BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23550.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899674 jgi|Araly1|899674|Al_scaffold_0004_324 1131 0.0
Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 381 5e-105
> Ahg899674 jgi|Araly1|899674|Al_scaffold_0004_324
Length=798
Score = 1131 bits (612), Expect = 0.0
Identities = 741/803 (92%), Gaps = 10/803 (1%)
Strand=Plus/Plus
Query 11 ATGGAGAATAAGAACCAGAAGCGGTTTGTGCTCATCCATGGGGTGTGCCACGGGGCATGG 70
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAATAACAACCAGAAGCGGTTTGTGCTCGTCCATGGGGTGTGCCACGGCGCATGG 60
Query 71 ACTTGGGACAAGGTGAAAACGCAGCTGGAGGTTGCAGGTCACTGTGTGACGGCAGTGGAT 130
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 61 ACTTGGGACAAGGTGAAAACGCAGCTGGAGGCTGCAGGTCACTGTGTGACCGCGGTGGAT 120
Query 131 CTTGCTGCATCAGGTATAAACATGACCAAAGTGGAAGAGATTCAGACTCTGAACGATTAC 190
|| |||||||| ||| |||||||||||| ||||||||||||||||||||| || ||||||
Sbjct 121 CTAGCTGCATCGGGTGTAAACATGACCAGAGTGGAAGAGATTCAGACTCTAAAGGATTAC 180
Query 191 TGCAAACCATTGCTTGAGTTTCTGAGCTCGCTTGGCTCAGATGACGGTAAGGTGATTGTT 250
|||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 181 TGCAAACCGTTGCTTGAGTTTCTGAGCTCGCTTGGCCCAGATGACGATAAGGTGATTCTT 240
Query 251 GTTGCTCATAGCATGGGAGGAATATCCGCTGCACTTGCTGCTGACAGCTTCGCTTGTAAG 310
|| ||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||
Sbjct 241 GTAGCTCATAGCATGGGAGGAATATCAGCTTCACTTGCTGCTGACATCTACGCTTGTAAG 300
Query 311 ATTGCCGCTATTGTCTTTTTGACAGCTTTCATGCCCGACACAATAAACCCACCTGCTTAT 370
||||| ||||| ||||| |||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 301 ATTGCTGCTATAGTCTTCGTGACAGCTTTCAGGCCCGACACAAAAAACCCACCTGTTTAT 360
Query 371 GTTTACGAAAAGCTGCTCAGAAGCATTCCACAAGAGGAATGGTTGGACACC-ACGTGTGT 429
|||||||||||| | | |||||||||||||||||||||||||||||||||| | |||||
Sbjct 361 GTTTACGAAAAGGTACCCAGAAGCATTCCACAAGAGGAATGGTTGGACACCGA-GTGTG- 418
Query 430 GAA-CTACGGGAAACCTGATTTTCCTCTACAGTA-TACTCTTTTGGGACCAAAGTTTATG 487
||| |||||||| |||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 419 GAACCTACGGGACACCTGATTGTCCTCTACAG-AGTACTCTTTTGGGACCAAAGTTTATG 477
Query 488 GCCAAGAAAATGTATCAAAACTCTCCAGTTCAAGATCTTGAAGTGGTGAAGACATTAGTG 547
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||
Sbjct 478 GCCAAGAAAATGTATCAACACTCTCCAGTTCAAGATCTTGAATTGGTGAAGACGTTGGTG 537
Query 548 AGGGA-AAACCCGTTAGTTACAAACAATCTGGCAGGGACAAGAAGCTTTAGTGAGGAAGG 606
| ||| ||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 538 A-GGACAAATCCGATAGTTACAAACAATCTGGCAGGGACAATAAGCTTCAGTGAGGAAGG 596
Query 607 GTACGGATCCGTTACACGTATATATATTGTATGCAGAGAGGATCTTGTGGAAGTCGAAGA 666
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 597 GTACGGATCCGTTACACGTATATATATTGTATGCGGAGAGGATCTTGTGGAACCCGAAGA 656
Query 667 TTACCAGCGTTGGATGATTAGC-AACTTTCCACCAAAAGAAGTAATGGAGATCAAATGTG 725
||||||||| |||||||| | | |||||||| ||||||||||||||||| ||||||||||
Sbjct 657 TTACCAGCGCTGGATGATCA-CGAACTTTCCGCCAAAAGAAGTAATGGAAATCAAATGTG 715
Query 726 CAGATCATATGCCAATGTTCTCCAAGCCTCAAGAAGTTTGTGCTCTTCTCCTGGAGATTG 785
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAGATCACATGCCAATGTTCTCCAAGCCTCAAGAAGTTTGTGCTCTTCTCCTGGAGATTG 775
Query 786 CAAATAAATATTGCAAAAATTAA 808
|| ||||||||||| ||| ||||
Sbjct 776 CAGATAAATATTGCCAAACTTAA 798
> Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235
Length=792
Score = 381 bits (206), Expect = 5e-105
Identities = 395/484 (82%), Gaps = 21/484 (4%)
Strand=Plus/Plus
Query 322 TGTCTTTTTGACAGCTTTCATGCCCGACACAATAAACCCACC-TGCTTATGTTTA-CGAA 379
|||||| |||||||| ||||||||||||| | | || |||| | ||| | | | ||
Sbjct 315 TGTCTTCGTGACAGCTATCATGCCCGACACCACACACTCACCATCCTT-CG-TAATGGAT 372
Query 380 AAGCTGCTCAGAA-GCATTCCACAAGAGGAATGGTTGGACACCACGTGTGTGAACTA-CG 437
||||| | || ||||| ||| ||| |||||||| |||| | ||||| | |||| ||
Sbjct 373 AAGCT-AAGACAAGGCATTTCACGAGAAGAATGGTTAGACA-C-CGTGT-T-TACTAGCG 427
Query 438 GGAAACCTGATTTTCCTCTACAGTATACTCTTTTGGGACCAAAGTTTATGGCCAAGAAAA 497
||||||||| | ||||| | ||| | ||||||| |||||||| || |||||||||||
Sbjct 428 AGAAACCTGACTGTCCTCGAGAGTTTTCTCTTTTTGGACCAAAATTCATGGCCAAGAACT 487
Query 498 TGTATCAAAACTCTCCAGTTCAAGATCTTGAAGTGGTGAAGACATTAGTGAGG--GAAAA 555
||||||| |||||||| |||||||||||| ||| ||| | || |||||| | ||
Sbjct 488 TGTATCAGTTGTCTCCAGTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAGGCCG-CAA 546
Query 556 CCCGTTAGTTAC-AAACAATCTGGCAGGGACAAGAAGCTTTAGTGAGGAAGGGTACGGAT 614
|| ||| |||| ||| |||||||||| || ||| ||||| ||||||||||| |||||||
Sbjct 547 -CCATTAATTACGAAA-AATCTGGCAGAGAAAAGTAGCTTCAGTGAGGAAGGCTACGGAT 604
Query 615 CCGTTACACGTATATATATTGTATGCAG-AGAGGATCTTGTGGAAGTCGAAGATTACCAG 673
||||| |||||||||||||||||||| | | |||||||||||| | ||| |||||||||
Sbjct 605 CCGTTCCACGTATATATATTGTATGC-GAAAAGGATCTTGTGGTACCCGAGGATTACCAG 663
Query 674 CGTTGGATGATTAGCAACTTTCCACCAAAAGAAGTAATGGAGATCAAATG-TGCAGATCA 732
|||| |||||| | ||||||||| ||||||||||||||||||||| | |||||||||
Sbjct 664 CGTTCGATGATCAACAACTTTCCGGTGAAAGAAGTAATGGAGATCAAA-GATGCAGATCA 722
Query 733 TATGCCAATGTTCTCCAAGCCTCAAGAAGTTTGTGCTCTTCTCCTGGAGATTGCAAATAA 792
|||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 723 TATGCCAATGTTCTCCAAGCCTCAAGAACTATGTGCTCTTCTCTTGGAGATTGCAAATAA 782
Query 793 ATAT 796
||||
Sbjct 783 ATAT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5