BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23820.2
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481245 jgi|Araly1|481245|fgenesh2_kg.4__305__AT2G23820.2 1483 0.0
> Ahg481245 jgi|Araly1|481245|fgenesh2_kg.4__305__AT2G23820.2
Length=951
Score = 1483 bits (803), Expect = 0.0
Identities = 903/950 (95%), Gaps = 12/950 (1%)
Strand=Plus/Plus
Query 51 AAAG-aaaaaaaaaGAAAGATGAAGAATGTGAATCGAGTCTTCTTCTGCAAATCACTATC 109
|||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAAGCAAAAAAAAA-AAAAATGAAGAATGTGAATCGAGTCTTCTTCTGCAAATCACTCTC 59
Query 110 TCTCGTCTTCCTCGTTCCTTCTTTCACTCGTTCTCATATCCGATTTACTTACTCCGCCGC 169
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 60 TCTCGTCTTCCTCGTTCCTTCTTTCACTCGTTCTCATCTCCGATTCACTTACTCCGCCGC 119
Query 170 CGGTGCTTCTTCTCCTAATCGAGCTATTCACTGCATGGCTTCCGATTCCCCTCAATCCGG 229
||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 120 CGGAGCTTCTTCTCCGAATCGAGCAATTCATTGCATGGCTTCCGATTCCCCTCAATCCGG 179
Query 230 AGATGGTTCCGTCTCTTCTCCTCCTAATGTCGCGGCTGttccctcttcttcttcttcttc 289
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 180 AGATGGTTCCGTCTCTTCTCCTCCTAATGTCGCGGCGGTTCCCACTTCTTCTTCTTCTTC 239
Query 290 gtccgcttcttccgccattgatttcctctctctctGTACTCGTCTCAAGACAACTCCAAG 349
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GTCCGCTTCTTCCGCCATTGATTTTCTCTCTCTCTGTACTCGTCTCAAGACAACTCCAAG 299
Query 350 AGCTGGATGGATTAAGAGAGATGTGAAAGATCCAGAATCTATAGCGGATCACATGTATCG 409
|||||||||||| ||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 300 AGCTGGATGGATAAAGAGAGATGTTAAAGATCCAGAATCAATTGCGGATCATATGTATCG 359
Query 410 GATGGGTCTTATGGCTCTAATTTCTTCAGATATCCCCGGTGTTAACAGAGACAAATGCAT 469
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GATGGGTCTTATGGCTCTAATTTCTTCAGATATCCCTGGTGTTAACAGAGACAAATGCAT 419
Query 470 GAAAATGGCGATTGTTCATGATATTGCAGAAGCCATTGTAGGAGACATTACACCTTCTTG 529
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAAATGGCAATTGTTCATGACATTGCAGAAGCCATTGTAGGAGACATTACACCTTCTTG 479
Query 530 TGGGATATCTAAAGAAGAGAAAAACCGAAGAGAAAGCGAAGCACTTGAGCACATGTGCAA 589
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TGGGATCTCTAAAGAAGAGAAAAACCGAAGAGAAAGCGAAGCACTTGAACACATGTGCAA 539
Query 590 ACTCTTGGGTGGAGGCGAAAGAGCAAAAGAAATCGCTGAGCTTTGGAGAGAATACGAAGA 649
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 ACTCTTGGGTGGAGGAGAAAGAGCCAAAGAAATCGCTGAGCTTTGGAGAGAATACGAAGA 599
Query 650 GAACTCTTCACCTGAAGCCAAAGTTGTTAAAGATTTCGATAAAGTTGAGCTGATACTACA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACTCTTCACCTGAAGCCAAAGTTGTTAAAGATTTCGATAAAGTTGAGCTGATACTACA 659
Query 710 AGCTTTGGAATATGAACAAGATCAAGGGAAAGATCTAGAAGAGTTTTTCCAATCAACAGC 769
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 660 AGCTTTGGAATATGAACAAGGTCAAGGGAAAGATTTAGAAGAGTTTTTCCAATCAACCGC 719
Query 770 AGGGAAGTTCCAGACTAATATAGGCAAGGCTTGGGCGTCGGAGATTGTTTCAAGAAGACG 829
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 720 AGGGAAGTTCCAGACTGATATAGGTAAGGCTTGGGCATCGGAGATTGTTTCAAGAAGACG 779
Query 830 AAAGCAACATTAGTTCTCACTTGACTCTTTCTTTTT--G-TTTCTTAACGTCTAG--CTC 884
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||
Sbjct 780 AAAGCAACATTAGTTCTCACTTGACTCTTTTTTTTTTTGGTTTCTTAACGTCTAGTTCTC 839
Query 885 AGTGGAGTTCA--AA-TACTCGTA-CGTTTCAAATTTAATCATCTTAAGGTTTTTCTAAT 940
||||||||||| || |||| ||| ||||||||||||| | |||||||| ||||||||||
Sbjct 840 AGTGGAGTTCATCAAATACT-GTAACGTTTCAAATTTAGTTATCTTAAGATTTTTCTAAT 898
Query 941 AATCTTCGTAGCTGTCTTTACTTGTTTTGTTACTATCACTAATAAAAGAT 990
|||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 899 AATCTTCGTAGCTGGCTTTACTTGTTTTGTTTCTATCACTAATAAAAGAT 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39800325348
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5