BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23680.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932366 jgi|Araly1|932366|scaffold_400354.1 778 0.0
> Ahg932366 jgi|Araly1|932366|scaffold_400354.1
Length=610
Score = 778 bits (421), Expect = 0.0
Identities = 552/615 (90%), Gaps = 10/615 (2%)
Strand=Plus/Plus
Query 60 CTTTTAGTTCATATTGAAAAATGGAAAAT-ATTGAGTATCTGAATGAGATCCAAGCCGTT 118
|||||| || |||||| ||||| | |||| ||||||| |||||||||| ||||||||| |
Sbjct 1 CTTTTATTTTATATTGTAAAAT-GCAAATGATTGAGTTTCTGAATGAGGTCCAAGCCGCT 59
Query 119 GCGGGGAAGCTAATCCACAGCTATGGAGTCCCAGTTATGATCACGTTGTTCCTAAGATGG 178
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 60 GCAGGGAAGCTAATCCACAGCTATGGAGTCCCAGTTATGGTCATGTTGTTCCTAAGATGG 119
Query 179 CTCGCGTCCATCGTTGCAGTTTTTCTTATGATATTGGATCAAACGAAATGGAAGTACTCA 238
|| ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 120 GTCACGTCCTTCGTTGCAGTTTTTCTGATGATATTGGATCGAACGAAATGGAAGTACTCA 179
Query 239 AACAATATAATGGCTTCACTATTAGCTCCTTACCTCTTCTCTAGCCTTCCTATTGTTATT 298
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACAACATAATGACTTCACTATTAGCTCCTTACCTCTTCTCTAGCCTTCCTATTGTTATT 239
Query 299 TTTCAGGTCTTGAGGAACGGGGTTGGGAAATGGATCGCTCTCCTCACCGTTATTCTCAGG 358
|| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||| ||||||||
Sbjct 240 TTCCAGTTCTTGAGGACCGGGTTTGGGAAATGGATCGCTCTGCTCACAGTTGTTCTCAGG 299
Query 359 CtttttttACCAAACCATTTTCATGAATCGCTAGAGATCCCGGGTGCTACAATTCTTCTT 418
|||||||||||||||||||||| |||||||||||| ||||| |||| || |||||||||
Sbjct 300 CTTTTTTTACCAAACCATTTTCCTGAATCGCTAGATATCCCAAGTGCAACGATTCTTCTT 359
Query 419 ATTGTGGTTACACCGAGTGA-CATAGGGGCAAT-ATTCAGAGACGACCTGAGATATACGG 476
||||||| |||||| | ||| | ||| || || |||||||||||||||||||||||| |
Sbjct 360 ATTGTGGCTACACCAAATGAAC-TAGTGG-AAGCATTCAGAGACGACCTGAGATATACCG 417
Query 477 GAGGT-GATGTGTGCCTTCTCACGAGCTTTTACCTTATCAATAAACACACTAAAGCTTGT 535
||||| | |||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 418 GAGGTAG-TGTGTGCCTTTTCACGAGCTTTTACCTTCTCGATAAACACACTAAAGCTTGT 476
Query 536 GGTGGTATCAAAAACTCATTCACTCAAAAGGACAAAGTCACTTACAGCATTTGT-TTGTG 594
|||||| ||||||| ||||||||| ||||||||||| ||||||||| ||||||| || |
Sbjct 477 GGTGGTTTCAAAAAGTCATTCACTGAAAAGGACAAAATCACTTACACCATTTGTCTTTTT 536
Query 595 GATTCTGTTTGTCTACCCTATTTTGTCCTCATTTGCTGCCCTCTTCTACTTATAAGAACG 654
||||| | ||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 537 -ATTCTCTCTGTCTACCCTATTTTGTCCGCATTTGATTTCCTCTTCTACTTATAAGAACC 595
Query 655 CAACGATCTTGCTGA 669
|||||||||||||||
Sbjct 596 CAACGATCTTGCTGA 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5