BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23540.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481221 jgi|Araly1|481221|fgenesh2_kg.4__281__AT2G23540.1 1873 0.0
> Ahg481221 jgi|Araly1|481221|fgenesh2_kg.4__281__AT2G23540.1
Length=1310
Score = 1873 bits (1014), Expect = 0.0
Identities = 1149/1214 (95%), Gaps = 10/1214 (1%)
Strand=Plus/Plus
Query 2 TTTCTCAAAATCAAGAAATATGGCCACAAGAGCTTCTACATCTAGCAGAGTCTC-TCCA- 59
||| |||||||||||| |||||||||||||||||||||| || ||||||||||| |||
Sbjct 1 TTTTTCAAAATCAAGAGATATGGCCACAAGAGCTTCTACTTCAAGCAGAGTCTCAGCCAT 60
Query 60 -G-CTTTCACT-T-T-CCTCGTCATCTTCTTCCTCTTATCTCTCACTGCTTCAGTAGAAG 114
| | | ||| | | | ||| | |||||||||| ||| |||||||||||||||| ||||
Sbjct 61 GGAC-ATGACTCTCTACTTCGCCTTCTTCTTCCTTTTAACTCTCACTGCTTCAGTGGAAG 119
Query 115 CTGCTGGTCGTGGAGTTAACAATGACAAGAAAGGCGGCGGATTAGGAGCTTCTTTCATAT 174
||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 120 CTGCTGGTCGTGGAGTTAACAATGATAACAAAGGCAGCGGATTAGGAGCTTCTTTCATAT 179
Query 175 TCGGAGATTCTCTAGTCGATGCCGGAAATAATAATTATCTATCGACGTTGTCTAGGGCTA 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TCGGAGATTCTCTAGTCGATGCCGGAAATAATAATTATCTATCGACGTTGTCTAGGGCCA 239
Query 235 ATATGAAGCCTAATGGTATTGATTTCAAAGCCTCCGGAGGAACTCCTACCGGCCGGTTCA 294
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 ATATGAAGCCTAATGGTATTGATTTCAAAGCCTCCGGAGGAAATCCTACCGGCCGGTTCA 299
Query 295 CCAATGGACGGACCATCGGTGATATCGTTGGGGAAGAACTCGGATCAGCGAACTACGCGA 354
| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 300 CTAATGGCCGGACCATCGGTGACATCGTTGGGGAAGAACTCGGATCAGCGAACTGTGCGG 359
Query 355 TCCCGTTCTTGGCACC-AGACGCGAAGGGAAAAGCTTTATTAGCCGGAGTGAACTATGCA 413
|||| ||||||||||| | |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 360 TCCCATTCTTGGCACCTA-ACGCGAAGGGAAAAGCTTTATTAGCCGGTGTGAATTATGCA 418
Query 414 TCTGGAGGAGGAGGAATCATGAATGCCACCGGGAGAATCTTTGTGAATAGATTAGGTATG 473
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 TCTGGAGGAGGAGGAATCATGAATGCCACCGGGAGAATCTTTGTGAATAGGTTAGGTATG 478
Query 474 GATGTACAAGTTGATTTCTTCAACACTACACGGAAACAGTTTGATGATCTACTTGGAAAA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATGTACAAGTTGATTTCTTCAACACTACACGGAAACAGTTTGATGATCTACTTGGAAAA 538
Query 534 GAGAAAGCAAAAGATTACATAGCCAAGAAATCGATATTCTCAATCACTATAGGAGCAAAT 593
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 GAGAAAGCAAAAGAATACATAGGAAAGAAATCGATATTCTCAATCACTATAGGAGCAAAT 598
Query 594 GATTTCCTCAACAATTATCTATTCCCACTACTCTCGGTAGGAACACGGTTCACTCAAACT 653
||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||||
Sbjct 599 GATTTCCTCAACAATTATCTATTCCCACTTCTCTCCGTCGGAACACGGTTCAGTCAAACT 658
Query 654 CCCGATGATTTTATTGGCGACATGCTTGAACATCTACGCGACCAACTAACCAGGCTGTAT 713
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCCGATGATTTCATTGGCGACATGCTTGAACATCTACGCGACCAACTAACCAGGCTGTAT 718
Query 714 CAATTGGATGCGAGGAAGTTTGTGATCGGGAACGTTGGACCGATTGGATGCATACCGTAC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAATTGGATGCGAGGAAGTTTGTGATCGGGAACGTTGGACCGATTGGATGCATACCGTAC 778
Query 774 CAGAAAACAATCAATCAATTAGACGAAAACGAGTGTGTGGATTTGGCTAATAAACTAGCA 833
|||||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||||
Sbjct 779 CAGAAAACGATTAATCAATTAGAAGAAAACGATTGTGTGGACTTGGCTAATAAGCTAGCA 838
Query 834 AATCAATACAATGTTCGGTTAAAGAGTTTATTAGAGGAACTAAACAAGAAACTTCCCGGA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATCAATACAATGTTCGGTTAAAGAGTTTATTAGAGGAACTAAACAAGAAACTTCCCGGA 898
Query 894 GCAATGTTTGTCCATGCAAACGTCTACGATCTCGTCATGGAGCTCATTACTAACTACGAT 953
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCAATGTTCGTCCATGCCAATGTCTACGATCTCGTCATGGAGCTCATTACTAACTACGAT 958
Query 954 AAATACGGGTTCAAAAGTGCGACAAAGGCTTGTTGCGGTAATGGAGGACAATACGCGGGT 1013
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 959 AAATACGGGTTCAAATCTGCGACAAAGGCTTGTTGCGGTAATGGAGGACAATAAGCGGGT 1018
Query 1014 ATAATTCCGTGCGGACCGACTTCGAGTTTGTGTGAAGAGAGGGATAAATATGTGTTTTGG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATAATTCCGTGCGGACCGACTTCGAGTTTGTGTGAAGAGAGGGATAAATATGTGTTTTGG 1078
Query 1074 GATCCTTATCATCCGAGTGAAGCAGCAAATGTCATCATCGCGAAGCAATTGTTATATGGT 1133
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1079 GATCCTTATCACCCGAGTGAAGCAGCAAATGTTATCATCGCAAAGCAATTGTTATATGGT 1138
Query 1134 GATGTTAAAGTTATATCTCCAGTTAATCTCAGCAAACTTAGAGATATGTGATTTGATTGT 1193
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GATACAAAAGTTATATCTCCTGTTAATCTCAGCAAACTTAGAGATATGTGATTTGATTGT 1198
Query 1194 TTGTTGAACTAAAT 1207
||||||||||||||
Sbjct 1199 TTGTTGAACTAAAT 1212
Score = 78.7 bits (42), Expect = 1e-13
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1308 TTTTAGTGAGAATGCTTTTGTTTTGTCAAGATGTGATAAAAT 1349
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TTTTAGTGAGAATGCTTTTGTTTTGTCAAGATGTGATAAAAT 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5