BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23660.1
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932364 jgi|Araly1|932364|scaffold_400352.1 1469 0.0
> Ahg932364 jgi|Araly1|932364|scaffold_400352.1
Length=976
Score = 1469 bits (795), Expect = 0.0
Identities = 890/937 (95%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 162 ATGGCTTCAACACCTTGTGCAGCATGTAAGCTCTTGAGGCGTAAATGCACTCAAGAATGT 221
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCTTCAACGCCTTGTGCAGCATGCAAGCTCTTGAGGCGTAAATGCACTCAAGAATGT 80
Query 222 GTGTTTGCGCCGTATTTTCCACCAACTAATCCTCAAAAGTTTATCTTTGTTCACCGAGTT 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GTGTTTGCGCCGTATTTTCCACCAACTAATCCTCAAAAGTTTATCTTTGTTCACCGAGTC 140
Query 282 TTTGGAGCAAGCAATGTAACCAAGATCCTCAACGATCTTCCACCTGATCAACGCGAAGAC 341
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 141 TTTGGAGCAAGCAATGTAACCAAGATCCTTAACGATCTCCCACCTGATCAACGCGAAGAC 200
Query 342 ACTGTTAATTCCCTCTTTTATGAAGCGGAAGCGCGTATCCGTGACCCAATCTATGGATGT 401
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 201 ACTGTTAATTCCCTCTTTTATGAAGCCGAAGCGCGTATCCGTGACCCAATCTATGGATGT 260
Query 402 GTTGGTCTCATTTCTTTTTTACAACAATACCTCAAGAAAATTCAACAAGATCTTCTCACT 461
||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 261 GTTGGTCTCATCTCTTTTTTACAACAATACCTCAAGAAAATCCAACAAGATCTTGTCACT 320
Query 462 GCTAAAGAAGAGCTTGTTGGTTACTTGGGACCCGATGCTGTGATTCCGCCGCCTTATCTT 521
|||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 321 GCTAAAGAAGAGCTCGCCGGTTACATGGGACCTGATGCTGTGATTCCGCCGCCTTATCTT 380
Query 522 CCTCCTATAGGTAACAATCCTCCTCCCAATTTCATGATGTCTATGGAAGGAATGCCACCA 581
||| || | |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 381 CCTGCTCTTGGTAACAATCCTCCACCAAATTTCATGATGTCTATGGAAGGAATGCCACCT 440
Query 582 GGAGTGATCCCTCAAGGAGAACCTTTGATGATACGCGAACCAAACATGTCTCAGCAACAT 641
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 441 GGAGTGATCCCTCAAGGAGAACCGTTGATGATACGTGAACCAAACTTGTCTCAGCAACAT 500
Query 642 CATCATCAACAACCGCAAGATGAGCAGTTGCAATTCATAGCTTCTGATGCACAGAGAATG 701
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 501 CATCAACATCAACCGCAAGACGAGCAGTTGCAATTCATAGCTTCTGATGCACAGAGAATG 560
Query 702 GCTGCAATGATGTTGGAGAGAGGAGATCAACAAGGGATGTTCAATGGTTACGGAATAGAC 761
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GCTGCAATGATGTTGGATAGAGGAGATCAACAAGGGATGTTCAATGGTTACGGAATAGAC 620
Query 762 AACAATGGTTCGGTTACAGCCACGGGTTTTAACCAAATGGATGTGAATGATCAAGGTGCT 821
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 621 AACAATGGTTCGGTTACAGCCACGGGTTTCAACCAAATGGATGTGAATGATCATGGCGCT 680
Query 822 GGTGGTTCGTTGTCTGGACCATCTCTTGCTTTAGGAAGCTTTGGTGATGCTTATCAGATG 881
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 681 AGTGGGTGGTTGTCTGGACCATCTCTTGCTTTAGGAAGCTTTGGTGATGCTTTTCAAATG 740
Query 882 GGTCAAGAGACAGAGCATGGTCATATCAACCATGATCAGCTTCAGACACAGCTTATGCTT 941
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GGTCAAGAGACAGAACATGGTCATATCAACCATGATCAGCTTCAGACACAGCTTATGCTT 800
Query 942 CAGCCTCCATTACAAGAAGGTCAAGAACAAACAGAGGAAGGACAGTT-CTTGATGCAACC 1000
||||||||| |||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 801 CAGCCTCCACTACAAGAAGGTCAAGAGCAAACAGAGGAAGGACAGTTTCT-GATGCAACC 859
Query 1001 AATGGGACAAGAGAATCTTCATGACGAAGAGGAGGAGGAAGAGCTTGAGCCACCGGTTAA 1060
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||
Sbjct 860 AATGGGACAAGAGAATCTCCATGAAGAAGAGGAAGAGGAAGAGCTTGAGCCACCGATTAA 919
Query 1061 ATGGAGGATGTCTGAGAACAAGGAAGCTAGTTTTTAA 1097
|||||||| |||||||| |||||||||||||| ||||
Sbjct 920 ATGGAGGAAGTCTGAGAGCAAGGAAGCTAGTTATTAA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40867767024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5