2445 ATTGAGTCACATACGCATAGTGGATGATAAACCAAGAAACCA---TAGAG-CTC--GGAC 2498
Query 2462 TCAAGGAAGATAGTTCTTTGCATCT-GCAGAGA-GAAGCTGGTAAACGTGGTGGTAAAAA 2519
| ||| |||||||| ||||||| || ||||| | ||||| || || |||||
Sbjct 2499 TAAAG-AAGATAGTGCTTTGCA-CTTGCAGA-ATGAAGC-------CG-GG----AAAAA 2543
Query 2520 TGGGTTCGTGCGATTTGAGGTTGTCACAGCTTCTCTAAGCTTTTTGTCGAACTTTGAGGA 2579
|| || | ||||||||||||| ||||||||||| ||||| ||| | |||||||| ||
Sbjct 2544 CGGATTTATAAGATTTGAGGTTGTTACAGCTTCTCTTAGCTTCTTGACAAACTTTGAAGA 2603
Query 2580 TGTTTATAAGCTATGGGCTTTTGTAGCCAAGTTCCTAAACCCC-GGTTTCAGCAGAGAAG 2638
|||||| ||||| ||||| || || ||||||||||||| |||| ||||||||||||||||
Sbjct 2604 TGTTTACAAGCTTTGGGCATTCGTCGCCAAGTTCCTAA-CCCCTGGTTTCAGCAGAGAAG 2662
Query 2639 GATCACTACCGACTGTA-ATAGAAGAAGAAGCAGAAGATTCAGAGACGTGA 2688
| || || || ||||| | ||||||||||||||| |||||||||||||||
Sbjct 2663 GTTCGCTTCCTACTGTCGA-AGAAGAAGAAGCAGAGGATTCAGAGACGTGA 2712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111490147115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5