BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23690.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932367 jgi|Araly1|932367|scaffold_400355.1 817 0.0
> Ahg932367 jgi|Araly1|932367|scaffold_400355.1
Length=533
Score = 817 bits (442), Expect = 0.0
Identities = 504/534 (94%), Gaps = 3/534 (1%)
Strand=Plus/Plus
Query 46 ATTGAGTCAAACC-AAACCAATGGGTATATGCAGCTCGTACGAGTCGACACAAGTCGCAA 104
||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 1 ATTGAGTCAAACCAAAACCAATGGGTATATGTAGCTCGTACGACTCGACACAAGTCGCGA 60
Query 105 CGGCGAAGCTGATCTTACACGACGGAAGGATGATGGAGTTCACAAGTCCGGTCAAAGTTG 164
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 CGGCGAAGCTGATCTTACACGACGGAAGGATGATGGAGTTCACGAGTCCGGTCAAAGTTG 120
Query 165 GTTACGTGTTACAAAAGAATCCGATGTGTTTCATATGTAACTCCGATGATATGGACTTTG 224
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GTTATGTGTTACAGAAGAATCCGATGTGTTTCATTTGTAACTCCGATGATATGGACTTTG 180
Query 225 ACAACGTTGTATCCGCCATTAGCGCCGACGAGGAGTTTCAGCTTGGTCAACTGTACTTCG 284
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 181 ACAACGTTGTATCCGCCATTAGCGCCGACGAGGAGTTTCAGCTTGGTCAGCTTTACTTTG 240
Query 285 CTCTTCCTTTAAGTTCGCTTCATCATTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCTG 344
|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 241 CTCTTCCTCTAAGCTCGCTTCATCAGTCTCTTAAAGCCGAGGAAATGGCTGCATTGGCCG 300
Query 345 TTAAAGCTAGCTCTGCTCTTATGAGAAGTGGTGGTTCATGTGGCCGAGATAAATGTCGGT 404
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 301 TTAAAGCTAGCTCTGCTCTAATGAGAAGTGGTGGTTCTTGTGGCCGAGATAAATGTAGGT 360
Query 405 GTCGTCGGAAATGTGT-GTCTCCGGTGATCTTTTCTGCTCGAAGAGTGGCGGCGGTGGGA 463
|||| ||||||||||| | |||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 361 GTCGCCGGAAATGTGTAG-CTCCGGTGATATTTTCTGCTCGGAGAGTAGCGGCGGTGGGA 419
Query 464 GCTAATGGAGAGACAAGGAATGGGAAAAGACGCGGTGGTGGTGGTAGCGGGAGGAGGAAG 523
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 420 TCTAATGGAGAGACGAGGAACGGGAAAAGACGCGGTGGCGGTGGTAGCGGGAGGAGGAAG 479
Query 524 TATGCGGCGAAGTTGAGTAAGATAGAAGAATGAAGGGTAGTTTGGTGATTTAGT 577
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 480 TATGCGGCGAAGTTGAGTAAGATTGAAGAGTGAAGGGTAGTTTGGTGATTTAGT 533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5