BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23800.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932378 jgi|Araly1|932378|scaffold_400366.1 1788 0.0
> Ahg932378 jgi|Araly1|932378|scaffold_400366.1
Length=1161
Score = 1788 bits (968), Expect = 0.0
Identities = 1112/1179 (94%), Gaps = 19/1179 (2%)
Strand=Plus/Plus
Query 8 TTTTGATTTGATTTTGATGAAAAATGGAACCACAAAttctttttctctatctctcac-tc 66
||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 1 TTTTGATTTGA-TTAGATGAAACATGGAACCACAAACTCTTTTTCTCTATCTCTCACTTC 59
Query 67 ttcattctctccctaaacttcttcttcacgaatcttAAACCAAGGCTAGTCCGCCTCTTC 126
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 -TCATTCTCTCCCTAAACTTCTTCTTCACGAATCTTAAACCGAGGCTAGTCCGCCTCTTC 118
Query 127 CAGCCTTCTTTAGAATCTCGTGTCAAGACCGCTCTTTTATCCCGAAAGGAAGTAGCCGCG 186
||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||| |
Sbjct 119 CAGCCTTCTTTGGAATCTCGTGTCAAGACCGCCCTATTATCCCGAAAAGAAGTAGCCGAG 178
Query 187 TTTCTTGATTCTCCCATTGTCgaagacgaagaaggcgaagaaagagaagaggaagaagaa 246
|||||||||||||||||||| ||||||||| || ||| | | || | | |||||||||
Sbjct 179 TTTCTTGATTCTCCCATTGTAGAAGACGAA-AAAGCG--G--A-AG-A-A-GAAGAAGAA 229
Query 247 gGAGGTATCGTTTCAAATGCCAACTTTACGTTTGAGTTTGATCCATACATGATGAGCAAA 306
|| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 230 -GA--TATCGTTTCAAATGCCAACTTCACGTTTGAATTTGATCCATACATGATAAGCAAA 286
Query 307 GCCGAATCAGTGAACAAAGCTCTAGAAGAAGCAATTCCAGTCGGAGAGCCACTCAAGATT 366
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 287 GCCGAATCAGTGAACAAAGCTCTAGACGAAGCCATTCCAGTCGGAGAGCCACTCAAGATC 346
Query 367 CATGAAGCCATGCGATACGCGATTCTTGCGGCTGGAAAACGTGTTAGGCCAATACTCTGC 426
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CACGAAGCCATGCGTTACGCGATTCTTGCGGCTGGAAAACGTGTTAGGCCAATACTCTGT 406
Query 427 CTTGCTTCTTGCGAGCTAGTAGGTGGCCAAGAAAATGCGGCAATGCCCGCCGCTTGTGCG 486
||||||||||||||||||||||| || |||||||| || |||||||| || |||||||||
Sbjct 407 CTTGCTTCTTGCGAGCTAGTAGGCGGTCAAGAAAACGCCGCAATGCCTGCGGCTTGTGCG 466
Query 487 GTTGAGATGATCCACACGATGTCTCTAATCAAAGACGATTTGCCTTGTATGGACAACGAC 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GTTGAGATGATCCACACGATGTCTCTAATCAAAGACGATTTGCCTTGTATGGACAACGAT 526
Query 547 GATTTGCGTCGTGGAAAGCCCACGACGCACAAAGTCTACGGCGAAGGAGTTGCCATTCTC 606
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 527 GATTTGCGTCGTGGAAAGCCCACGACGCATAAAGTCTACGGTGAGGGAGTTGCCATTCTC 586
Query 607 TCTGGTGGGGCTCTCTTGTCTCTTGCCTTTGAGCACATGACCACCGCTGAAATATCCTCG 666
||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| |||
Sbjct 587 TCTGGTGGGGCTCTCTTGTCTCTTGCCTTCGAGCACATGACGACGGCTGAGATATCTTCG 646
Query 667 GAGAGAATGGTTTGGGCGGTGAGAGAATTGGCTAGGTCTATTGGGACAAGAGGTTTAGTC 726
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 647 GAGAGAATGGTTTGGGCAGTGAGAGAATTGGCTAGGTCTATTGGTACAAGAGGTTTAGTC 706
Query 727 GCGGGACAAGCGATGGATATAAGCAGTGAAGGTTTGGACTTAAACGAGGTCGGATTAGAG 786
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 707 GCGGGACAAGCGATGGATATAAGCAGTGAAGGTTTGGACTTAAACGAAGTCGGATTAGAG 766
Query 787 CATTTGGAGTTTATCCATGTTCATAAAACCGCGGTTTTGTTGGAAACTGCCGCGGTTCTT 846
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 767 CATTTGGAGTTTATCCATGTCCATAAAACCGCGGTTTTGTTGGAAACTGCCGCGGTTCTT 826
Query 847 GGCGCCATAATTGGTGGTGGATCTGATGAAGAGATTGAAAGTGTGAGAAAGTTTGCAAGG 906
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GGAGCCATTATTGGTGGTGGATCTGATGAAGAGATTGAAAGTGTGAGAAAGTTTGCAAGG 886
Query 907 TGCATTGGATTGTTGTTTCAGGTGGTGGATGATATTTTGGACGAGACGAAGTCGTCGGAG 966
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 887 TGCATTGGATTGTTGTTTCAGGTGGTGGATGATATTTTGGACGAGACAAAGTCATCGGAG 946
Query 967 GAATTGGGAAAAACCGCCGGGAAAGATCAGCTCGCCGGAAAGCTAACGTATCCAAAGTTG 1026
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 947 GAATTGGGAAAAACCGCCGGAAAAGATCAGCTCACCGGAAAGCTAACGTATCCGAAGTTG 1006
Query 1027 ATAGGGTTGGAGAAATCGAAAGAATTTGTTAAGAGATTGACGAAAGATGCACGGCAACAT 1086
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATGGGGTTGGAGAAATCGAAAGAATTTGTTAAGAGATTGACGAAAGATGCACGGCAACAT 1066
Query 1087 CTTCAAGGGTTTAGTTCTGAAAAGGTTGCTCCTTTAGTAGCTCTTACTACTTTTATTGCT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CTTCAAGGGTTTAGTTCTGAAAAGGTTGCTCCTTTAGTAGCTCTTACTACTTTTATTGCT 1126
Query 1147 AATAGAAATAAGTGATTATATATTTGTTTTGTTTGTGTG 1185
||||||||||||||||||| | | ||||| ||||||||
Sbjct 1127 AATAGAAATAAGTGATTAT-T-T--GTTTTATTTGTGTG 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5