BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23770.1
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481239 jgi|Araly1|481239|fgenesh2_kg.4__299__AT2G23770.1 2543 0.0
> Ahg481239 jgi|Araly1|481239|fgenesh2_kg.4__299__AT2G23770.1
Length=1836
Score = 2543 bits (1377), Expect = 0.0
Identities = 1676/1818 (92%), Gaps = 29/1818 (2%)
Strand=Plus/Plus
Query 38 TCCTAAGTCTCTCTTCCTTCGCAACAGCACAACAGCCTTATGTCGGAATATCAACAACTG 97
||||| || |||| || |||||||| || ||||||||||||||||| |||| ||||| |
Sbjct 32 TCCTATGTTTCTCCTCTTTCGCAACCGCGCAACAGCCTTATGTCGGGGTATCGACAACCG 91
Query 98 ATTGCTCTGTTTCCGACAACACAACCTCTGTTTTCGGCTACTCTTGTAATGGTCTCAACA 157
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 92 ATTGCTCTGTTTCCGACAACTCAACTTCTGTTTTCGGCTACTCTTGTAACGGTCTCAACA 151
Query 158 AAACTTGCCAAGCTTACGTCATTTTCCGATCTACTCCTTCTTTCTCCACCGTCACCTCAA 217
|||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||| |
Sbjct 152 AAACTTGCCAAGCTTATGTCATTTTCCGATCTACTCCTCCTTTCTCTACCGTCTCCTCCA 211
Query 218 TCTCTTCCCTCTTCTCTGTCGACCCATCTCTCGTCTCCTCCCTCAATGACGCTTCACCTT 277
|||||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||| |||
Sbjct 212 TCTCTTCCCTCTTCTCCGTCGACCCATCTCTCCTCTCCTCCCTCAATGCCGCCTCAACTT 271
Query 278 CAACTTCTTTCCCTTCTGGTCAACAAGTCATTATCCCTTTAACTTGTTCTTGCACCGGTG 337
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 272 CAACTTCATTCCCTTCCGGTCAACAAGTCATTATCCCTTTAACTTGTTCTTGCTTCGGCG 331
Query 338 ACGATTCACAATCCAATATTACATACACAATCCAACCAAACGATTCGTATTTCGCCATTG 397
|| |||||||| ||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 332 ACAATTCACAAGCCAATCTCACCTACACAATCCAACCAAACGATTCGTATTTCGCCATTG 391
Query 398 CTAACGACACTCTTCAGGGGCTTTCGACATGTCAAGCTTTGGCA-AAACAGAACAATGTT 456
|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 392 CTAACGACACTCTTCAGGGGCTTTCGACGTGTCAAGCTTTGG-AGAAACAGAACAATGTT 450
Query 457 TCTTCTCAATCTTTGTTTCCTGGTATGAGGATCGTTGTTCCGATCCGTTGTGCGTGTCCC 516
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 451 TCTTCTCAATCTTTGTTACCTGGTATGAGGATCGTTGTTCCGATCCGTTGCGCGTGTCCC 510
Query 517 ACGGCTAAACAGATCAACGAAGATGGCGTGAAGTATCTGATGAGTTATACTGTGGTTTTT 576
|||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 511 ACGGCTAAACAGGTCAACGAAGATGGGGTGAAGTATCTGATGAGCTATACGGTGGTTTTC 570
Query 577 GAAGACACTATCGCGATCATCAGCGATAGATTCGGGGTTGAGACGAGCAAGACTTTAAAA 636
|| |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| ||
Sbjct 571 GATGACACTGTCGCGATCATCAGCGAGAGATTTGGGGTCGAGACGAGCAAGACTTTAGAA 630
Query 637 GCTAACGAAATGTCTTTTGAGAATTCTGAAGTTTTCCCTTTCACAACAATCCTGATCCCT 696
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct 631 GCTAACGAAATGTCTTTTGAAAATTCTGAAGTTTTCCCTTTCACCACAATTCTGATTCCT 690
Query 697 TTGGTGAATCCTCCTGCAAATACTAActctctca-t--tcctcct---cct---cctcct 747
||| ||||||||||| | ||| | |||||| ||| | ||||||| ||| ||||||
Sbjct 691 TTGTTGAATCCTCCTTCGAATTCCAACTCTATCATTCCTCCTCCTCCCCCTCCCCCTCCT 750
Query 748 cctcct---ccacaatcggtttctcctcctccATTGTCGCCGGATGGTAGGAAATCGAAG 804
|||||| |||||||||| || | ||||||||||||||||| ||||||||||||| |||
Sbjct 751 CCTCCTCCGCCACAATCGG-TT-T-CTCCTCCATTGTCGCCGAATGGTAGGAAATCAAAG 807
Query 805 AAGAAAACATGGGTCTATGCTCTTGCCGGAGTACTAGGAGGAGCATTGGTTTTGAGTGTG 864
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AAGAAAACATGGGTCTATGTTCTTGCCGGAGTACTAGGAGGAGCATTGGTTTTGAGTGTG 867
Query 865 ATCGGTGCAGCCATATTTTGCC-TGTCTAAGAAGAAAACGAAAACGCAAACGCAAGAGGA 923
|| ||||||||||| ||||||| || ||||||||||||| |||| | | ||||||||
Sbjct 868 ATTGGTGCAGCCATCTTTTGCCTTG-GTAAGAAGAAAACG-AAAC-C--A--CAAGAGGA 920
Query 924 AACGGGAAACCTCGATAGCTTCATGGGCAAGAAACCACCGATGTCTGATCAAGAATTCGA 983
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 921 AAGGGGAAACCTCGATAGCTTCACGGGCAAGAAACCACCGATGTCCGATCAAGAATTCGA 980
Query 984 TCCGCTAGATGGTTTGTCAGGTATGGTGGTAGAATC-CTTAAAAGTTTACAAATTTCACG 1042
||| ||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 981 TCCACTAGATGGTTTATCAGGGATGGTGGTAGAATCAC-TAAAAGTTTACAAATTTCACG 1039
Query 1043 AGCTGCAATCAGCTACAAGCGATTTCACATCGTCTAGCTCGATTGGAGGATCAGGGTACA 1102
||||||| || || |||||| |||||||||||||||| || || ||||||||||||||||
Sbjct 1040 AGCTGCAGTCTGCAACAAGCAATTTCACATCGTCTAGTTCAATCGGAGGATCAGGGTACA 1099
Query 1103 TCGGAAAAATCAACGGCGATGGCGCAATGATCAAGAAAATCGAAGGAAACGCATCGGAGG 1162
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1100 TCGGAAAAATCAACGGCGATGGTGCAATGATCAAGAAAATCGAAGGAAACGCATCGGAGG 1159
Query 1163 AAGTCAACTTATTGTCTAAACTAAACCATCTTAACATCATCCGTCTCTCTGGATTCTGTT 1222
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1160 AAATCAACTTATTGTCGAAACTAAACCATCTCAACATCATCCGTCTCTCTGGATTCTGTC 1219
Query 1223 TCCATGAAGGAGATTGGTACTTAGTCTACGAACACGCTTCAAACGGAAGCTTAAGTGAAT 1282
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1220 TCCATGAAGGAGACTGGTACTTAGTCTACGAATACGCTTCAAACGGAAGCTTAAGTGAAT 1279
Query 1283 GGATCCACACGACGAAATCGTTAC-TAAGCTTGACACAAAAACTACAAATCGCTTTGGAT 1341
|||||||||||||||||||| | | ||| ||||||||| || ||||||||||||||||||
Sbjct 1280 GGATCCACACGACGAAATCGCT-CTTAAACTTGACACAGAAGCTACAAATCGCTTTGGAT 1338
Query 1342 ATAGCAACAGGGCTAAACTATCTACACAACTTCGCTGATCCTCCATACGTTCACAGAGAT 1401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ATAGCAACAGGGCTAAACTATCTACACAACTTCGCTGATCCTCCATACGTTCACAGAGAC 1398
Query 1402 TTGAACAGCAACAATGTGTTCCTCGACCTCGAGTTTCGAGCAAAGATTGGTAGTTTAGGT 1461
||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 1399 TTGAACAGCAACAATGTGTTCCTCGACATTGAGTTTCGAGCAAAGATTGGTAACTTAGGG 1458
Query 1462 TCAGCAAGATCAACGACTGAAGATTTCGTGTTGACCAAGCACGTGGAAGGAACAAGAGGG 1521
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1459 TCAGCAAGATCAACAACTGAAGATTTCGTGTTGACCAAGCATGTGGAAGGAACAAGAGGG 1518
Query 1522 TACTTAGCTCCGGAGTATTTGGAACATGGTTTAGTTTCAACTAAGCTTGATGTCTATGCT 1581
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 TACTTAGCTCCAGAGTATATGGAACATGGTTTAGTTTCAACTAAGCTTGATGTCTATGCT 1578
Query 1582 TTTGGAGTTGTCTTGTTGGAGATTGTTACTGGTAAAGAAGCTTCTGAATTGAAGAAAGAG 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 TTTGGAGTTGTCTTGTTGGAGATTGTTACTGGTAAAGAAGCTTCTGAATTGAAGAAAGAG 1638
Query 1642 ATCGATGAAGGTAAAGCTATTGATGAGATTTTGATTCATGGAAGATTGTTACCTGAAGGA 1701
|||||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1639 ATCGATGAAGGTAATGCGATTGACGAGATTTTGATTGGTGGAAGATTGTTACCTGAAGGA 1698
Query 1702 TTAACAAGTTTTGTTGAGAGATTAGTGGTGGATTGTTTAAAGAAAGATCATTTGAATCGT 1761
||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1699 TTAGTGAGTTTTGTTGTGAGATTGGTGGTGGATTGTTTGAAGAAAGATCATTTGAATCGT 1758
Query 1762 CCATCGATGGATGAAAATGTTATGTCTTTGTCTAAGATCTTGGCGGCTACGCAGAACTGG 1821
|||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 1759 CCATCGATGGATGAAATTGTTATGTCTTTGTCTAAGATCTTGACGGCTACACAAAACTGG 1818
Query 1822 GAAGAATCGTCGTACTAA 1839
|||||||| |||||||||
Sbjct 1819 GAAGAATCATCGTACTAA 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69057614185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5