BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23630.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320180 jgi|Araly1|320180|fgenesh1_pm.C_scaffold_4000237 2560 0.0
Ahg490933 jgi|Araly1|490933|fgenesh2_kg.7__366__AT4G37160.1 1184 0.0
Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230 172 6e-42
> Ahg320180 jgi|Araly1|320180|fgenesh1_pm.C_scaffold_4000237
Length=1626
Score = 2560 bits (1386), Expect = 0.0
Identities = 1547/1627 (95%), Gaps = 2/1627 (0%)
Strand=Plus/Plus
Query 7 ATGAAGCAGAAACATCTACTGCTTCTAGGATTCTTATTAGCTTATTGCTTCAGCTCTGTT 66
|||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1 ATGAAGCAGAAAAATCTCCTGCTTCTAGGGTTCTTATTGGCTTATTGCTTCAGCTCTGTT 60
Query 67 TTTGTGATAAACGCAGAGGACCCCTACCTTTTCTTCACTTGGACTGTTACTTATGGAACC 126
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 61 TTTGTGATAAACGCAGAGGACCCGTATCTTTTCTTCACTTGGACTGTTACTTATGGAACC 120
Query 127 AGATCGCCTTTAGGTGTTCCTCAACAGGTTATTCTTATTAATGGCCAGTTCCCTGGTCCT 186
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 121 AGATCTCCTTTAGGTGTTCCTCAACAGGTTATACTTATTAATGGCCAGTTTCCTGGTCCT 180
Query 187 CCAATTGAAGGTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAAGCTTGACGAA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAATTGAAGGTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAAGCTTGACGAA 240
Query 247 CCTTTCCTCATCACCTGGAACGGAATTAAACAGAGGAAGATGTCGTGGCAAGACGGTGTT 306
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CCTTTCCTCATCACCTGGAATGGAATTAAACAGAGGAGGATGTCGTGGCAAGACGGTGTT 300
Query 307 TTGGGAACAAACTGTCCGATCCAACCAAAATCGAGTTGGACTTACCATTTTCAACTTAAG 366
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTGGGAACAAACTGTCCGATCCAACCAAAATCGAATTGGACTTACCATTTTCAACTTAAA 360
Query 367 GACCAAATCGGTACTTATGCATACTTTGCTTCAACGTCGATGCATAGAGCAAGTGGTGCT 426
|||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 361 GACCAAATCGGTACTTATACATACTTTGCTTCCACGTCGATGCACAGAGCAAGTGGTGCT 420
Query 427 TTTGGTGCACTTAACGTTAACCAGAGGTCAGTCATCTTCGTTCCTTACCCTAAACCAGAC 486
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTGGTGGACTTAATGTTAACCAGAGGTCAGTCATCTTCGTTCCTTACCCTAAACCAGAC 480
Query 487 GCTGACTTCACTCTCCTCGTCAGTGATTGGTACAAGATGGGACATAAGGAACTGCAAAGG 546
||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 481 GCTGATTTCACTCTCCTCGTCGGTGATTGGTACAAGATGGGACACAAGGAACTGCGTAGG 540
Query 547 AGGCTCGACTCAAGTCGTGCTCTTCCTCCTCCGGATGGTCTTCTCATCAACGGTGCTTCT 606
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGCTCGACTCAGGTCGTGATCTTCCTCCTCCGGATGGTCTTCTCATCAACGGTGCTTCT 600
Query 607 AAAGGTTTAGTCTTTACCGGTCAACATGGCAAGATATATAGGTTTCGGATATCGAATGTT 666
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAGGTTTAGTCTTCACCGGGCAACATGGCAAGATATATAGGTTTCGGATATCGAATGTT 660
Query 667 GGGATATCGACATCGATTAACTTTAGGATACAAGGACACATGATGACTCTCGTCGAAGTA 726
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GGGATATCGACATCAATTAACTTTAGGATACAAGGACACATGATGACTCTCGTTGAAGTA 720
Query 727 GAAGGTTCTCACACTCTGCAAGAGGTCTATGAATCGCTTGACATACACGTTGGCCAGTCT 786
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 721 GAAGGCTCTCACACTCTACAAGAGGTCTATGAGTCACTTGACATACACGTTGGCCAGTCT 780
Query 787 GTGACCGTGTTGGTCACATTGAAGGCTCCAGTGAAGGACTACTTCATCGTGGCTTCAACT 846
||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 781 GTGACCGTGCTGGTCACATTGAAGGCTCCAGTGAAGGACTACTTTATTGTAGCTTCAACC 840
Query 847 CGGTTTACCAAACCTATACTAACCACCACAGGAATCCTCAGCTACCAAGGTTCCAAAATC 906
|| ||||||||||| | || || || |||||||||||||| |||||||| |||||||||
Sbjct 841 CGATTTACCAAACCGGTGCTGACTACTACAGGAATCCTCAGTTACCAAGGCTCCAAAATC 900
Query 907 AGACCATCACATCCCCTTCCCATTGGTCCTACTTACCATATCCATTGGTCCATGAAACAA 966
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 901 AGACCATCTCATCCCCTTCCCATTGGTCCTACTTACCATATTCACTGGTCCATGAAACAA 960
Query 967 GCAAGAACCATCAGGCTAAATTTGACGGCGAATGCAGCAAGGCCAAATCCACAAGGATCC 1026
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 GCAAGAACCATCAGGTTAAATTTGACGGCGAATGCAGCAAGACCAAATCCACAAGGATCC 1020
Query 1027 TTTCACTACGGTACTATACCGATAAATCGAACTTTTGTTTTAGCCAACGGAAGAGCCATG 1086
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1021 TTTCACTACGGTACCATACCGATAAATCGAACTTTTGTTTTAGCCAACGGAAGAGCGA-G 1079
Query 1087 -ATCAATGGGAAACTTCGGTACACAGTGAACCGTGTGTCCTACGTTAACCCAGCAACTCC 1145
||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1080 CATCAATGGGAAGCTTCGGTACACAGTAAACCGTGTGTCCTACGTTAACCCAACAACTCC 1139
Query 1146 ATTGAAATTAGCCGACTGGTTCAACATTCCCGGGGTGTTCAATTTCAAAACCATTATGAA 1205
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 1140 ATTGAAATTAGCCGACTGGTTCAACATTCCCGGGGTGTTCAATTTCAAGACGATTTTGAA 1199
Query 1206 CATTCCCACACCAGGACCCTCCATTCTCGGAACTTCGGTCTTTGATGTGGCTCTCCATGA 1265
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1200 CATTCCTACACCAGGACCCTCCATTCTCGGAACTTCGGTCTTTGACGTGGCTCTTCATGA 1259
Query 1266 GTACGTCGAATTCGTGTTCCAGAACAACGAGGGATCTATACAATCTTGGCACCTTGACGG 1325
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1260 GTACGTCGAGTTCGTGTTCCAGAACAACGAGACATCTATACAATCTTGGCACCTTGACGG 1319
Query 1326 CACTAGTGCATATGTTGTTGGATACGGGTCGGGCACATGGAACATGGCTAAGAGGAGAGG 1385
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1320 CACTAGTGCATATGTTGTTGGATACGGGTCGGGCACATGGAACATGGCCAACAGGAGGGG 1379
Query 1386 TTATAATTTGGTTGATGCTGTTTCAAGGCACACTTTTCAGGTTTATCCAATGTCGTGGAC 1445
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 TTACAATTTGGTTGATGCTGTTTCAAGGCACACTTTTCAGGTGTATCCAATGTCGTGGAC 1439
Query 1446 GAGCATATTGGTATCATTAGACAATAAGGGAATGTGGAATTTGAGGTCACAAATATGGTC 1505
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAGCATATTGGTATCACTAGACAATAAGGGAATGTGGAATTTGAGGTCACAAATATGGTC 1499
Query 1506 AAGGAGATACTTAGGACAAGAACTCTATGTTCGTGTATGGAACAACGAGAAGTCTCTTTA 1565
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1500 AAGGAGATACTTAGGACAAGAACTCTATGTTCGTGTATGGAACGACGAGAGGTCTCTTTA 1559
Query 1566 CACTGAATCCGAGCCTCCTGTTAATGTTCTCTTTTGCGGCAAGGCCAAACATCCCCGCTT 1625
||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 1560 CACTGAAGCCGAGCCTCCTGTTAATGCTCTCTTTTGCGGCAAAGCCAAACGTCCCCGCTT 1619
Query 1626 GATTTAG 1632
|||||||
Sbjct 1620 GATTTAG 1626
> Ahg490933 jgi|Araly1|490933|fgenesh2_kg.7__366__AT4G37160.1
Length=1627
Score = 1184 bits (641), Expect = 0.0
Identities = 1285/1592 (81%), Gaps = 60/1592 (4%)
Strand=Plus/Plus
Query 59 GCTCTGTTTTTGTGATAAACGCAGAGGACCCCTACCTTTTCTTCACTTGGACTGTTACTT 118
|||||||||| || | || ||||| ||||| || || |||| |||||||||||||||||
Sbjct 59 GCTCTGTTTTAGT--T-AATGCAGAAGACCCATATCTGTTCTACACTTGGACTGTTACTT 115
Query 119 ATGGAACCA-GATCGCCTTTAGGTGTTCCTCAACAGGTTATTCTTATTAATGGCCAGTTC 177
| || | || ||| ||| |||||||||||||| |||| |||||||| ||||| ||||||
Sbjct 116 ACGGCA-CACGATATCCTCTAGGTGTTCCTCAAGAGGTCATTCTTATCAATGGACAGTTC 174
Query 178 CCTGGTCCTCCAATTGAAG-GTGTAACAAACAATAATATCGTTGTTAATGTCATTAACAA 236
|||||||| | ||||||| | || |||||||| || || ||||||||| ||||||||||
Sbjct 175 CCTGGTCCAGCGATTGAAGCG-GTCACAAACAACAACATTGTTGTTAATCTCATTAACAA 233
Query 237 GCTTGACGAACCTTTCCTCATCACCTGGAACGGAATTAAACAGAGGAAGATGTCGTGGCA 296
||| ||||| || |||||||| |||||||| ||| | || ||||||| || ||||||||
Sbjct 234 GCTCGACGAGCCATTCCTCATTACCTGGAATGGAGTGAAGCAGAGGAGGACATCGTGGCA 293
Query 297 AGACGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAAATCGAGTTGGACTTACCATTT 356
||| || || ||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 294 AGATGGAGTATTGGGAACAAACTGTCCGATCCAACCAAACTCGAACTGGACTTACCAGTT 353
Query 357 TCAACTTAAGGACCAAATCGGTACTTATGCATACTTTGCTTCAACGTCGATGCATAGAGC 416
||||||||| || |||||||||||||| | ||||| ||||| ||||| |||||| ||||
Sbjct 354 TCAACTTAAAGATCAAATCGGTACTTACACTTACTTCGCTTCCACGTCAATGCATCGAGC 413
Query 417 AAGTGGTGCTTTTGGTGCACTTAACGTTAACCAGAG-GTCAGTCATCTTCGT-TCCTTAC 474
||||||||||||||||| || ||| |||||||||| | | || || | || ||||||
Sbjct 414 CAGTGGTGCTTTTGGTGCTCTCAACATTAACCAGAGAG-CTGTTAT-TACGACTCCTTAT 471
Query 475 CCTAA-ACCAGACGCTGACTTCACTCTCCTCGTCAGTGATTGGTAC--AAGATGGGAC-- 529
|| || ||| || | || ||||| ||||||||| ||| |||| | || || |||
Sbjct 472 CC-AACACCCGATGGAGATTTCACCCTCCTCGTCTCTGACTGGTTCTCAA-ATATGACCC 529
Query 530 ATAAGGAACT-GC-AAAGGAGGCTCGACTCAAG-TCGTGCTCTTCCTCCTCCGGATGGTC 586
| ||||| || || ||| | |||||||| || | || || |||||||| ||| |||| ||
Sbjct 530 ACAAGGA-CTTGCGAAAAG-GGCTCGACGCAGGCTC-TGTTCTTCCTCTTCCTGATGCTC 586
Query 587 TTCTCATCAACGGTG-CTTCTAAAGGTTTAGTCTTTACCGGTCAACATGGCAAGATATAT 645
|||||||||| || | || ||||||||||| |||||||||||||||| || || | ||||
Sbjct 587 TTCTCATCAATGGAGTCT-CTAAAGGTTTAATCTTTACCGGTCAACAAGGTAAAACATAT 645
Query 646 AGGTTTCGGATATCGAATGTTGGGATATCGACATCGATTAACTTTAGGATACAAGGA-CA 704
| ||| ||| |||||||||| || ||| |||||||||| || |||||||| ||| | ||
Sbjct 646 AAGTTCCGGGTATCGAATGTCGGTATAGCGACATCGATAAATTTTAGGATTCAAA-ATCA 704
Query 705 CATGATGA-CTCTCGTCGAAGTAGAAGGTTCTCACACTCTGCAAGAG-GTCTATGAATCG 762
|| |||| | ||| | ||||||||||| |||||||||| || ||| | |||||| |||
Sbjct 705 CACAATGAGC-CTCATTGAAGTAGAAGGCGCTCACACTCTTCAGGAGAG-CTATGAGTCG 762
Query 763 CTTGACATACACGTTGGCCAGTCTGTGACCGTGTTGGTCACATTGAAGGCTCCAGTGAAG 822
|||||| | |||||||| ||||| ||||||| ||||||| || || ||| | |||| |
Sbjct 763 CTTGACGTCCACGTTGGTCAGTCCATGACCGTCCTGGTCACTTTAAAAGCTTCTGTGAGG 822
Query 823 GACTACTTCATCGTGGCTTCAACTCGGTTTACCAAACCTATACTAACCACCACAG-GAAT 881
||||| ||||||||||| ||||| |||||||| ||||| |||||||||| || | || |
Sbjct 823 GACTATTTCATCGTGGCCTCAACCCGGTTTACTAAACCGGTACTAACCACAACCGCGAGT 882
Query 882 CCTCAGCTACCAAGGTTCCAAAATCAGACCATCACAT---CCCCTTCCCATTGGTCCTAC 938
| || | |||||||| ||||||| | | | || || ||||| ||||||||||||||
Sbjct 883 C-TCCGTTACCAAGGCTCCAAAAAC-G-CTG-CATATGGGCCCCTCCCCATTGGTCCTAC 938
Query 939 TTACCATATCCATTGGTCCATGAAACAAGCAAGAACCATCAGGCTAAATTTGACGGCGAA 998
|||||||||||||||||| |||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 939 TTACCATATCCATTGGTCTATGAAACAAGCAAGAACCATAAGGATGAATTTGACGGCAAA 998
Query 999 TGCAGCAAGGCCAAATCCACAAGGATCCTTTCACTACGGTACTATACCGATAAATCGAAC 1058
||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 999 TGCTGCAAGGCCAAACCCACAAGGATCATTTCATTACGGGACTATACCGATAAACCGAAC 1058
Query 1059 TTTTGTTTTAGCCAACGGAAGAGCCA--T-GATCAATGGGAAACTTCGGTACACAGTGAA 1115
| | || ||||||| | | |||| | |||| | ||||||||||||||||| || ||
Sbjct 1059 TATAGTCCTAGCCAATGC--G-GCCACATTGATCTACGGGAAACTTCGGTACACGGTAAA 1115
Query 1116 CCGTGTGTCCTACGTTAACCCAGCAACTCCATTGAAATTAGCCGACTGGT-TCAACATTC 1174
||| | || ||| | |||||| |||| ||||||||| | ||||| |||| | ||||||
Sbjct 1116 CCGAATATCATACATCAACCCAACAACACCATTGAAACTCGCCGATTGGTAT-AACATTT 1174
Query 1175 CCGGG-GTGTTCAATTTCAAAACCATTATGAACATTCCCACA-CCAGGACCCTC-CATTC 1231
| ||| |||||| ||||||| || || || | || ||| ||| || |||||| | ||||
Sbjct 1175 C-GGGCGTGTTCGATTTCAAGACAATCATTAGCACTCCAACAACC-GGACCCGCTCATTT 1232
Query 1232 TCGGAACTTCGGTCTTTGAT-GTGGCTCTCCATGAGTACGTCGAATTCGTGTTCCAGAAC 1290
| || || ||||| | | | || | || ||||||| ||||||| |||| ||||| |||
Sbjct 1233 T-GGTACATCGGT-TATCAACGTTGAACTTCATGAGTTCGTCGAAATCGTTTTCCAAAAC 1290
Query 1291 AACGAGGGATCTATACAATCTTGGCACCTTGACGGCACTAGTGCATATGTTGTTGGATAC 1350
|||| |||| || |||||||||||| | ||||| ||||| || |||| ||| ||||||
Sbjct 1291 GACGAAAGATCAATTCAATCTTGGCACATGGACGGTACTAGCGCCTATGCTGTCGGATAC 1350
Query 1351 GGGTCGGGCACATGGAACATGGCTAAGAGGAGAGGTTATAATTTGGTTGATGCTGTTTCA 1410
|| || || |||||||| || | | ||||| | |||| || ||||||||||||||| ||
Sbjct 1351 GGATCAGGAACATGGAATGTGACCATGAGGAAACGTTACAACTTGGTTGATGCTGTTCCA 1410
Query 1411 AGGCACACTTTTCAGGTTTATCCAATGTCGTGGACGAGCATATTGGTATCATTAGACAAT 1470
|| |||||||||||||| ||||| | |||||||| ||||||||||| |||||||| ||
Sbjct 1411 AGACACACTTTTCAGGTGTATCCGTTATCGTGGACAAGCATATTGGTGTCATTAGATAAC 1470
Query 1471 AAGGGAATGTGGAAT-TTGAGGTCACAAATATGGTCAAGGAGATACTTAGGACAAGAACT 1529
|| |||||||||||| || |||||||||||||||| ||||| || ||||||||||| ||
Sbjct 1471 AAAGGAATGTGGAATCTT-AGGTCACAAATATGGTTGAGGAGGTATTTAGGACAAGAGCT 1529
Query 1530 CTATGTTCGTGTATGGAACAACGAGAAGTCTCTTTACACTGAATCCGAGCCTCCTGTTAA 1589
||||||||||| |||||| | |||||||||| ||||||||| | || || ||| ||||
Sbjct 1530 TTATGTTCGTGTTTGGAACGATGAGAAGTCTCCCTACACTGAAGCTGAACCGCCTCTTAA 1589
Query 1590 TGTTCTCTT-TTGCGGCAAGGCCAAACATCCC 1620
| ||| || ||||||||| ||||||| ||||
Sbjct 1590 CGCTCT-TTATTGCGGCAAAGCCAAACGTCCC 1620
> Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230
Length=1632
Score = 172 bits (93), Expect = 6e-42
Identities = 188/234 (80%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 102 CACTTGGACTGTTACTTATGGAACCAGATCGCCT-TTAGGTGTTCCTCAACAGGTTATTC 160
||| |||||||| |||||||| | | || ||| || ||||||||||||||||||||||
Sbjct 108 CACCTGGACTGTAACTTATGGCATTATCTCTCCTCTT-GGTGTTCCTCAACAGGTTATTC 166
Query 161 TTATTAATGGCCAGTTCCCTGGTCCTCCAA--TTGAAGGTGTAACAAACAATAATATCGT 218
| || ||||| ||||| |||||| | | || |||| | ||| || || | || ||| |
Sbjct 167 TCATCAATGGTCAGTTTCCTGGT-C-CAAAGCTTGATGTTGTGACCAATGACAACATCAT 224
Query 219 TGTTAATGTCATTAACAAGCTTGACGAACCTTTCCTCATCACCTGGAACGGAATTAAACA 278
| || |||| ||||| |||||| | ||||||||| | |||||||| || ||||| ||
Sbjct 225 CCTCAACCTCATCAACAAACTTGACCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCA 284
Query 279 GAGGAAGATGTCGTGGCAAGACGGTGTTTTGGGAACAAACTGTCCGATCCAACC 332
|||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 285 GAGGAAGAACTCATGGCAAGATGGTGTTTTGGGAACAAACTGTCCGATCCAACC 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5