BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23620.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481229 jgi|Araly1|481229|fgenesh2_kg.4__289__AT2G23620.1 1325 0.0
> Ahg481229 jgi|Araly1|481229|fgenesh2_kg.4__289__AT2G23620.1
Length=879
Score = 1325 bits (717), Expect = 0.0
Identities = 827/881 (94%), Gaps = 3/881 (0%)
Strand=Plus/Plus
Query 14 GAGAGTAAGAAAATATCGAAGGTCAGAAGAATGAGTGAGGAAAAGAGGAAACAACATTTT 73
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGTAAGAAAATATTGAAGGTCAGAAGAATGAGTGAGGAAAAGAGGAAACAACATTTT 60
Query 74 GTACTAGTACATGGTTCGTGCCATGGCGCGTGGTGCTGGTACAAGGTTAAGCCGCTGCTA 133
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTACTAGTACATGGTTCGTGCCATGGCGCATGGTGCTGGTACAAGGTTAAGCCGCTGCTA 120
Query 134 GAGGCGGTGGGCCACCGCGTAACTGCTGTGGACTTAGCTGCCTCCGGAATAGACACAACG 193
|||||| ||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct 121 GAGGCGTTGGGCCATCGTGTAACCGCTGTGGACTTAGCTGCTTCTGGTATAGACACAACC 180
Query 194 AGGTCGATCACTGACATCCCCACATGCGAACAATACTCGGAGCCATTGACGAAGCTCCTG 253
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 181 AGGTCGATCACTGACATCCCTACATGCGAACAATACTCGGAGCCATTGTCGAAGCTGCTA 240
Query 254 ACCTCATTGCCAAATGATGAAAAGGTTGTGCTCGTTGGTCACAGCTTTGGTGGCTTGAAC 313
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACCTCATTGCCAAATGATGAGAAGGTTGTGCTCGTTGGTCATAGCTTTGGTGGCTTGAAC 300
Query 314 TTAGCCATAGCCATGGAAAAGTTTCCCGAAAAAATCTCTGTCGCTGTATTCTTGACTGCT 373
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TTAGCCATAGCCATGGAAAAGTTTCCCGACAAAATCTCTGTCGCTGTATTCTTGACTGCT 360
Query 374 TTCATGCCGGACACCGAACACTCACCATCCTTCGTCTTGGACAAGTTTGGAAGCAACATG 433
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCATGCCCGACACCGAACACTCACCATCCTTCGTCTTGGACAAGTTTGGAAGCAACATG 420
Query 434 CCTCAAGAAGCATGGATGGGCACCGAATTCGAACCTTATGGTTCAGACAATTCCGGACTG 493
|| | |||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 421 CCACCAGAAGCATGGATGGGCACGGAATTCGAACCGTACGGTTCAGACAATTCTGGACTG 480
Query 494 AGTATGTTTTTTAGCCCTGACTTCATGAAGTTGGGTCTCTACCAGCTTTCTCCAGTTGAG 553
|||||||| ||||||| ||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 481 AGTATGTTCTTTAGCCATGAGTTCATGAAGGTCGGTCTCTACCAGCTTTCTCCAGTTGAG 540
Query 554 GATCTTGAACTGGGATTACTTTTAATGAGGCCAGGATCGTTATTTATTAACGATTTATCG 613
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 GATCTTGAACTGGGATTACTTTTAAAGAGGCCAGGATCGTTATTTATTAACGATTTATCG 600
Query 614 AAGATGAAAAACTTCTCGGATGAAGGATATGGGTCTGTTCCTCGAGTTTTCATAGTGTGT 673
|||||||| |||||||| |||||||||||||| ||||||||||||| ||||||||||||
Sbjct 601 AAGATGAAGAACTTCTCAGATGAAGGATATGGTTCTGTTCCTCGAGCTTTCATAGTGTGC 660
Query 674 AAAGAGGACAAAGCAATTCCAGAAGAACGCCAGAGATGGATGATTGATAATTTTCCGGTG 733
|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 661 AAAGAGGACAAAGCAATTCCAGAAGAACACCAAAGATGGATGATTGATAACTTTCCGGTG 720
Query 734 AATTTAGTGATGGAGATGGAGGAGACAGATCATATGCCAATGTTCTGCAAGCCTCAGCAA 793
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATTTAGTGATTGAAATGGAAGAGACAGATCATATGCCAATGTTCTGCAAGCCTCAGCAA 780
Query 794 CTCAGTGATTACTTCCTGAAAATCGCGGACAAATTC-GTTTAATCAAATCTTCATGAAAC 852
||| | ||| |||||||| ||||||| || ||||| |||||||||| ||||| |||||
Sbjct 781 CTCTGCGATCACTTCCTGGAAATCGCTGA-AAATTTTGTTTAATCAA-TCTTCTTGAAAA 838
Query 853 TGTATTGGATTTGATATAATAAAGGTTTGTTGCAAATGAAT 893
| |||||||||||||||||||| ||||||||||||||||||
Sbjct 839 TATATTGGATTTGATATAATAAGGGTTTGTTGCAAATGAAT 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5