BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23700.1
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481234 jgi|Araly1|481234|fgenesh2_kg.4__294__AT2G23700.1 3186 0.0
> Ahg481234 jgi|Araly1|481234|fgenesh2_kg.4__294__AT2G23700.1
Length=2467
Score = 3186 bits (1725), Expect = 0.0
Identities = 2011/2148 (94%), Gaps = 24/2148 (1%)
Strand=Plus/Plus
Query 375 TTCTTAGAGATGGGATTTGAAGACAAGAAAATGCTGAGACAGAGACATAAGCGTTCTAAG 434
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 329 TTCTTAGAGATGGGATTTGAAGACAAGAAAATGCAGAGACAGAGACATAAGCGTTCAAAG 388
Query 435 AGCTGTACTGT-TCCTGAGAAGAAAAAGCTTGAAGATGAGAATAGCATTGATTCTTCTCT 493
|| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 389 AGTTGTACTGTGT-TTGAAAAGAAAAAGCTTGAAGATGAGAATAGCATTGATTCTTCTCT 447
Query 494 GGATGCTTCTCAACGCCTCAAGCTCGACTTACCTCGTTGCGGCGATAAATCTTTTGAAAT 553
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 448 GGATGCTTCTCAACGCCTCAAGCTCGACTTACCTCGTTGTTGCGATAAATCTGTTGAAAC 507
Query 554 GAAGAAGGATCTATCCCCTGATGTAAAATTCAAGAGCTCTCTGAAGCAAGAGATTCAAGA 613
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 AAAGAAGGATCTGTCCCCTGATGTAAAATTCAAGAGCTCTCTGAAGCAAGAGATTCAAGA 567
Query 614 GCTTGAGAAAAGATTACAGAACCAGTTTGATGTCCGTGGTGCGTTAGAGAAGGCATTAGG 673
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 568 GCTTGAGAAAAGATTACAGAACCAGTTCGATGTCCGGGGTGCGTTAGAGAAGGCATTAGG 627
Query 674 CTATAAAACACCATCTCGAGACATCAAAGGCGACTCTACTCCAAAGCCTCCAACAGAATT 733
||||||||| || |||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 628 CTATAAAACGCCTTCTCAAGACATCAAAGCCGACTATACTCCAAAGCCTCCAACAGAATT 687
Query 734 GATCAAGGAAATCGCGGTGTTGGAGTTAGAAGTTTCTCATTTGGAACAGTACCTTCTATC 793
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 688 GATCAAGGAAATCGCGGTGTTAGAGTTGGAAGTTTCACATTTGGAACAGTACCTTCTATC 747
Query 794 TTTGTATCGTAAAGCGTTTGATCAACAAACATCTTCTGTATCGCCACCAACATCGAAACA 853
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TTTGTATCGTAAAGCATTTGATCAACAAACATCTTCTGTATCGCCACCAACATCGAAACA 807
Query 854 ACAAAGCTCGTGTTCACCTAAATCTACTCTTAGAGGAAAACGTCTAGACTTCTCAAGAAC 913
||| |||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 808 ACAGAGCTCGAGTTCACCTAAATCTACTCTCAGAGGAAAACGTCTAGACTTTTCAAAAAC 867
Query 914 ACCTGAATCTCGGTGTTTCTCCTTTGACAACAGACTGAAGAGTCCACGTTTGGTAGAGAA 973
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 868 ACCTGAAACTCGGTGTTTCTCATTTGACAACAGACTGAAGAGTCCACGTTTGGTGGAGAA 927
Query 974 GGAGCTAGAGTCTCCTAACCTTAGATGTAGACAAGAAAGCTTAGCCACGCAACCTCGATG 1033
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 928 GGAGCTAGATTCTCCTAACCTTAGATGCAGACAAGAAAGCTTAGCCACGCAACCTCGATG 987
Query 1034 TTTCTCATTTGACAATAGACTGAAGGAACCTAGTTCTGCTGGTCGACAATGT-AATCAAG 1092
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 988 TTTCTCATTTGACAATAGACTGAAGGAACCTGGTTCTGCTGGTCGACAAT-TCAATCAAG 1046
Query 1093 AAGTCTCAAGAATCGATTCTCGGAGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGGTT 1152
||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 1047 AAGACGCAAGAATCAATTCTCAGTGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1106
Query 1153 CTGCTGCTCGGCATTTCAATCAAGAA-GACTCAAGAATCGATTCTCAGTGTGTCTCCTTT 1211
|||||||||| || |||||||||||| | |||| | | ||||||||| || ||||| |
Sbjct 1107 CTGCTGCTCGACAATTCAATCAAGAAAG-CTCATTATTTGATTCTCAGAGTTTCTCCGCT 1165
Query 1212 GACAATAGAGTGAAGGAACCCG-TT-T-CTGGTGTTCGACAATTCGAT-CAAGAAAGCTC 1267
||||||||| |||||||||||| || | ||| || ||| |||||| || ||||||| |||
Sbjct 1166 GACAATAGACTGAAGGAACCCGGTTCTACTGCTGCTCGGCAATTC-ATTCAAGAAAACTC 1224
Query 1268 AAGAATCGATTCTCGGTGTTTCTCTTTCGACAATAGACTGAAAGATCAATGTTTTATCGA 1327
|| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1225 AACAATTGATTCTAGGTGTTTCTCTTTTGACAATAGACTGAAAGATCAATGTTTTATGGA 1284
Query 1328 GAAGGAGGACATCGATTCATGTGTTCGTCGTTGCCAGTCCTCTCTTAATCAACGTTCCAC 1387
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 GAAGGAGGACATCGGTTCTTGTGTTCGTCGTTGCCAGTCCTCTCTTAATCAACGTTCCAC 1344
Query 1388 CTTCAATAACCGAATATCTCCACCAGAAGACTCGGTATTCGCGTGCCACTCCCAACCATT 1447
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1345 CTTCAATAACCGAATATCTCCACCAGAAGACTCGGTATTCACGTGCCACTCCCAACCATT 1404
Query 1448 GTCCATACATGAA-TACATACAAAATGGATCAAATGATGCAAGCCTTGCAGAACACATGG 1506
||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1405 GTCTATACA-GAAATACATACAAAATGGATCAAATGCTGCAAGCCTTGCAGAACACATGG 1463
Query 1507 GAACTCGGATATCTGATCACATATTCATGACTCCAAACAAGTTATCAGAGGAAATGATCA 1566
||||||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 1464 GAACTCGAATATCCGATCACATATTTATGACTCCTAACAAGTTATCAGAGGAGATGATAA 1523
Query 1567 AGTGTGCATCAGCTATATATTCCAAGCTCGCTGATCCACCATCGATAAACCACGGTTTCT 1626
| |||| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1524 AATGTGTATCGGCTATATACTCCAAGCTAGCTGATCCACCATCGATAAACCACGGTTTCT 1583
Query 1627 CATCCCCGAGTTCGTCTCCATCATCAACAAGCGAGTTTTCACCACAAGACCAGTATGATA 1686
||||||| ||||| |||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 1584 CATCCCCAAGTTCATCTCCATCATCAGCAAGCGAGTTTTCGCCTCAAGACCAGTATGATA 1643
Query 1687 TGTGGAGTCCAAGCTTCAGAAAAAACTCGTCTTTCGATGACCAGTTTGAATTCAGCGGAC 1746
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1644 TGTGGAGTCCAAGCTTCAGAAAAAACTCGTCTTTCGATGACCAATTTGAATTCAGTGGAC 1703
Query 1747 CTTATAGCTCAATGATCGAAGTGTCACACATTCATCGAAACCGTA--AAAG-ACGCGACC 1803
|||| ||||||||||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1704 CTTACAGCTCAATGATTGAAGTGTCACACATTCATCGAAACCATAGGAAAGGACGCGACC 1763
Query 1804 TTGACCTGATGAATCGAAACTTCAGCTTACTTCTTAAGCAACTGGAAAGTGTTGATCCGA 1863
||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 1764 TTGACCTGATGAATCAAAACTTCAGCTTGCTTATTAAGCAACTGGAAAGTGTTGATCCAA 1823
Query 1864 GAAAACTGACTCATCAAGAGAAACTGGCGTTCTGGATTAACGTACATAACGCTCTTGTGA 1923
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1824 GAAAGCTGACTCATCAAGAGAAACTGGCGTTCTGGATTAACGTACATAACGCGCTTGTGA 1883
Query 1924 TGCATACATTTCTGGCAAATGGGATTCCACAGAACAATGGGAAGCGATTTTTACTACTCT 1983
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1884 TGCATACATTTCTGGCAAGTGGGATTCCACAGAACAATGGGAAGCGGTTTTTACTACTCT 1943
Query 1984 CCAAGCCAGCTTACAAGATAGGAGGTCGCATGGTAAGCTTAGAAGCAATACAAAGTTATA 2043
|||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||| |||||
Sbjct 1944 CCAAGCCAGCTTACCAGATAGGAGGTCGCATGGTAAGCGTAGAAGCGATAGAAAATTATA 2003
Query 2044 TTCTTCGTATCAAGATGCCTCGTCCTGGCCAGTGGCTGAAGTTATTACTCATACCTAAAA 2103
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2004 TTCTTCGTATCAAGATGCCTCGTCCTGGCCAGTGGCTGAAGTTATTACTCATTCC-AAAA 2062
Query 2104 AA-TTCAGAACCGGAGATG-AACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTT 2161
|| || ||||||||||| | || ||||||||||||||||||| ||||| |||||||||||
Sbjct 2063 AAGTTAAGAACCGGAGACGTAA-ATCAAGAATATTCCCTCGAACATTCGGAGCCTCTCTT 2121
Query 2162 ATACTTTGCACTTTGTTCAGGCAACCATTCTGACCCTGCGATTCGTGTTTTTACGCCCAA 2221
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2122 ATACTTTGCCCTTTGTTCAGGCAACCATTCTGACCCTGCGATTCGTGTTTATACGCCCAA 2181
Query 2222 GGGAATATACCAAGAGCTAGAAACCGCAAAGGAAGAGTACATCCGCGCAACGTTTGGAGT 2281
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2182 GGGAATATACCAAGAGCTAGAAACCGCAAAGGAAGAGTACATTCGCGCAACGTTTGGGGT 2241
Query 2282 AAAGAAAG-ACCAGAAACTAGTCTTACCAAAGATCATTGAGTCTTTTAGCAAAGACTCAG 2340
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2242 TAA-AAAGGACCAGAAACTAGTCTTACCAAAGATCATTGAGTCTTTTAGCAAAGACTCAG 2300
Query 2341 GTTT-AGGTCAAGCAGCATTGATGGAGATGATTCAAGAATGTCTCCCGGAAACAATGaaa 2399
|||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2301 GTTTGAG-TCAAGCAGCATTGATGGAGATGATTCAAGAATGTCTCCCGGAGACAATGAAG 2359
Query 2400 aaaaCCATAAAGAAACTTAACTCAGGGAGATCCCGAAAGAGCATTGTCGAATGGACGCCT 2459
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2360 AAAACCATAAAGAAACTTAACTCGGGGAGATCCCGAAAGAGCATTGTTGAATGGACGCCT 2419
Query 2460 CATAATTTCGTGTTTCGGTATTTGATAGCCAGAGAACTTGTTAGATGA 2507
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2420 CATAGTTTCGTGTTTCGGTATTTGATAGCCAGAGAACTTGTTAGATGA 2467
Score = 411 bits (222), Expect = 2e-113
Identities = 279/305 (91%), Gaps = 10/305 (3%)
Strand=Plus/Plus
Query 44 ACATCAAATCTTTGCTACATGTCTTTGGTCGTATCCGTATATATGTTCTTCTTCTAATTA 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 31 ACATCAAATCTTTGCTACATGTCTTTGGTCGTATCCGTATATATGTTCTTCTTCTTCTTA 90
Query 104 TTTTAGCAGAAAGaaaaaaaaC-TAATCGCTTTCATAAACTCA-GATTTGtttttttttt 161
|| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 91 TTATAGCAGAAAGAAAAAAAAAATAATCGCTTTCATAAACTCAAGATTTGTTTTTT---- 146
Query 162 tCAATGGTAGAAGAAGACAAGTGTTCTTGGAGTTTAGTTTCTTCTTATGATTCATTCATA 221
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 147 -CAATGGTGGAAGAAGACAAGTTTTCTTGGAGTTTAGTTTCTTCTTATGATTCATTCATA 205
Query 222 AATCCGAGGAAATATATCAAATCTGTTTCTTTCT-TT-CTCT-AAGTCAAAACCCAACTA 278
|||| |||||||| | |||||||||||||||||| || |||| |||||||||||||||||
Sbjct 206 AATCTGAGGAAATTTCTCAAATCTGTTTCTTTCTCTTTCTCTGAAGTCAAAACCCAACTA 265
Query 279 AGAGATTCTTCTTCTTCTTTCTTTGAGATCAGTTACAAAGTGAGCTTTGTTTTTAAGTTC 338
|||||||||||| |||| | ||||||||||||||||| |||||||||||| |||||||
Sbjct 266 AGAGATTCTTCTGGTTCTCTGTTTGAGATCAGTTACAATTTGAGCTTTGTTTCTAAGTTC 325
Query 339 TAATT 343
|||||
Sbjct 326 TAATT 330
Score = 235 bits (127), Expect = 1e-60
Identities = 172/194 (89%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 1117 GTTTCTCCTTTGACAATAGAGTGAAGGAACCCGGTTCTGCTGCTCGGCATTTCAATCAAG 1176
||||||| |||||||||||| |||||||||| |||||||||| ||| || ||||||||||
Sbjct 987 GTTTCTCATTTGACAATAGACTGAAGGAACCTGGTTCTGCTGGTCGACAATTCAATCAAG 1046
Query 1177 AAGACTCAAGAATCGATTCTCAGTGTGTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1236
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1047 AAGACGCAAGAATCAATTCTCAGTGTTTCTCCTTTGACAATAGAGTGAAGGAACCCGTTT 1106
Query 1237 CTGGTGTTCGACAATTCGATCAAGAAAGCTCAAGAATCGATTCTCGGTGTTTCTCTT-TC 1295
||| || |||||||||| |||||||||||||| | | ||||||| | ||||||| |
Sbjct 1107 CTGCTGCTCGACAATTCAATCAAGAAAGCTCATTATTTGATTCTCAGAGTTTCTCCGCT- 1165
Query 1296 GACAATAGACTGAA 1309
||||||||||||||
Sbjct 1166 GACAATAGACTGAA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104214910320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5