BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23530.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320173 jgi|Araly1|320173|fgenesh1_pm.C_scaffold_4000230 2158 0.0
> Ahg320173 jgi|Araly1|320173|fgenesh1_pm.C_scaffold_4000230
Length=1701
Score = 2158 bits (1168), Expect = 0.0
Identities = 1528/1695 (90%), Gaps = 52/1695 (3%)
Strand=Plus/Plus
Query 61 ATGCTCACCATGAGAACTGAAGCACAAGATTCAGTACCTAAATCAAACCCTAATCCGGAA 120
||||||||||||||||| |||||||||||||| ||| ||| ||||||||| || | |
Sbjct 1 ATGCTCACCATGAGAACCAAAGCACAAGATTCAACACCCAAAACAAACCCTACCCCAGTA 60
Query 121 CTAATCAAAGAAACCCCAAAGGTCTCTCTTTACGAACAATGCAGGGAAGAGAGGATCAAA 180
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTAATCAATGAAACCCCAAAGGTCTCTCTTTACGAACAATGCAGAGAAGAGAGGATCAAA 120
Query 181 GAGAATCTTCAGAGGATG-AACAATCTGGGTCTCTTAAATCTCTCTCGCAAACTCAAACC 239
|||||||||||||||||| || ||| ||||| |||| |||||||||||||||||||||||
Sbjct 121 GAGAATCTTCAGAGGATGCAA-AATTTGGGTATCTTGAATCTCTCTCGCAAACTCAAACC 179
Query 240 CAAGACCCGACCCGTTAAAAGATCTTACGGTAACCGTAATT-CTGTTCAGAATCCGACTC 298
| ||||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||
Sbjct 180 CCAGACCCGACCCGTTAAAAGATCTTATGGTAACCCTAATTCCT-CTCAGAATCCGACTC 238
Query 299 CTCCTCTTCAGCCTTCTCGCCGATCTTCTCGATTGGAGAACACAACTCCAGTTATCTACA 358
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 239 CTCCTCTTCAGCCTTCTCGTCGATCTTCTCGATTGGAGAACACAACTCCAGTAATCTACA 298
Query 359 CTGATGGGATCAATGAGAAGGGCAAGAAAGCATCTAAACGAGAGAGTGT--T-GTGATTG 415
||||||||||| |||||||||| |||||| ||||||||||||||||||| | |||||||
Sbjct 299 CTGATGGGATCTATGAGAAGGGTAAGAAAACATCTAAACGAGAGAGTGTGGTGGTGATTG 358
Query 416 GTGAAGGGATAAGAGCTGAGATTTACACAGAGGAACATGAGAAGCTTCTTGGGAATACAG 475
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGAAGGGATAAGAGCCGAGATTTACACAGAGGAACATGAGAAGCTTCTTGGGAATACAG 418
Query 476 AAAGAAGCTGGACTTGTTTTGTTGATGGCTATGATAAGAATGGGAAACGGATTTATGATC 535
|| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 419 AACGAAGCTGGACTTGTTTTGTTGATGGTTATGATAAGAATGGTAAACGGATTTATGATC 478
Query 536 CGTTTAACGGTAAGACTTGTCACCAATGCAGGCAGAAGACGATGGGGCATCGTACACAGT 595
|||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct 479 CGTTTAACGGTAAGACTTGTCATCAATACAGGCAGAAAACGATGGGATATCGTACACAGT 538
Query 596 GCAGTGAATGCAATTTGGTTCAAGGACAGTTCTGTGGTGATTGTTTGTTCATGAGATATG 655
|||| |||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 539 GCAGCGAATGCAACCTGGTTCAAGGACAATTCTGTGGAGATTGTTTGTTCATGAGATATG 598
Query 656 GTGAACATGTGCTTGAAGCTCTTGAGAATCCAGACTGGATTTGTCCCGCTTGTCGCGGGA 715
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 599 GTGAACATGTGCTTGAAGCTCTTGAGAATCCAAACTGGATTTGTCCTGCTTGTCGGGGGA 658
Query 716 TCTGCAATTGCAGTTTGTGCCGGAATAATAAAGGATGGGTTCCAACTGGCCCGATTTACA 775
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTGCAATTGCAGCTTGTGCCGGAATAATAAAGGATGGGTTCCAACTGGCCCGATTTACA 718
Query 776 GAAGGATAGCTGCACTTGGGTATAAGTCTGTGGCACATTATCTGATTCAAACCAAACGGG 835
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 GAAGGATAGCTGCACTTGGGTATAAGTCTGTAGCACATTATCTGATTCAAACCAAACGGG 778
Query 836 CGCCAACTGATGACACAACACCAAGTCAAGCGTCTGCAAAGAGATCACTTTCCTTTCAAG 895
||| |||| | || || | |||| |||||| ||||||||||||||||||||||||||||
Sbjct 779 CGCAAACTCAAGATGCAGCCCCAAATCAAGCTTCTGCAAAGAGATCACTTTCCTTTCAAG 838
Query 896 AAAAGATTGCTGGTGATGAAGACGTACCAATGCTTGAGAATGATGATTCCTTACAGAAAG 955
|| |||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 839 GAATGATTGCTGATGATGAAGAAGTACCAACGCTTGAGAATGATGATTCCTTGCAGAAAG 898
Query 956 AAGAAGGTGAAAACACGAACGAAGATCAGAATGGTGATCTCCCTGAAGAAGTACAAAAGG 1015
| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 AGGAAGATGAAAACACAAACGAAAATCAGAATGGTGATCTCCCTGAAGAAGTACAAAAGC 958
Query 1016 TTCAGAATATGGAATGTCAGAGTGGTGGTTCCTTGAAGAAAGAGGAGGATGAGACACCAA 1075
|||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 959 TTCAGAATATCGAAAATCAGAGTGGTGATTCCTTGAAGAAAGAGGAGGATGAGACTCCAA 1018
Query 1076 ATTCAGCTAGAAGGTCACTGAGCTTCTTATTGCCTTCTGTAGAGGATGATCAAACTTCAT 1135
|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 1019 ATTCAGCTAGAAGGTCACTGAGCTTCTTATTGCCTTCTGTTGA---TGATCAAACTTCGT 1075
Query 1136 TGGTGGATGTTCAGGTCTTAAGTTGTCTTGTGCCACCAAAGCAAGAACATTCATGTGCAC 1195
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1076 TCGTGGATGTTCAGGTCTTAAGTTGTCTTGAGCCACCAAAGCAAGAACATTCATGTGCCC 1135
Query 1196 ACAATGGTGATGATCTTCCAGATA-TTCAGGAAAGGATAGGAC-AACACTCAAATTTGGA 1253
|||||||||||||||||||||| | ||| ||||| |||||||| || |||| ||||||||
Sbjct 1136 ACAATGGTGATGATCTTCCAGA-AGTTCGGGAAAAGATAGGACGAA-ACTCGAATTTGGA 1193
Query 1254 GACGAAACCAGATAGCTACTTGCTTCATGTGGATGAGCAGATTCCATTGGTTGATGTTCA 1313
|| | |||||||||| ||||||||| ||| ||||| |||| |||||| ||| |||||||
Sbjct 1194 GATGCTACCAGATAGCGACTTGCTTCCTGTAGATGATCAGACTCCATTTGTTAATGTTCA 1253
Query 1314 GGTCTTGAGTTATCTTGAGACGCCGAAGCA--A-------GAACATTCATGTGCCCACAT 1364
|||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 1254 GGTCTTGAGTTATCTTGAGACGCCAAAGCAGGATAAACAAGAACATTCATGTGCCCACAG 1313
Query 1365 TGGTGATGGTCTTCCAAAAATTCAAGAATGGATAGGACAAGACCCGACTTCTG-AGACAA 1423
|||||||| |||||||||||||||| |||||| |||||||||||||| || || ||||||
Sbjct 1314 TGGTGATGATCTTCCAAAAATTCAAAAATGGACAGGACAAGACCCGAATT-TGGAGACAA 1372
Query 1424 AACCAGTTAGCTACTTGATTCCTATAGATGATGATCAAACTTCATTGGTGGATGCGCAGG 1483
||||||| |||||||||||||||| | |||||||||||| ||||||||||||| ||||
Sbjct 1373 GACCAGTTGGCTACTTGATTCCTAT-G--GATGATCAAACTCCATTGGTGGATGCACAGG 1429
Query 1484 TCATG--T-ATCTTGAGACACCAAAGCAAGATAAACAAGAACATTCATGTGCCCACATCG 1540
|| || | |||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1430 TCTTGAGTTATCTTGAGACGCCAAAGCAGGATAAACAAGAACATTCATGTGCCCACATTG 1489
Query 1541 GTGATGATCTTCCAGAAATTCAACAAGGGACAGGACAAGACTCGAATTTGGAGACAAGAC 1600
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 1490 ATGATGATCTTCCAGAAATAGAAGAAGGGACAGGACAAGATTCGAATTTGGAGACAAGTT 1549
Query 1601 TTGGGGAAAGTCAGACCCTTGT-G-----G-TCA-AA-G---C--T-----C--GAGTAA 1639
||||||||||||||||| |||| | | ||| || | | | | ||||||
Sbjct 1550 TTGGGGAAAGTCAGACCGTTGTTGTCAAAGCTCAGAACGAGTCAGTGAGTACTCGAGTAA 1609
Query 1640 CGAGAAGTAAGAGGAAAGCGGCTCTAGAACCAAATCCAGATAGCATTGGTGGAAGACTAA 1699
||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1610 CGAGAAGTAAGAGGAAAGCGGCTCTGGAACCTAATCCAAATAGCATTGGTGGAAGACTAA 1669
Query 1700 GGCAGCGAAGAAGGA 1714
||||||| ||||||
Sbjct 1670 GGCAGCGTCGAAGGA 1684
Score = 279 bits (151), Expect = 3e-74
Identities = 277/336 (82%), Gaps = 16/336 (5%)
Strand=Plus/Plus
Query 1273 TTG-CTTCATGTGGATGAGCAGA-TTCCATTGGTTGATGTTCAGGTCTTGAGTTATCTTG 1330
||| |||| ||| ||||| || | || | || || |||||||||||||| |||| |||||
Sbjct 1048 TTGCCTTC-TGTTGATGATCAAACTT-CGTTCGTGGATGTTCAGGTCTTAAGTTGTCTTG 1105
Query 1331 AGACGCCGAAGCAAGAACATTCATGTGCCCACATTGGTGATGGTCTTCCAAAAATTCAAG 1390
|| | || ||||||||||||||||||||||||| |||||||| ||||||| || ||| |
Sbjct 1106 AGCCACCAAAGCAAGAACATTCATGTGCCCACAATGGTGATGATCTTCCAGAAGTTCGGG 1165
Query 1391 AATGGATAGGAC-AAGACCCGACTTCT-GAGACAAAACCAGTTAGCTACTTGATTCCTAT 1448
|| |||||||| || || ||| || | |||| ||||| |||| ||||| ||||| |
Sbjct 1166 AAAAGATAGGACGAA-ACTCGAATT-TGGAGATGCTACCAGATAGCGACTTGCTTCCTGT 1223
Query 1449 AGATGATGATCAAACTTCATTGGTGGATGCGCAGGTCAT--G-TATCTTGAGACACCAAA 1505
| |||||||| ||| |||| || ||| |||||| | | ||||||||||| |||||
Sbjct 1224 --A-GATGATCAGACTCCATTTGTTAATGTTCAGGTCTTGAGTTATCTTGAGACGCCAAA 1280
Query 1506 GCAAGATAAACAAGAACATTCATGTGCCCACA-TCGGTGATGATCTTCCAGAAATTCAAC 1564
||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1281 GCAGGATAAACAAGAACATTCATGTGCCCACAGT-GGTGATGATCTTCCAAAAATTCAAA 1339
Query 1565 AAGGGACAGGACAAGACTCGAATTTGGAGACAAGAC 1600
|| |||||||||||||| ||||||||||||||||||
Sbjct 1340 AATGGACAGGACAAGACCCGAATTTGGAGACAAGAC 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5