BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23610.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235 1103 0.0
Ahg481225 jgi|Araly1|481225|fgenesh2_kg.4__285__AT2G23580.1 375 3e-103
> Ahg320178 jgi|Araly1|320178|fgenesh1_pm.C_scaffold_4000235
Length=792
Score = 1103 bits (597), Expect = 0.0
Identities = 731/796 (92%), Gaps = 8/796 (1%)
Strand=Plus/Plus
Query 130 ATGAGTGAGGAGGAGAGGAAGCAACACGTCGTTCTAGTACATGGTGCTTGCCATGGCGCC 189
||| |||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGGTGAGGAGAAGAGGAAGCAACACTTCGTGCTAGTACATGGTGCGTGCCATGGCGCC 60
Query 190 TGGTGCTGGTACAAGGTTAAGCCGCAGCTCGAGGCTTCTGGCCACCGCGTAACCGCCGTA 249
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 61 TGGTGCTGGTACAAGGTTAAGCCGCAGCTCGAGGCTTCAGGCCACCGTGTAACCGCCTTA 120
Query 250 GATCTAGCTGCCTCCGGTATAGACATGACCAGGTCAATCACAGATATATCCACATGCGAA 309
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GATCTAGCTGCCTCCGGTATAAACATGACCAGGTCAATCACTGATATATCCACATGCGAA 180
Query 310 CAATACTCAGAGCCATTGATGCAGCTAATGACCTCACTACCAGATGATGAGAAGGTTGTG 369
|| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGTACTCAGAGCCATTGACGCAACTAATGACCTCACTACCAGATGATGAGAAGGTTGTG 240
Query 370 CTTGTTGGTCATAGCTTAGGAGGTTTGAGTTTAGCTATGGCCATGGATATGTTTCCGACC 429
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 241 CTCGTTGGGCATAGCTTAGGAGGTTTGAGTTTAGCCGTGGCCATGGATATGTTTCCAAAC 300
Query 430 AAAATCTCTGTTTCTGTCTTTGTGACTGCTATGATGCCAGACACCAAACACTCACCATCC 489
|||||||||||||||||||| ||||| ||||| ||||| ||||||| |||||||||||||
Sbjct 301 AAAATCTCTGTTTCTGTCTTCGTGACAGCTATCATGCCCGACACCACACACTCACCATCC 360
Query 490 TTCGT-ATGGGATAAGCTAAGAAAAGAAACTTCACGAGAGGAATGGTTAGACACCGTGTT 548
||||| || ||||||||||||| ||| | ||||||||| ||||||||||||||||||||
Sbjct 361 TTCGTAAT-GGATAAGCTAAGACAAGGCATTTCACGAGAAGAATGGTTAGACACCGTGTT 419
Query 549 TACGAGCGAGAAACCTGATTTTCCTAGCGAGTTTTGGATTTTTGGACCAGAATTCATGGC 608
||| |||||||||||||| | |||| | ||||||| ||||||||||| ||||||||||
Sbjct 420 TACTAGCGAGAAACCTGACTGTCCTCGAGAGTTTTCTCTTTTTGGACCAAAATTCATGGC 479
Query 609 CAAGAACTTGTATCAGTTGTCTCCAGTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAG 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAGAACTTGTATCAGTTGTCTCCAGTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAG 539
Query 669 G--GCAAACCCATTGATTAAGAAAGATATGGCAGAGAGAAGAAGCTTCAGTGAGGAAGGA 726
| |||| || ||| |||| |||| || ||||||||| ||| |||||||||||||||||
Sbjct 540 GCCGCAA-CC-ATTAATTACGAAAAATCTGGCAGAGAAAAGTAGCTTCAGTGAGGAAGGC 597
Query 727 TACGGATCCGTTACACGTATATTTATTGTATGCGGAAAGGATCTTGTG-TCACCCGAAGA 785
|||||||||||| ||||||||| ||||||||||| ||||||||||||| | |||||| ||
Sbjct 598 TACGGATCCGTTCCACGTATATATATTGTATGCGAAAAGGATCTTGTGGT-ACCCGAGGA 656
Query 786 TTACCAGCGATCGATGATCAGCAACTTTCCCCCAAAAGAAGTAATGGAGATCAAAGACGC 845
||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 657 TTACCAGCGTTCGATGATCAACAACTTTCCGGTGAAAGAAGTAATGGAGATCAAAGATGC 716
Query 846 AGATCATATGCCAATGTTCTCCAAGCCTCAACAACTATGTGCTCTTCTCTTGGAGATTGC 905
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 AGATCATATGCCAATGTTCTCCAAGCCTCAAGAACTATGTGCTCTTCTCTTGGAGATTGC 776
Query 906 AAATAAATATGCCTAA 921
||||||||||||||||
Sbjct 777 AAATAAATATGCCTAA 792
> Ahg481225 jgi|Araly1|481225|fgenesh2_kg.4__285__AT2G23580.1
Length=1044
Score = 375 bits (203), Expect = 3e-103
Identities = 352/420 (84%), Gaps = 25/420 (6%)
Strand=Plus/Plus
Query 521 CACGAG-AGGAATGGTTAGACACCGTGTTT---ACG-AGCGAGAAACCTGATTTTCCTAG 575
||| || ||| |||||| |||||| ||||| ||| | || ||||||||| | ||||
Sbjct 404 CACAAGAAGG-ATGGTTGGACACCTTGTTTGGAACGTA-CGGGAAACCTGAATGTCCTCT 461
Query 576 CGAGTTTTG-GATTTTTGGACCAGAA-TTCATGGCCAAGAACTTGTATCAGTTGTCTCCA 633
||| |||| |||||||||| ||| |||||||||||||| |||||||| | |||||
Sbjct 462 AGAG-TTTGCTCTTTTTGGACC-GAAGTTCATGGCCAAGAATTTGTATCAACTCTCTCCG 519
Query 634 GTCCAAGATCTTGAATTGGCGAAAATGTTGGTGAGGGCAAACCC-ATTGATTAAGAAAGA 692
| ||||||||||||||||||||||||||||||||| | |||||| || |||| ||| |
Sbjct 520 GACCAAGATCTTGAATTGGCGAAAATGTTGGTGAGAGTAAACCCCATC-ATTAC-AAATA 577
Query 693 -TATGGCAGAGAGAAGAAGCTTCAGTGAGGAAGGATACGGATCCGTTACACGTATATTTA 751
| |||||| || ||||||||||||||||||||| ||||||||| ||||||| |||| ||
Sbjct 578 ATCTGGCAGGGACAAGAAGCTTCAGTGAGGAAGGTTACGGATCCATTACACGAATATATA 637
Query 752 TTGTATGCGGAAAGGATCTTG-T-GTCACCCGAAGATTACCAGCGATCGATGATCA-GCA 808
| ||||| ||| |||| |||| | || |||||| ||||||||| | | |||||||| | |
Sbjct 638 TCGTATGTGGAGAGGA-CTTGGTAGT-ACCCGAGGATTACCAGTGTTGGATGATCAAG-A 694
Query 809 ACTTTCCCCCAAAAGAAGTAATGGAGATCAAA-GACGCAGATCATATGCCAATGTTCTCC 867
||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 695 ACTTTCCGCCAAAAGAAGTAATGGAGATCAAGTGT-GCAGATCATATGGCAATGTTCTCC 753
Query 868 AAGCCTCAAC-AACTATGTGCTCTTCTCTTGGAGATTGCAAATAAATATGCCTAAATAAA 926
|||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 754 AAGCCTCA-CGAACTATGTGCTCTTCTCTTGGAGATTGCATGTAAATATTCCTAAATAAA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5