BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23810.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481243 jgi|Araly1|481243|fgenesh2_kg.4__303__AT2G23810.1 1676 0.0
> Ahg481243 jgi|Araly1|481243|fgenesh2_kg.4__303__AT2G23810.1
Length=1230
Score = 1676 bits (907), Expect = 0.0
Identities = 1076/1153 (93%), Gaps = 30/1153 (3%)
Strand=Plus/Plus
Query 4 ACCAAAACAAACGAAACTTCTCTGCAATAGCCTTCTCCAAATTTCCTCACTTTCACGCGT 63
|||||| ||||||||||||||||| |||| || ||||||||||||| ||||||||||||
Sbjct 1 ACCAAACCAAACGAAACTTCTCTGTAATATCC-TCTCCAAATTTCCGAACTTTCACGCGT 59
Query 64 TTCAGTCTTCTCTATATAAACTTGTTT-CATC-AACCCATCAAAATCCCACTCAAATTCT 121
|||| |||||||||||| ||||| ||| || | |||||||||||| ||||||| |
Sbjct 60 TTCAATCTTCTCTATATTAACTTATTTCCA-CAAACCCATCAAAA-CCCACTC--A---- 111
Query 122 GTTTCAGTGTTCTTCAAATTCTCAATCTTTCTCTCAATTCATCTAAAGGGTTCCTCAAAG 181
|| |||||| |||||||||| |||||||||| | ||||||| |||||||||||||||
Sbjct 112 --TT--GTGTTCCTCAAATTCTCTATCTTTCTCTGATTTCATCTTAAGGGTTCCTCAAAG 167
Query 182 TTTCAATCTTTCTCTCTGAATCTAAACCATGGCTCGTTGTAGCAACAATCTCGTAGGGAT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TTTCAATCTTTCTCTCTGAATCTAAACCATGGCTCGTTGTAGCAACAATCTCGTAGGGAT 227
Query 242 ACTCAATTTCCTAGTATTTCTTCTCTCGATCCCAATCTTAGCTGGTGGAATCTGGCTAAG 301
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 228 ACTAAATTTCCTTGTCTTTCTTCTCTCAATCCCAATCTTAGCTGGTGGAATCTGGCTAAG 287
Query 302 CCAAAAAGGGTCAACAGAGTGTGAAAGATTCCTAGACAAACCAGTGATTGCTCTTGGTGT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CCAAAAAGGGTCAACAGAGTGTGAAAGATTCCTAGACAAACCAGTGATTGCTCTTGGTGT 347
Query 362 TTTCCTTATGGTTGTAGCAATAGCTGGTCTAATAGGTTCATGTTGTAGAGTCACATGGCT 421
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 348 TTTCCTTATGGTTGTAGCAATAGCTGGTTTAATAGGTTCTTGTTGTAGAGTCACATGGCT 407
Query 422 TCTTTGGGTTTATCTCTTTGTCATGTTCCTTTTGATTCTCCTTGTGTTCTGTATAACAGT 481
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 408 TCTTTGGGTTTATCTCTTTGTCATGTTCCTTTTGATTCTTCTTGTGTTCTGTATTACTGT 467
Query 482 TTTTGCCTTTGTTGTTACTAACAAAGGAGCTGGTGAAGCTATTGAAGGAAAAGGTTATAA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TTTTGCCTTTGTTGTTACTAACAAAGGAGCTGGTGAAGCTATTGAAGGAAAAGGTTATAA 527
Query 542 AGAGTATAAACTTGGTGATTACTCT-ACTTGGTTACAGAAACGTGTTGAGAATGGTAAAA 600
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 528 AGAGTATAGACTTGGTGATTACTCTGA-TTGGTTACAGAAACGTGTTGAGAATGGAAAAA 586
Query 601 ATTGGAATAAGATTAGGAGTTGTCTTGTGGAGAGCAAAGTTTGTTCTAAGCTTGAAGCCA 660
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 587 ATTGGAATAAGATTAGAAGTTGTCTTGTTGAGAGCAAAGTTTGTTCTAAGCTTGAAGCTA 646
Query 661 AGTTTGTTAATGTTCCTGTCAATAGTTTCTACAAGGAACATCTTACTGCTCTTCAGTCTG 720
|||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||
Sbjct 647 AGTTTGTTAATGTTCCGGTGACTAGTTTCTACAATGAACATCTTACTGCTCTTCAGTCTG 706
Query 721 GTTGCTGCAAACCTTCAGATGAATGTGGTTTCGAGTACGTAAACCCAACAACCTGGACCA 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 707 GTTGCTGCAAACCTTCAGATGAATGCGGTTTCGAGTACGTAAACCCAACAACCTGGAACA 766
Query 781 AGAACACAACGGGAACACACACTAATCCAGACTGCCAAACCTGGGACAACGCAAAAGAAA 840
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 767 AGAACACAACGGGAACACACACTAATCCAGACTGCCAAACATGGGACAACGCGAAAGAAA 826
Query 841 AGCTCTGCTTCGATTGTCAATCTTGTAAAGCGGGTCTACTCGACAACGTCAAAAGCGCTT 900
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 827 AGCTCTGCTTCGACTGTCAATCTTGCAAAGCGGGTCTACTCGACAACGTCAAAAGCGCTT 886
Query 901 GGAAGAAAGTTGCAATCGTTAACATCGTCTTCCTTGTCTTCCTCATCATTGTCTACTCTG 960
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 887 GGAAGAAAGTTGCAATCGTCAACATCATCTTCCTTGTCTTCCTCATCATTGTCTACTCTG 946
Query 961 TTGGTTGCTGTGCTTTCAGGAACAACAAGAGGGATGACAGTTATTCCCGTACCTACGGAT 1020
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 947 TTGGTTGCTGTGCTTTCAGGAACAACAAGAGGGATGATAGTTATACTCGTACCTACGGAT 1006
Query 1021 ATAAGCCTTGAACATAGTTTATCGGGTTTTAGGACAGAGATTCGTTGAT------A--CA 1072
||||||||||||||||||||| | ||||||||||||||||||||||||| | ||
Sbjct 1007 ATAAGCCTTGAACATAGTTTAACCGGTTTTAGGACAGAGATTCGTTGATCGGTTTATACA 1066
Query 1073 TTGTTGGAGTTTGGTTTTATGTTTGATGATTTTTATCTTTGGTGTTTTGATGAGACCTAT 1132
|| | |||||||| ||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct 1067 TTAT-GGAGTTTGCTTTTATGTTTGAT--TTTT-ATCTT-GGTGTTTTGATGAGACATAT 1121
Query 1133 TGCTTGTACAGCT 1145
|||||||||||||
Sbjct 1122 TGCTTGTACAGCT 1134
Score = 156 bits (84), Expect = 4e-37
Identities = 94/99 (95%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1184 GCTAAACCTTGATATTGATTTATTATATGCTTTTATTAGTTTATTGTTTCTCTATTCATA 1243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1132 GCTATACCTTGATATTGATTTATTATATGCTTTTATTAGTTTATTGTTTCTCTATACATA 1191
Query 1244 TCATGTTCTTTTGTTCTTCTCCTTGAGGAACAGAGAAGC 1282
||||||||||||| ||||||| || ||||||||||||||
Sbjct 1192 TCATGTTCTTTTGATCTTCTCTTTAAGGAACAGAGAAGC 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5