BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23700.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value Ahg481234 jgi|Araly1|481234|fgenesh2_kg.4__294__AT2G23700.1 3186 0.0 > Ahg481234 jgi|Araly1|481234|fgenesh2_kg.4__294__AT2G23700.1 Length=2467 Score = 3186 bits (1725), Expect = 0.0 Identities = 2011/2148 (94%), Gaps = 24/2148 (1%) Strand=Plus/Plus Query 375 TTCTTAGAGATGGGATTTGAAGACAAGAAAATGCTGAGACAGAGACATAAGCGTTCTAAG 434 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 329 TTCTTAGAGATGGGATTTGAAGACAAGAAAATGCAGAGACAGAGACATAAGCGTTCAAAG 388 Query 435 AGCTGTACTGT-TCCTGAGAAGAAAAAGCTTGAAGATGAGAATAGCATTGATTCTTCTCT 493 || |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 389 AGTTGTACTGTGT-TTGAAAAGAAAAAGCTTGAAGATGAGAATAGCATTGATTCTTCTCT 447 Query 494 GGATGCTTCTCAACGCCTCAAGCTCGACTTACCTCGTTGCGGCGATAAATCTTTTGAAAT 553 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 448 GGATGCTTCTCAACGCCTCAAGCTCGACTTACCTCGTTGTTGCGATAAATCTGTTGAAAC 507 Query 554 GAAGAAGGATCTATCCCCTGATGTAAAATTCAAGAGCTCTCTGAAGCAAGAGATTCAAGA 613 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 508 AAAGAAGGATCTGTCCCCTGATGTAAAATTCAAGAGCTCTCTGAAGCAAGAGATTCAAGA 567 Query 614 GCTTGAGAAAAGATTACAGAACCAGTTTGATGTCCGTGGTGCGTTAGAGAAGGCATTAGG 673 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 568 GCTTGAGAAAAGATTACAGAACCAGTTCGATGTCCGGGGTGCGTTAGAGAAGGCATTAGG 627 Query 674 CTATAAAACACCATCTCGAGACATCAAAGGCGACTCTACTCCAAAGCCTCCAACAGAATT 733 ||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct 628 CTATAAAACGCCTTCTCAAGACATCAAAGCCGACTATACTCCAAAGCCTCCAACAGAATT 687 Query 734 GATCAAGGAAATCGCGGTGTTGGAGTTAGAAGTTTCTCATTTGGAACAGTACCTTCTATC 793 ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 688 GATCAAGGAAATCGCGGTGTTAGAGTTGGAAGTTTCACATTTGGAACAGTACCTTCTATC 747 Query 794 TTTGTATCGTAAAGCGTTTGATCAACAAACATCTTCTGTATCGCCACCAACATCGAAACA 853 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 748 TTTGTATCGTAAAGCATTTGATCAACAAACATCTTCTGTATCGCCACCAACATCGAAACA 807 Query 854 ACAAAGCTCGTGTTCACCTAAATCTACTCTTAGAGGAAAACGTCTAGACTTCTCAAGAAC 913 ||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||| Sbjct 808 ACAGAGCTCGAGTTCACCTAAATCTACTCTCAGAGGAAAACGTCTAGACTTTTCAAAAAC 867 Query 914 ACCTGAATCTCGGTGTTTCTCCTTTGACAACAGACTGAAGAGTCCACGTTTGGTAGAGAA 973 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 868 ACCTGAAACTCGGTGTTTCTCATTTGACAACAGACTGAAGAGTCCACGTTTGGTGGAGAA 927 Query 974 GGAGCTAGAGTCTCCTAACCTTAGATGTAGACAAGAAAGCTTAGCCACGCAACCTCGATG 1033 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 928 GGAGCTAGATTCTCCTAACCTTAGATGCAGACAAGAAAGCTTAGCCACGCAACCTCGATG 987 Query 1034 TTTCTCATTTGACAATAGACTGAAGGAACCTAGTTCTGCTGGTCGACAATGT-AATCAAG 1092 ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| Sbjct 988 TTTCTCATTTGACAATAGACTGAAGGAACCTGGTTCTGCTGGTCGACAAT-TCAATCAAG 1046 Query 1093 AAGTCTCAAGAATCGATTCTCGGAGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGGTT 1152 ||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||| || Sbjct 1047 AAGACGCAAGAATCAATTCTCAGTGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1106 Query 1153 CTGCTGCTCGGCATTTCAATCAAGAA-GACTCAAGAATCGATTCTCAGTGTGTCTCCTTT 1211 |||||||||| || |||||||||||| | |||| | | ||||||||| || ||||| | Sbjct 1107 CTGCTGCTCGACAATTCAATCAAGAAAG-CTCATTATTTGATTCTCAGAGTTTCTCCGCT 1165 Query 1212 GACAATAGAGTGAAGGAACCCG-TT-T-CTGGTGTTCGACAATTCGAT-CAAGAAAGCTC 1267 ||||||||| |||||||||||| || | ||| || ||| |||||| || ||||||| ||| Sbjct 1166 GACAATAGACTGAAGGAACCCGGTTCTACTGCTGCTCGGCAATTC-ATTCAAGAAAACTC 1224 Query 1268 AAGAATCGATTCTCGGTGTTTCTCTTTCGACAATAGACTGAAAGATCAATGTTTTATCGA 1327 || ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1225 AACAATTGATTCTAGGTGTTTCTCTTTTGACAATAGACTGAAAGATCAATGTTTTATGGA 1284 Query 1328 GAAGGAGGACATCGATTCATGTGTTCGTCGTTGCCAGTCCTCTCTTAATCAACGTTCCAC 1387 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 GAAGGAGGACATCGGTTCTTGTGTTCGTCGTTGCCAGTCCTCTCTTAATCAACGTTCCAC 1344 Query 1388 CTTCAATAACCGAATATCTCCACCAGAAGACTCGGTATTCGCGTGCCACTCCCAACCATT 1447 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1345 CTTCAATAACCGAATATCTCCACCAGAAGACTCGGTATTCACGTGCCACTCCCAACCATT 1404 Query 1448 GTCCATACATGAA-TACATACAAAATGGATCAAATGATGCAAGCCTTGCAGAACACATGG 1506 ||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1405 GTCTATACA-GAAATACATACAAAATGGATCAAATGCTGCAAGCCTTGCAGAACACATGG 1463 Query 1507 GAACTCGGATATCTGATCACATATTCATGACTCCAAACAAGTTATCAGAGGAAATGATCA 1566 ||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| | Sbjct 1464 GAACTCGAATATCCGATCACATATTTATGACTCCTAACAAGTTATCAGAGGAGATGATAA 1523 Query 1567 AGTGTGCATCAGCTATATATTCCAAGCTCGCTGATCCACCATCGATAAACCACGGTTTCT 1626 | |||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1524 AATGTGTATCGGCTATATACTCCAAGCTAGCTGATCCACCATCGATAAACCACGGTTTCT 1583 Query 1627 CATCCCCGAGTTCGTCTCCATCATCAACAAGCGAGTTTTCACCACAAGACCAGTATGATA 1686 ||||||| ||||| |||||||||||| ||||||||||||| || |||||||||||||||| Sbjct 1584 CATCCCCAAGTTCATCTCCATCATCAGCAAGCGAGTTTTCGCCTCAAGACCAGTATGATA 1643 Query 1687 TGTGGAGTCCAAGCTTCAGAAAAAACTCGTCTTTCGATGACCAGTTTGAATTCAGCGGAC 1746 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1644 TGTGGAGTCCAAGCTTCAGAAAAAACTCGTCTTTCGATGACCAATTTGAATTCAGTGGAC 1703 Query 1747 CTTATAGCTCAATGATCGAAGTGTCACACATTCATCGAAACCGTA--AAAG-ACGCGACC 1803 |||| ||||||||||| ||||||||||||||||||||||||| || |||| |||||||| Sbjct 1704 CTTACAGCTCAATGATTGAAGTGTCACACATTCATCGAAACCATAGGAAAGGACGCGACC 1763 Query 1804 TTGACCTGATGAATCGAAACTTCAGCTTACTTCTTAAGCAACTGGAAAGTGTTGATCCGA 1863 ||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| | Sbjct 1764 TTGACCTGATGAATCAAAACTTCAGCTTGCTTATTAAGCAACTGGAAAGTGTTGATCCAA 1823 Query 1864 GAAAACTGACTCATCAAGAGAAACTGGCGTTCTGGATTAACGTACATAACGCTCTTGTGA 1923 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1824 GAAAGCTGACTCATCAAGAGAAACTGGCGTTCTGGATTAACGTACATAACGCGCTTGTGA 1883 Query 1924 TGCATACATTTCTGGCAAATGGGATTCCACAGAACAATGGGAAGCGATTTTTACTACTCT 1983 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 1884 TGCATACATTTCTGGCAAGTGGGATTCCACAGAACAATGGGAAGCGGTTTTTACTACTCT 1943 Query 1984 CCAAGCCAGCTTACAAGATAGGAGGTCGCATGGTAAGCTTAGAAGCAATACAAAGTTATA 2043 |||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||| ||||| Sbjct 1944 CCAAGCCAGCTTACCAGATAGGAGGTCGCATGGTAAGCGTAGAAGCGATAGAAAATTATA 2003 Query 2044 TTCTTCGTATCAAGATGCCTCGTCCTGGCCAGTGGCTGAAGTTATTACTCATACCTAAAA 2103 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 2004 TTCTTCGTATCAAGATGCCTCGTCCTGGCCAGTGGCTGAAGTTATTACTCATTCC-AAAA 2062 Query 2104 AA-TTCAGAACCGGAGATG-AACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTT 2161 || || ||||||||||| | || ||||||||||||||||||| ||||| ||||||||||| Sbjct 2063 AAGTTAAGAACCGGAGACGTAA-ATCAAGAATATTCCCTCGAACATTCGGAGCCTCTCTT 2121 Query 2162 ATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGATTCGTGTTTTTACGCCCAA 2221 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2122 ATACTTTGCCCTTTGTTCAGGCAACCATTCTGACCCTGCGATTCGTGTTTATACGCCCAA 2181 Query 2222 GGGAATATACCAAGAGCTAGAAACCGCAAAGGAAGAGTACATCCGCGCAACGTTTGGAGT 2281 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 2182 GGGAATATACCAAGAGCTAGAAACCGCAAAGGAAGAGTACATTCGCGCAACGTTTGGGGT 2241 Query 2282 AAAGAAAG-ACCAGAAACTAGTCTTACCAAAGATCATTGAGTCTTTTAGCAAAGACTCAG 2340 || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2242 TAA-AAAGGACCAGAAACTAGTCTTACCAAAGATCATTGAGTCTTTTAGCAAAGACTCAG 2300 Query 2341 GTTT-AGGTCAAGCAGCATTGATGGAGATGATTCAAGAATGTCTCCCGGAAACAATGaaa 2399 |||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2301 GTTTGAG-TCAAGCAGCATTGATGGAGATGATTCAAGAATGTCTCCCGGAGACAATGAAG 2359 Query 2400 aaaaCCATAAAGAAACTTAACTCAGGGAGATCCCGAAAGAGCATTGTCGAATGGACGCCT 2459 ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 2360 AAAACCATAAAGAAACTTAACTCGGGGAGATCCCGAAAGAGCATTGTTGAATGGACGCCT 2419 Query 2460 CATAATTTCGTGTTTCGGTATTTGATAGCCAGAGAACTTGTTAGATGA 2507 |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2420 CATAGTTTCGTGTTTCGGTATTTGATAGCCAGAGAACTTGTTAGATGA 2467 Score = 411 bits (222), Expect = 2e-113 Identities = 279/305 (91%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 44 ACATCAAATCTTTGCTACATGTCTTTGGTCGTATCCGTATATATGTTCTTCTTCTAATTA 103 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 31 ACATCAAATCTTTGCTACATGTCTTTGGTCGTATCCGTATATATGTTCTTCTTCTTCTTA 90 Query 104 TTTTAGCAGAAAGaaaaaaaaC-TAATCGCTTTCATAAACTCA-GATTTGtttttttttt 161 || |||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 91 TTATAGCAGAAAGAAAAAAAAAATAATCGCTTTCATAAACTCAAGATTTGTTTTTT---- 146 Query 162 tCAATGGTAGAAGAAGACAAGTGTTCTTGGAGTTTAGTTTCTTCTTATGATTCATTCATA 221 ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 147 -CAATGGTGGAAGAAGACAAGTTTTCTTGGAGTTTAGTTTCTTCTTATGATTCATTCATA 205 Query 222 AATCCGAGGAAATATATCAAATCTGTTTCTTTCT-TT-CTCT-AAGTCAAAACCCAACTA 278 |||| |||||||| | |||||||||||||||||| || |||| ||||||||||||||||| Sbjct 206 AATCTGAGGAAATTTCTCAAATCTGTTTCTTTCTCTTTCTCTGAAGTCAAAACCCAACTA 265 Query 279 AGAGATTCTTCTTCTTCTTTCTTTGAGATCAGTTACAAAGTGAGCTTTGTTTTTAAGTTC 338 |||||||||||| |||| | ||||||||||||||||| |||||||||||| ||||||| Sbjct 266 AGAGATTCTTCTGGTTCTCTGTTTGAGATCAGTTACAATTTGAGCTTTGTTTCTAAGTTC 325 Query 339 TAATT 343 ||||| Sbjct 326 TAATT 330 Score = 235 bits (127), Expect = 1e-60 Identities = 172/194 (89%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 1117 GTTTCTCCTTTGACAATAGAGTGAAGGAACCCGGTTCTGCTGCTCGGCATTTCAATCAAG 1176 ||||||| |||||||||||| |||||||||| |||||||||| ||| || |||||||||| Sbjct 987 GTTTCTCATTTGACAATAGACTGAAGGAACCTGGTTCTGCTGGTCGACAATTCAATCAAG 1046 Query 1177 AAGACTCAAGAATCGATTCTCAGTGTGTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1236 ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1047 AAGACGCAAGAATCAATTCTCAGTGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1106 Query 1237 CTGGTGTTCGACAATTCGATCAAGAAAGCTCAAGAATCGATTCTCGGTGTTTCTCTT-TC 1295 ||| || |||||||||| |||||||||||||| | | ||||||| | ||||||| | Sbjct 1107 CTGCTGCTCGACAATTCAATCAAGAAAGCTCATTATTTGATTCTCAGAGTTTCTCCGCT- 1165 Query 1296 GACAATAGACTGAA 1309 |||||||||||||| Sbjct 1166 GACAATAGACTGAA 1179 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104214910320 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5