BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23640.1
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343922 jgi|Araly1|343922|fgenesh1_pg.C_scaffold_4000264 926 0.0
> Ahg343922 jgi|Araly1|343922|fgenesh1_pg.C_scaffold_4000264
Length=621
Score = 926 bits (501), Expect = 0.0
Identities = 584/624 (94%), Gaps = 6/624 (1%)
Strand=Plus/Plus
Query 1 ATGGCCAACGACGTGACCAAAGATCCAACACCCAAATCTGACATTGTGGAGGATATTTA- 59
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||
Sbjct 1 ATGGCCAACGACGTGACCAAAGATCCATCACCCAAATCTGATATTGTCGAGGATA-TTAT 59
Query 60 CTTATGGAGGAGGAAGAAACTGGCCTTCTCTACACTCCT-GGTCTCAACATCGACATGGA 118
|||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 60 CTTATGGAGGAGGAAGAAACTGGCCTTCTCTATACT-CTCGGTCTCAACATCGACATGGA 118
Query 119 TTTTACTTAGCTTTTATGGTTTCACTACCATAACCATTGTATCTTGGATCGGCATCGCAG 178
||||||| | |||||||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 119 TTTTACTCAACTTTTATGGTTTCACTACCATAACCATTATATCGTGGATCGGCATCGCCG 178
Query 179 TCGTCTCTATGATTTTCCTCTGGGGGAGTTTACTTCGCCTTCTCAGCAAGGTCGAACCGG 238
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 179 TCGTCTCTATGGTTTTCCTCTGGGGGAGTTTACTTCGCCTTCTCAGCAAAGTAGAACCGG 238
Query 239 AACTATCAGGATTAGAAGTATCGGAGGAGTTTGTAGTGGAGACAGTGAGGTCTTGTCGGA 298
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AATTATCAGGGTTAGAAGTGTCGGAGGAGTTTGTAGTGGAGACAGTGAGGTCTTGTCGGA 298
Query 299 TGCTAATGGAAGAAATGGTTAGATGGATGTTTCGAGTCGGTGCTGAGAGTGAATGGTTTG 358
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 TGCTAATGGAAGAAACGGTTAGATGGATGTTTCGAGTTGGTGCTGAGAGTGAATGGTTTG 358
Query 359 TTTTCGCGAGAACCGTTTTAGGTTTTTGGATCTTGTCAAGAATTGGGAACCTTCTCGATT 418
|| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 359 TTCTCGCGAGAACCGTTTTGGGTTTCTGGGTCTTGTCAAGAATTGGGAACCTTCTTGATT 418
Query 419 TCCATACTTGTCTCTTCATCGGTTTGGTGATGGGGTTGACGGTTCCAAAGTTGTGGGA-A 477
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 419 TCCATACTTGTCTCTTCATCGGTTTGGTGATGGGCTTGACAGTTCCAAAGTTGTGGGACA 478
Query 478 GAGTACGGAGATCAAATACAGAAGCATTTGGGTAGCCTTAAAGATAAATCGAAGGGAGCG 537
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 479 -AGTACGGAGATCAAATACAGAAGCAATTGGGTAGTCTTAAAGATAAATCGAAGGGAGCG 537
Query 538 TATAATACAACTCATGAGAAGATTTTGGAAATGAAGAATAAGTTACACCATGGTACAGAA 597
|||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||
Sbjct 538 TATAATACAACTCATGAGAAGATTTTACTGATGAAGAACAAGTTACAACATGGTAGAGAA 597
Query 598 GAGAAAGTGAAAAAATCAGAGTAG 621
||||||| ||||||||||||||||
Sbjct 598 GAGAAAGAGAAAAAATCAGAGTAG 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25237371054
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5