BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23755.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343930 jgi|Araly1|343930|fgenesh1_pg.C_scaffold_4000272 549 1e-155
Ahg481235 jgi|Araly1|481235|fgenesh2_kg.4__295__AT2G23740.1 359 3e-98
> Ahg343930 jgi|Araly1|343930|fgenesh1_pg.C_scaffold_4000272
Length=459
Score = 549 bits (297), Expect = 1e-155
Identities = 416/469 (89%), Gaps = 26/469 (6%)
Strand=Plus/Plus
Query 45 ATGGCAAAACCCAGAAATCTTTTTAGGGTTTGCTCTCTTCTAATGGCGTTTTTATTTGCT 104
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGGCAAAACCCAGAAATCTTTTTAGGGTTTGTTCTCTTCTAATGGCGTTTTTGTTTGCT 60
Query 105 TACTCTGCTTCTGTCCAGCTTAATGATCCTGATTGGTACTTTTGGTTTCCACTGTACACA 164
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 TACTCTGCATCTGTCCAGCTTAATGATCCTGATTGGTACTTTTGGTTTCCTCTCTACACA 120
Query 165 CT-TGCTTGTGTAGTTAATCTAATAAACTACAGAAGAAG-A-ATC-AAA-CTA-ATG-AT 217
|| | |||||||| ||||||| ||||||| ||||||||| | ||| ||| | | | | ||
Sbjct 121 CTCT-CTTGTGTAATTAATCTGATAAACTGCAGAAGAAGAATATCTAAATCAAGAAGAAT 179
Query 218 ------GATGA---GAACAGCTCTTAGCTTGGGTGTGTTCTTGTTGGTTAAAGTTATTGC 268
|||| ||||||||||||| || ||| ||||||||||||||||||| |||
Sbjct 180 CAAACAAATGATTGGAACAGCTCTTAGTTTAGGTCTGTTCTTGTTGGTTAAAGTGGTTGT 239
Query 269 AGAGGATGTAATAACCGAGAAAGTTGGAGTCTTGTCTTTAGATCTTACTCATAGAGTTGT 328
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AGAAGATGTAATAACAGAGAAAGTTGGAGTCTTGTCTTTAGATCTTACTCATAGAGTGGT 299
Query 329 TAGAGAAAAGATTGGAAGTGGTTTAGTAATAGCTTCCATGGTTCTGCAACTACAAGCTTC 388
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 300 TAGAGAGAAGATTGGAAGTGGTTTAGTGATAGCTTCCATGGTTCTGCAACTACAA--T-C 356
Query 389 TTCTTCTTCTTCAAAAACCATTGACTTTGGGATGGTTGCAACTGTAATCTTTGGCTATGG 448
|||||| | ||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 357 TTCTTC------AGAAACCATTGACTTTGGGATGGTTGCAATTGTAGTCTTTGGTTATGG 410
Query 449 ACTTCCCTTTTGGTTTTTCACAATTGAGAAAGGAGAGATCAAGATTTGA 497
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 ACTTCCCTTTTGGTTTTTCACAATTGAGAAAGGAGAAATCAAGATTTGA 459
> Ahg481235 jgi|Araly1|481235|fgenesh2_kg.4__295__AT2G23740.1
Length=4535
Score = 359 bits (194), Expect = 3e-98
Identities = 229/245 (93%), Gaps = 6/245 (2%)
Strand=Plus/Minus
Query 515 aaaaGTTACAAGCTTGAAGGAAGATCAATAGTTCCAAAGGTGTCTAAAAGATTCAAGGGC 574
|||||| ||||||||||||||| || ||||||||||||| ||||| |||||||||||||
Sbjct 4507 AAAAGTCACAAGCTTGAAGGAAAATGAATAGTTCCAAAGCTGTCT-AAAGATTCAAGGG- 4450
Query 575 aaaaaa---aaaaaGTCTTGAAGGAAAATTATCAAAACAGATCTGCAAAGAATGTTCCTA 631
|||||| |||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 4449 AAAAAAGGTAAAAAGTC-TGAAGGAAAATTATTAAAACAAATCTGCAAAGAATGTTCCTA 4391
Query 632 AGAACCAAAATCTAACTTAAGAGACCTCTGCAATTAGTTGCTTTACAATGGCATGGATGC 691
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4390 GGAACCAAAATCTAACTTAAGAGACCTCTGCAATTAGTTGCTTTACAATGGCATGGATGC 4331
Query 692 TCATTTTCTTGTTCAGATGGTACCGGTCTGCGTCCATAGTCTCGGGTGATCTCTTCTCCT 751
|||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4330 TCATTTTCTTGTCCAGTTGGTACCGGTCTGCATCCATAGTCTCGGGTGATCTCTTCTCCT 4271
Query 752 GCAGC 756
|||||
Sbjct 4270 GCAGC 4266
Score = 171 bits (92), Expect = 1e-41
Identities = 97/99 (98%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 846 ACATCCATACTGGCGTATAGACCGATATGAGCGAGCGGGGACTCCATGCTTTCCACAATA 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4264 ACATCCATACTGGCGTATAGACCGATATGAGCGAGCGGGGACTCCATGCTTTCCACAATA 4205
Query 906 ACTTGGTGATTAACGAGATTTGGTGAGCAGCTAGAGATT 944
|||||||||||||||||||||||||||||||| | ||||
Sbjct 4204 ACTTGGTGATTAACGAGATTTGGTGAGCAGCT-GTGATT 4167
Score = 122 bits (66), Expect = 4e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 1014 CTGTGATTGATGAATCGAGAGATGTTGCCATGAGTAGTAGCATCAATAGCATAATCGAGC 1073
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4174 CTGTGATTGATGTATCGAGAGATGTTGCCATGAGTAGTAGCATCAATAGCATAATCGGGC 4115
Query 1074 TCTTCTTCCATC 1085
||||||||||||
Sbjct 4114 TCTTCTTCCATC 4103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5