BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23570.1
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899675 jgi|Araly1|899675|Al_scaffold_0004_325 754 0.0
Ahg481225 jgi|Araly1|481225|fgenesh2_kg.4__285__AT2G23580.1 516 9e-146
Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 353 8e-97
> Ahg899675 jgi|Araly1|899675|Al_scaffold_0004_325
Length=540
Score = 754 bits (408), Expect = 0.0
Identities = 497/541 (92%), Gaps = 2/541 (0%)
Strand=Plus/Plus
Query 148 ATGGGAGGAATACCCGCTGCGCTTGCTGCTGACATATTCTCTTGTAAGATTTCTGCTGTT 207
||||||||||||||||||||| |||| |||| || ||| ||||||||||| ||||||||
Sbjct 1 ATGGGAGGAATACCCGCTGCGGTTGCAACTGATATCTTCCCTTGTAAGATTGCTGCTGTT 60
Query 208 GTCTTCTTGGCAGCTTTCATGCCTGACACAAGAAACCCACCTGCTTATGTTTTCGAAAAG 267
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GTTTTCTTGGCAGCTTTCATGCCTGACACAAGAAATCCACCTGCTTATGTTTTCGAAAAG 120
Query 268 CTGATCAGAAGTATTCCACGAGAAGAATGGTTGGACACCGCGTTCGGAAGGTACGGGAAT 327
||||||||||| ||||||||||| ||||||||||| |||| ||| ||||||||||| |||
Sbjct 121 CTGATCAGAAGCATTCCACGAGAGGAATGGTTGGATACCGTGTTTGGAAGGTACGGTAAT 180
Query 328 CCAGATTGTCCTCTTGAGTCAGCTCTTTTGGGACCAAAGTTCATGGCCAAGAAAGTGTAT 387
||||||||| |||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 181 CCAGATTGTTCTCTAGAGTCTGCTCTTTTGGGACCAAATTTTATGGCCAAGAAAGTGTAT 240
Query 388 CAACGGTCTCCAATAGAAGATCTTGAACTGGCGAAAATGTTGGTAAGGGTAAACCCGTTG 447
||| |||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 241 CAATTGTCTCCGGTAGAAGATCTTGAATTGGCCAAAATGTTGGTAAGGGTAAACCCGTTG 300
Query 448 GTTACGAATAATCTGGCAGGGGCAAGAAGCTTTACTGGGGAAGGATATGGATCGGTTACA 507
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 GTTACGAACAATCTGGCAGGGGCAAGAAGCTTTACTGAGGAAGGATATGGATCGGTTACA 360
Query 508 CGTATTTATATCATAAGTGGAGAGGATAATATATTACCTGAGGACTACCAGCGTTGGATG 567
||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 361 CGTATTTATATCATATGTGGAGAGGACAATATAGTACCTGAGGACTACCAGCGTTGGATG 420
Query 568 ATCCGCAACTTCCCGGTGAAAGAAGTAATGGAGATCAAAGATGCAGATCATATGGCAATG 627
||| | ||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 421 ATCAGTAACTTTCCGGTTAAAGAGGTAATGGAGATCAAAGATACAGATCATATGGCAATG 480
Query 628 TTCTCCAAGCCT-AAGGAACTATGTGCTCTTCTCTTGGAGATTGCAGATAAATACGCCTA 686
||||| |||||| || || ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 481 TTCTCTAAGCCTCAAA-AATTATGTGCTCTTCTCTTGGAGATTGCGGATAAATACGCGTA 539
Query 687 A 687
|
Sbjct 540 A 540
> Ahg481225 jgi|Araly1|481225|fgenesh2_kg.4__285__AT2G23580.1
Length=1044
Score = 516 bits (279), Expect = 9e-146
Identities = 459/546 (84%), Gaps = 12/546 (2%)
Strand=Plus/Plus
Query 148 ATGGGAGGAATACCCGCTGCGCTT-GCTGCTGACATATTCTCTTGTAAGATTTCTGCTGT 206
|||||||||||||||||||| || |||||||| |||||| ||| ||||||| || ||||
Sbjct 268 ATGGGAGGAATACCCGCTGC-TTTCGCTGCTGATATATTCCCTTATAAGATTGCTTCTGT 326
Query 207 TGTCTTCTTGGCAGCTTTCATGCCTGACACAAGAAACCCACCTGCTTATGTTTTCGAAAA 266
||| |||||| | ||||||||||| ||||||||||||||||| |||||||||| | ||||
Sbjct 327 TGTTTTCTTGACGGCTTTCATGCCCGACACAAGAAACCCACCAGCTTATGTTTACCAAAA 386
Query 267 GCTGATCAGAAGTATTCCACGAGAAGAATGGTTGGACACCGCGTTCGGAAGGTACGGGAA 326
||| |||||||| | |||| ||||| ||||||||||||| ||| |||| |||||||||
Sbjct 387 GCTAATCAGAAGCGTCCCACAAGAAGGATGGTTGGACACCTTGTTTGGAACGTACGGGAA 446
Query 327 TCCAGATTGTCCTCTTGAGTCAGCTCTTTTGGGACCAAAGTTCATGGCCAAGAAAGTGTA 386
|| || |||||||| |||| |||||||| ||||| ||||||||||||||||| ||||
Sbjct 447 ACCTGAATGTCCTCTAGAGTTTGCTCTTTTTGGACCGAAGTTCATGGCCAAGAATTTGTA 506
Query 387 TCAACGGTCTCCAATA-GAAGATCTTGAACTGGCGAAAATGTTGGTAAGGGTAAACCCGT 445
||||| ||||| | ||||||||||| |||||||||||||||| || ||||||||
Sbjct 507 TCAACTCTCTCC-GGACCAAGATCTTGAATTGGCGAAAATGTTGGTGAGAGTAAACCCCA 565
Query 446 TGGTTACGAATAATCTGGCAGGGGCAAGAAGCTTTACTGGGGAAGGATATGGATCGGTTA 505
| |||| ||||||||||||||| |||||||||| | || |||||| || ||||| |||
Sbjct 566 TCATTACAAATAATCTGGCAGGGACAAGAAGCTTCAGTGAGGAAGGTTACGGATCCATTA 625
Query 506 CACGTATTTATATCATAAGTGGAGAGGATAAT-ATATTACCTGAGGACTACCAGCGTTGG 564
|||| || |||||| || |||||||||| | || |||| ||||| |||||| |||||
Sbjct 626 CACGAATATATATCGTATGTGGAGAGGA-CTTGGTAGTACCCGAGGATTACCAGTGTTGG 684
Query 565 ATGATC-CGCAACTTCCCGGTGAAAGAAGTAATGGAGATCAAAG-ATGCAGATCATATGG 622
|||||| | ||||| ||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 685 ATGATCAAG-AACTTTCCGCCAAAAGAAGTAATGGAGATC-AAGTGTGCAGATCATATGG 742
Query 623 CAATGTTCTCCAAGCCTAAGGAACTATGTGCTCTTCTCTTGGAGATTGCA-GATAAATAC 681
||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||
Sbjct 743 CAATGTTCTCCAAGCCTCACGAACTATGTGCTCTTCTCTTGGAGATTGCATG-TAAATAT 801
Query 682 GCCTAA 687
|||||
Sbjct 802 TCCTAA 807
> Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235
Length=792
Score = 353 bits (191), Expect = 8e-97
Identities = 391/487 (80%), Gaps = 15/487 (3%)
Strand=Plus/Plus
Query 207 TGTCTTCTTGGCAGCTTTCATGCCTGACACAAGAAACCCACC-TGCTTATGTTTTCGAAA 265
||||||| || ||||| ||||||| ||||| | | || |||| | ||| || | || |
Sbjct 315 TGTCTTCGTGACAGCTATCATGCCCGACACCACACACTCACCATCCTT-CGTAATGGATA 373
Query 266 AGCTGATCAGAA-GTATTCCACGAGAAGAATGGTTGGACACCGCGTTCGGAAGGTA-CGG 323
|||| | | || | ||| |||||||||||||||| ||||||| ||| | || ||
Sbjct 374 AGCT-AAGACAAGGCATTTCACGAGAAGAATGGTTAGACACCGTGTT---TA-CTAGCGA 428
Query 324 GAATCCAGATTGTCCTCTTGAGTCAGCTCTTTTGGGACCAAAGTTCATGGCCAAGAAAGT 383
||| || || ||||||| |||| ||||||| |||||||| |||||||||||||| |
Sbjct 429 GAAACCTGACTGTCCTCGAGAGTTTTCTCTTTTTGGACCAAAATTCATGGCCAAGAACTT 488
Query 384 GTATCAACGGTCTCCAATAGAAGATCTTGAACTGGCGAAAATGTTGGTAAGG--GTAAAC 441
|||||| ||||||| | ||||||||||| |||||||||||||||| ||| | ||
Sbjct 489 GTATCAGTTGTCTCCAGTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAGGCCG-CAA- 546
Query 442 CCGTTGGTTACGAATAATCTGGCAGGGGCAAGAAGCTTTACTGGGGAAGGATATGGATCG 501
|| || ||||||| |||||||||| | ||| ||||| | || |||||| || |||||
Sbjct 547 CCATTAATTACGAAAAATCTGGCAGAGAAAAGTAGCTTCAGTGAGGAAGGCTACGGATCC 606
Query 502 GTTACACGTATTTATATCATAAGTGGAGAGGATAATATATTACCTGAGGACTACCAGCGT 561
||| ||||||| ||||| || | | | ||||| | | |||| ||||| |||||||||
Sbjct 607 GTTCCACGTATATATATTGTATGCGAAAAGGATCTTGTGGTACCCGAGGATTACCAGCGT 666
Query 562 TGGATGATCCGCAACTTCCCGGTGAAAGAAGTAATGGAGATCAAAGATGCAGATCATATG 621
| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCGATGATCAACAACTTTCCGGTGAAAGAAGTAATGGAGATCAAAGATGCAGATCATATG 726
Query 622 GCAATGTTCTCCAAGCCT-AAGGAACTATGTGCTCTTCTCTTGGAGATTGCAGATAAATA 680
||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 727 CCAATGTTCTCCAAGCCTCAAG-AACTATGTGCTCTTCTCTTGGAGATTGCAAATAAATA 785
Query 681 CGCCTAA 687
||||||
Sbjct 786 TGCCTAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25237371054
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5