BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23830.1
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899705 jgi|Araly1|899705|Al_scaffold_0004_355 580 2e-165
Ahg899704 jgi|Araly1|899704|Al_scaffold_0004_354 542 1e-153
Ahg899703 jgi|Araly1|899703|Al_scaffold_0004_353 542 1e-153
Ahg486536 jgi|Araly1|486536|fgenesh2_kg.5__2528__AT3G60600.2 457 4e-128
Ahg932384 jgi|Araly1|932384|scaffold_400372.1 313 8e-85
Ahg483647 jgi|Araly1|483647|fgenesh2_kg.4__2707__AT2G45140.1 309 1e-83
> Ahg899705 jgi|Araly1|899705|Al_scaffold_0004_355
Length=417
Score = 580 bits (314), Expect = 2e-165
Identities = 384/418 (92%), Gaps = 4/418 (1%)
Strand=Plus/Plus
Query 34 ATGTATCTTCAATTCCCTTTTGAATTGAAGAAGCAGATGTCTTGCTCTCTTTACTTGACG 93
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGTACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATGTCTTGCTCTCTTAACTTGACG 60
Query 94 AACAAGACAGACAATAACGTGGCCTTTAAGGTTAAGACGACAAATCGGAACAACTATTGC 153
||||||||||||||||| | |||||||||||||||||||| ||||| ||| || ||||||
Sbjct 61 AACAAGACAGACAATAATGGGGCCTTTAAGGTTAAGACGAAAAATCCGAAAAATTATTGC 120
Query 154 GTTAGGCCTAATTATGGACTTATTCTTCCAAAGTCGACTTGTAAAGTTCTTGTGACCATG 213
|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 121 GTTAGGTCTAATTATGGACTAATTCTTCCAAAGTCAACTTGTAAAGTTCTTGTGACAATG 180
Query 214 CAAGCTCAAAAGGAAGTTCCT--T-CTGATATGCAGAGCTTTGAAAAGTTTATGATTCAA 270
||||| ||||||||||||| | | |||||||||||||| |||||||||||||||||||
Sbjct 181 CAAGCCCAAAAGGAAGTTCTTAATTCTGATATGCAGAGCAATGAAAAGTTTATGATTCAA 240
Query 271 AGTGTACTGGCTAGTCCTGGAGTCACAGCCAAAGAAGTTACTCGTGAGATGTTTAGCAAA 330
|||||| | |||||||||||| ||||||||||||||||||||||||||| ||| || |||
Sbjct 241 AGTGTAATAGCTAGTCCTGGACTCACAGCCAAAGAAGTTACTCGTGAGACGTTAAGGAAA 300
Query 331 GAATCAGGGCATGTAGTTGAGGAGACTAAACTGAGAGTTACTTATGTTTGCTCCACCACG 390
||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 301 GAATCGGGGCATCTAGTTGAGGAGACTAAACTGAAAGTTTCTTATGTTTGCTCCACCACG 360
Query 391 ACCAACATCACTAGTTCACCAAGGACTAGAAGAGGGTTTATATTTCAGTGTTTTTGTT 448
|| |||||||| | |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 361 AC-AACATCACCAATTCACCAAGGACCAGAAGAGGGTTTATATTTTAGTGTTTTTGTT 417
> Ahg899704 jgi|Araly1|899704|Al_scaffold_0004_354
Length=660
Score = 542 bits (293), Expect = 1e-153
Identities = 353/382 (92%), Gaps = 4/382 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAACAACGAGCTTCTCGAAATCGAGCCTATGTATCTTCAATTCCCTTTTGAATTG 60
||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 278 ATG-GTAACAACGAGCTTCTCAAAATCGAGCCTATGTACCTTCAATTCCCTTTTGAATTG 336
Query 61 AAGAAGCAGATGTCTTGCTCTCTTTACTTGACGAACAAGACAGACAATAACGTGGCCTTT 120
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 337 AAGAAGCAGATGTCTTGCTCTCTTAACTTGACGAACAAGACAGACAATAATGGGGCCTTT 396
Query 121 AAGGTTAAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTATGGACTTATTCTT 180
||||||||||||| ||||| ||| || |||||||||||| ||||||||||||| ||||||
Sbjct 397 AAGGTTAAGACGAAAAATCCGAAAAATTATTGCGTTAGGTCTAATTATGGACTAATTCTT 456
Query 181 CCAAAGTCGACTTGTAAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGTTCCT--T-CT 237
|||||||| |||||||||||||||||||| |||||||| ||||||||||||| | | ||
Sbjct 457 CCAAAGTCAACTTGTAAAGTTCTTGTGACAATGCAAGCCCAAAAGGAAGTTCTTAATTCT 516
Query 238 GATATGCAGAGCTTTGAAAAGTTTATGATTCAAAGTGTACTGGCTAGTCCTGGAGTCACA 297
|||||||||||| ||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 517 GATATGCAGAGCAATGAAAAGTTTATGATTCAAAGTGTAATAGCTAGTCCTGCAGTCACA 576
Query 298 GCCAAAGAAGTTACTCGTGAGATGTTTAGCAAAGAATCAGGGCATGTAGTTGAGGAGACT 357
|||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 577 GCCAAAGAAGTTACTCGTGAGACGTTTAGGAAAGAATCAGGGCATCTAGTTGAGGAGACT 636
Query 358 AAACTGAGAGTTACTTATGTTT 379
||||||| |||||||||| |||
Sbjct 637 AAACTGAAAGTTACTTATTTTT 658
> Ahg899703 jgi|Araly1|899703|Al_scaffold_0004_353
Length=660
Score = 542 bits (293), Expect = 1e-153
Identities = 353/382 (92%), Gaps = 4/382 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAACAACGAGCTTCTCGAAATCGAGCCTATGTATCTTCAATTCCCTTTTGAATTG 60
||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 278 ATG-GTAACAACGAGCTTCTCAAAATCGAGCCTATGTACCTTCAATTCCCTTTTGAATTG 336
Query 61 AAGAAGCAGATGTCTTGCTCTCTTTACTTGACGAACAAGACAGACAATAACGTGGCCTTT 120
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 337 AAGAAGCAGATGTCTTGCTCTCTTAACTTGACGAACAAGACAGACAATAATGGGGCCTTT 396
Query 121 AAGGTTAAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTATGGACTTATTCTT 180
||||||||||||| ||||| ||| || |||||||||||| ||||||||||||| ||||||
Sbjct 397 AAGGTTAAGACGAAAAATCCGAAAAATTATTGCGTTAGGTCTAATTATGGACTAATTCTT 456
Query 181 CCAAAGTCGACTTGTAAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGTTCCT--T-CT 237
|||||||| |||||||||||||||||||| |||||||| ||||||||||||| | | ||
Sbjct 457 CCAAAGTCAACTTGTAAAGTTCTTGTGACAATGCAAGCCCAAAAGGAAGTTCTTAATTCT 516
Query 238 GATATGCAGAGCTTTGAAAAGTTTATGATTCAAAGTGTACTGGCTAGTCCTGGAGTCACA 297
|||||||||||| ||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 517 GATATGCAGAGCAATGAAAAGTTTATGATTCAAAGTGTAATAGCTAGTCCTGCAGTCACA 576
Query 298 GCCAAAGAAGTTACTCGTGAGATGTTTAGCAAAGAATCAGGGCATGTAGTTGAGGAGACT 357
|||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 577 GCCAAAGAAGTTACTCGTGAGACGTTTAGGAAAGAATCAGGGCATCTAGTTGAGGAGACT 636
Query 358 AAACTGAGAGTTACTTATGTTT 379
||||||| |||||||||| |||
Sbjct 637 AAACTGAAAGTTACTTATTTTT 658
> Ahg486536 jgi|Araly1|486536|fgenesh2_kg.5__2528__AT3G60600.2
Length=1310
Score = 457 bits (247), Expect = 4e-128
Identities = 373/433 (86%), Gaps = 11/433 (3%)
Strand=Plus/Plus
Query 1 ATGAGTAACAACGAGCTTCTCGA-AATCGAGCCTAT-GTATCTTCAATTCCCTTTTGAAT 58
|||||||||| |||||||||| | | |||||| | | |||||||||||||||||||||
Sbjct 123 ATGAGTAACAGCGAGCTTCTC-ACCGTGGAGCCTCTCG-ATCTTCAATTCCCTTTTGAAT 180
Query 59 TGAAGAAGCAGATGTCTTGCTCTCTTTACTTGACGAACAAGACAGACAATAACGTGGCCT 118
||||||||||||| ||||||||||| || |||||||||||||| |||||||| || ||||
Sbjct 181 TGAAGAAGCAGATCTCTTGCTCTCTGTATTTGACGAACAAGACCGACAATAATGTTGCCT 240
Query 119 TTAAGGTTAAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTA-TGGACTTATT 177
||||||||||||| || |||| ||| || ||||| ||||||||||| | |||| || ||
Sbjct 241 TTAAGGTTAAGACTACGAATCCGAAAAAGTATTGTGTTAGGCCTAAC-ACTGGAGTTGTT 299
Query 178 CTTCCAAAGTCGACTTGTAAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGTTCCTTCT 237
||||| | ||| |||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 CTTCCCAGGTCTACTTGTGAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGCTCCTTCA 359
Query 238 GATATGCAGAGCTTTGAAAAGTTTATGATTCAAAGTGT-ACTGGCTAGTCCTGGAGTCAC 296
||||||||| || || |||||| || | ||| |||| | | ||||||||||| |||||
Sbjct 360 GATATGCAGTGCAAGGACAAGTTTCTGCTCCAAGGTGTGA-TAGCTAGTCCTGGTGTCAC 418
Query 297 AGCCAAAGAAGTTACTCGTGAGATGTTTAGCAAAGAATCAGGGCATGTAGTTGAGGAGAC 356
|||||| |||||||||| |||||||||||||||||| | || ||| |||||||||| ||
Sbjct 419 AGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCTAGTTGAGGAAAC 478
Query 357 TAAACTGAGAGTTACTTATGTTTGCTCCACCACGACCAACATCACTAGTTCACCAAGGA- 415
|||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||
Sbjct 479 TAAACTGAGAGTTACTTATGTT-GCTCCACCACGACCACCATCACCGGTTCACGAAGGAT 537
Query 416 CTAGAAGAGGGTT 428
|| ||||||||||
Sbjct 538 CT-GAAGAGGGTT 549
> Ahg932384 jgi|Araly1|932384|scaffold_400372.1
Length=289
Score = 313 bits (169), Expect = 8e-85
Identities = 194/206 (94%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAACAACGAGCTTCTCGAAATCGAGCCTATGTATCTTCAATTCCCTTTTGAATTG 60
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 21 ATGAGTAACAACGAGCTTCTCAAAATCGAGCCTATGTACCTTCAATTCCCTTTTGAATTG 80
Query 61 AAGAAGCAGATGTCTTGCTCTCTTTACTTGACGAACAAGACAGACAATAACGTGGCCTTT 120
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 81 AAGAAGCAGATGTCTTGCTCTCTTAACTCGACGAACAAGACAGCCAATAACGTGGCCTTT 140
Query 121 AAGGTTAAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTATGGACTTATTCTT 180
||||||||||||||||||| ||| || ||||||||||||||||||||| |||| ||||||
Sbjct 141 AAGGTTAAGACGACAAATCCGAAAAATTATTGCGTTAGGCCTAATTATAGACTAATTCTT 200
Query 181 CCAAAGTCGACTTGT-AAAGTTCTTG 205
||||||||||||||| ||| ||||||
Sbjct 201 CCAAAGTCGACTTGTGAAA-TTCTTG 225
> Ahg483647 jgi|Araly1|483647|fgenesh2_kg.4__2707__AT2G45140.1
Length=1204
Score = 309 bits (167), Expect = 1e-83
Identities = 346/429 (81%), Gaps = 25/429 (6%)
Strand=Plus/Plus
Query 10 AACGAGCTTCTCGA-AATCGAGCCTAT-GTATCTTCAATTCCCTTTTGAATTGAAGAAGC 67
|||||||||||| | ||||| ||| | | | ||||||||||||||||||||||||||||
Sbjct 223 AACGAGCTTCTC-ACCATCGATCCTGTCG-ACCTTCAATTCCCTTTTGAATTGAAGAAGC 280
Query 68 AGATGTCTTGCTCTCTTTACTTGACG-AACAAGACAGACAATAACGTGGCCTTTAAGGTT 126
|||| ||||| ||||| || ||| | |||||||| || ||| | || ||||| ||||||
Sbjct 281 AGATCTCTTGTTCTCTCTATTTGG-GTAACAAGACCGATAATTATGTCGCCTTCAAGGTT 339
Query 127 AAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTA-TGGACTTATTCTTCCAA- 184
|| ||||| |||| || || || ||||||||||||||| | ||| || ||| ||| |
Sbjct 340 AAAACGACGAATCCAAAGAAGTACTGCGTTAGGCCTAAT-ACTGGTGTTGTTCATCCCAG 398
Query 185 AGTCGACTTGTAAAGTTCTT-GTGACCATGCAAGCTCAAAAGGAAGTTCCTTCTGATATG 243
| || ||| | ||||| || ||||||||||||||||||||||||| ||| ||||||||
Sbjct 399 A-TCCTCTTCTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCCGCTGATATG 456
Query 244 CAGAGCTTT-GAAAAGTT-TATGATTCAAAGTGTACTGGCTAGTCCTGGAGTCACAGCCA 301
||| | | || ||||| | || ||||| ||||| |||||||||| |||| ||| |||
Sbjct 457 CAGTG-TAAAGATAAGTTCT-TGCTTCAATGTGTAGTGGCTAGTCCCGGAGCCACCCCCA 514
Query 302 AAGAAGTTACTCGTGAGATGTTTAGCAAAGAATCAGGGCAT-GTAGTTGAGGAGACTAAA 360
| || ||||||| |||||||||||||||||| |||||||| | ||| || |||||||||
Sbjct 515 AGGATGTTACTCATGAGATGTTTAGCAAAGAGGCAGGGCATCG-AGTCGAAGAGACTAAA 573
Query 361 CTGAGAGTTA-CTTATGTTTGCTCCACCACGACCAACATCACTAGTTC-ACCAAGGA-CT 417
|||||||| || ||||| ||||||||||||||| |||||| |||| | ||||| ||
Sbjct 574 TTGAGAGTTGTCT-ATGTT-GCTCCACCACGACCACCATCACCGGTTCGAG-AAGGATCT 630
Query 418 AGAAGAGGG 426
||||||||
Sbjct 631 -GAAGAGGG 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16254280914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5