BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23600.1
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481226 jgi|Araly1|481226|fgenesh2_kg.4__286__AT2G23600.1 1243 0.0
Ahg481229 jgi|Araly1|481229|fgenesh2_kg.4__289__AT2G23620.1 761 0.0
Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 436 1e-121
Ahg944170 jgi|Araly1|944170|scaffold_700399.1 63.9 2e-09
> Ahg481226 jgi|Araly1|481226|fgenesh2_kg.4__286__AT2G23600.1
Length=888
Score = 1243 bits (673), Expect = 0.0
Identities = 802/864 (93%), Gaps = 10/864 (1%)
Strand=Plus/Plus
Query 33 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCACGGCGCA 92
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTATGTGTCACGGCGCG 60
Query 93 TGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGTGTAACCGCCTTA 152
||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| ||
Sbjct 61 TGGTGCTGGTACAAGGTGAAGCCGCTGCTCGAGGCTTCAGGCCATCGTGTAACCGCCGTA 120
Query 153 GACCTAGCTGCTTCCGGTATAGACACAACCAGGTCAATCACTGACATTTCTACATGTGAA 212
||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||
Sbjct 121 GACCTAGCTGCTTGCGGTATAGACACTACCAGGTCAATCACTGAAATTTCCACATGCGAA 180
Query 213 CAATATTCTGAGCCATTGATGCAGCTAATGACTTCATTGCCGAATGATGAGAAGGTTGTA 272
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAATATTCTAAGCCATTGATGCAGCTAATGACTTCATTGCCGAATGATGAGAAGGTTGTG 240
Query 273 CTCGTTGGTCATAGCTTTGGAGGTTTGAGTTTAGCCTTAGCCATGGATAAGTTTCCCGAT 332
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct 241 CTCGTTGGTCATAGCTTCGGAGGTTTGAGTTTAGCCATAGCCATGGATAAGTTTCCAGAC 300
Query 333 AAAATCTCTGTCTCTGTCTTCGTGACTGCATTCATGCCCGACACCAAACACTCACCATCG 392
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 301 AAAATCTCTGTCTCTGTCTTCGTGACTGCTTTCATGCCTGACACCAAACACTCACCATCT 360
Query 393 TTCGTCGAGGAAAAGTTTGC---AAGCAGCATGACACCAGAAGGATGGATGGGCTCTGAG 449
||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 361 TTCGTCGAGGATAAGTTTGCAATAAGCAACATGACACCAGAAGGATGGATGGGCACTGAG 420
Query 450 CTCGAGACATATGGTTCAGATAATTCCGGCTTGTCTGTGTTCTTCAGCACCGACTTCATG 509
|||||||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct 421 CTCGAGACGTATGGTTCAGAGAATTCTGGCTTGTCTGTGTTATTCAGCACTGACTTCATG 480
Query 510 AAGCACCGTCTCTACCAACTTTCTCCTGTGGAGGATCTTGAGCTTGGATTGCTTCTAAAG 569
|||||||||||||||||||||| |||| | |||||||||||||||||||| |||||||||
Sbjct 481 AAGCACCGTCTCTACCAACTTTGTCCTATTGAGGATCTTGAGCTTGGATTACTTCTAAAG 540
Query 570 AGGCCTAGTTCATTGTTTATTAATGAATTATCGAAGATGGAGAACTTTTCTGA-GAAAGG 628
|||||| | ||||||||||||||||||||||||| | || ||||||||||||| | ||||
Sbjct 541 AGGCCTGGATCATTGTTTATTAATGAATTATCGAGGGTGAAGAACTTTTCTGATG-AAGG 599
Query 629 GTATGGATCTGTTCCTCGAGCTTACATTGTGTGCAAAGAGGACAACATTATCTCGGAAGA 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTATGGATCTGTTCCTCGAGCTTACATTGTGTGCAAAGAGGACAACATTATCTCGGAAGA 659
Query 689 CCATCAACGATGGATGATCCATAATTATCCGGCGAATTTAGTGATTGAGATGGAAGAGAC 748
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACATCAACGATGGATGATCGATAATTATCCGGCGAATTTAGTGATTGAGATGGAAGAGAC 719
Query 749 TGATCATATGCCAATGTTTTGCAAACCTCAACTACTAAGTGACCATCTATTGGCAATCGC 808
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 AGATCATATGCCAATGTTTTGCAAACCTCAACTACTAAGTGACCATCTATTGGAAATCGC 779
Query 809 TGACAATTTCTGTTAAATAATATTTTGATGAAAATGTATTTGGAGTGGATACA--A-TCA 865
||||| |||| |||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 780 CGACAAATTCTCTTAAATAATATTTTGATGAAAATGTATTTGGAGTTGATACATTAATCA 839
Query 866 AACGTGT-T-CTAAAATGGATCTT 887
| |||| | ||||||||||||||
Sbjct 840 AGTGTGTGTTCTAAAATGGATCTT 863
> Ahg481229 jgi|Araly1|481229|fgenesh2_kg.4__289__AT2G23620.1
Length=879
Score = 761 bits (412), Expect = 0.0
Identities = 705/844 (84%), Gaps = 29/844 (3%)
Strand=Plus/Plus
Query 33 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCACGGCGCA 92
||||||||||| |||||||| ||||| || || |||||||||||| ||||||| ||||||
Sbjct 31 ATGAGTGAGGAAAAGAGGAAACAACATTTTGTACTAGTACATGGTTCGTGCCATGGCGCA 90
Query 93 TGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGTGTAACCGCCT-T 151
||||||||||||||||||||||| || || ||||| |||||||||||||||||||| | |
Sbjct 91 TGGTGCTGGTACAAGGTTAAGCCGCTGCTAGAGGCGTTGGGCCATCGTGTAACCGC-TGT 149
Query 152 AGACCTAGCTGCTTCCGGTATAGACACAACCAGGTCAATCACTGACATTTCTACATGTGA 211
||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 150 GGACTTAGCTGCTTCTGGTATAGACACAACCAGGTCGATCACTGACATCCCTACATGCGA 209
Query 212 ACAATATTCTGAGCCATTGAT-GCAGCTAATGACTTCATTGCCGAATGATGAGAAGGTTG 270
|||||| || ||||||||| | | |||| | || |||||||| ||||||||||||||||
Sbjct 210 ACAATACTCGGAGCCATTG-TCGAAGCTGCTAACCTCATTGCCAAATGATGAGAAGGTTG 268
Query 271 TACTCGTTGGTCATAGCTTTGGAGGTTTGAGTTTAGCCTTAGCCATGGATAAGTTTCCCG 330
| |||||||||||||||||||| || |||| |||||| |||||||||| ||||||||||
Sbjct 269 TGCTCGTTGGTCATAGCTTTGGTGGCTTGAACTTAGCCATAGCCATGGAAAAGTTTCCCG 328
Query 331 ATAAAATCTCTGTCTCTGTCTTCGTGACTGCATTCATGCCCGACACCAAACACTCACCAT 390
| |||||||||||| |||| ||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 329 ACAAAATCTCTGTCGCTGTATTCTTGACTGCTTTCATGCCCGACACCGAACACTCACCAT 388
Query 391 CGTTCGTCGAGGAAAAGTTTGCAAGCAGCATGACACCAGAAGGATGGATGGGCTCTGAGC 450
| |||||| ||| ||||||| ||||| |||| ||||||||| |||||||||| | ||
Sbjct 389 CCTTCGTCTTGGACAAGTTTGGAAGCAACATGCCACCAGAAGCATGGATGGGCACGGAAT 448
Query 451 TCGAGACA-TATGGTTCAGATAATTCCGG-CTTGTCTGTGTTCTTCAGC-ACCGACTTCA 507
|||| || || |||||||| ||||| || || | | ||||||| ||| | || ||||
Sbjct 449 TCGA-ACCGTACGGTTCAGACAATTCTGGACT-GAGTATGTTCTTTAGCCAT-GAGTTCA 505
Query 508 TGAAGCACCGTCTCTACCAACTTTCTCCTGTGGAGGATCTTGAGCTTGGATTGCTTCTAA 567
||||| | |||||||||| |||||||| || ||||||||||| || ||||| ||| |||
Sbjct 506 TGAAGGTCGGTCTCTACCAGCTTTCTCCAGTTGAGGATCTTGAACTGGGATTACTTTTAA 565
Query 568 AGAGGCCTAGT-TCATTGTTTATTAATGAATTATCGAAGATGGAGAACTTTTCTGA-GAA 625
||||||| || || || |||||||| || |||||||||||| ||||||| || || |||
Sbjct 566 AGAGGCC-AGGATCGTTATTTATTAACGATTTATCGAAGATGAAGAACTTCTCAGATGAA 624
Query 626 AGGGTATGGATCTGTTCCTCGAGCTTACATTGTGTGCAAAGAGGACAA--CATTATCTCG 683
|| ||||| |||||||||||||||| ||| ||||||||||||||||| || | || |
Sbjct 625 -GGATATGGTTCTGTTCCTCGAGCTTTCATAGTGTGCAAAGAGGACAAAGCAAT-TC-CA 681
Query 684 GAAGACCATCAACGATGGATGATCCATAA-TTATCCGGCGAATTTAGTGATTGAGATGGA 742
||||| || ||| |||||||||| |||| || ||||| ||||||||||||||| |||||
Sbjct 682 GAAGAACACCAAAGATGGATGATTGATAACTT-TCCGGTGAATTTAGTGATTGAAATGGA 740
Query 743 AGAGACTGATCATATGCCAATGTTTTGCAAACCTCAACTACTAAGTGACCATCTAT--TG 800
|||||| ||||||||||||||||| ||||| ||||| | ||| | || || || | ||
Sbjct 741 AGAGACAGATCATATGCCAATGTTCTGCAAGCCTCAGCAACTCTGCGATCA-CT-TCCTG 798
Query 801 GCAATCGCTGACAATTTCTGTTAAAT-AATATTTTGATGAAAATGTATTTGGAGTGGATA 859
| ||||||||| ||||| |||| ||| ||| || | ||||||| |||| ||| | ||||
Sbjct 799 GAAATCGCTGAAAATTT-TGTTTAATCAATCTTCT--TGAAAATATATT-GGATTTGATA 854
Query 860 CAAT 863
|||
Sbjct 855 TAAT 858
> Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235
Length=792
Score = 436 bits (236), Expect = 1e-121
Identities = 324/367 (88%), Gaps = 4/367 (1%)
Strand=Plus/Plus
Query 33 ATGAGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCACGGCGCA 92
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCATGGCGCC 60
Query 93 TGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGTGTAACCGCCTTA 152
||||||||||||||||||||||| | |||||||||| ||||| |||||||||||||||
Sbjct 61 TGGTGCTGGTACAAGGTTAAGCCGCAGCTCGAGGCTTCAGGCCACCGTGTAACCGCCTTA 120
Query 153 GACCTAGCTGCTTCCGGTATAGACACAACCAGGTCAATCACTGACATTTCTACATGTGAA 212
|| |||||||| ||||||||| ||| ||||||||||||||||| || || ||||| |||
Sbjct 121 GATCTAGCTGCCTCCGGTATAAACATGACCAGGTCAATCACTGATATATCCACATGCGAA 180
Query 213 CAATATTCTGAGCCATTGATGCAGCTAATGACTTCATTGCC-GAATGATGAGAAGGTTGT 271
|| || || |||||||||| ||| |||||||| ||| | || || |||||||||||||||
Sbjct 181 CAGTACTCAGAGCCATTGACGCAACTAATGACCTCACTACCAGA-TGATGAGAAGGTTGT 239
Query 272 ACTCGTTGGTCATAGCTTTGGAGGTTTGAGTTTAGCCTTAGCCATGGATAAGTTTCCCGA 331
|||||||| |||||||| |||||||||||||||||| | |||||||||| |||||| |
Sbjct 240 GCTCGTTGGGCATAGCTTAGGAGGTTTGAGTTTAGCCGTGGCCATGGATATGTTTCCAAA 299
Query 332 TAAAATCTCTGTCTCTGTCTTCGTGACTGC-ATTCATGCCCGACACCAAACACTCACCAT 390
||||||||||| |||||||||||||| || || |||||||||||||| |||||||||||
Sbjct 300 CAAAATCTCTGTTTCTGTCTTCGTGACAGCTAT-CATGCCCGACACCACACACTCACCAT 358
Query 391 CGTTCGT 397
| |||||
Sbjct 359 CCTTCGT 365
> Ahg944170 jgi|Araly1|944170|scaffold_700399.1
Length=827
Score = 63.9 bits (34), Expect = 2e-09
Identities = 56/67 (84%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 81 TGCCACGGCGCATGGTGCTGGTACAAGGTTAAGCCTCTTCTCGAGGCTTTGGGCCATCGT 140
||||||||||||||||||||||||||||| || || | || || |||| ||||| |||
Sbjct 51 TGCCACGGCGCATGGTGCTGGTACAAGGTCAAACCGGTGCTGGAAGCTTCAGGCCACCGT 110
Query 141 GTAACCG 147
|| ||||
Sbjct 111 GTGACCG 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35263698225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5