BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23900.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932390 jgi|Araly1|932390|scaffold_400378.1 2388 0.0
Ahg323502 jgi|Araly1|323502|fgenesh1_pm.C_scaffold_5001046 322 5e-87
Ahg937663 jgi|Araly1|937663|scaffold_501854.1 313 3e-84
> Ahg932390 jgi|Araly1|932390|scaffold_400378.1
Length=1474
Score = 2388 bits (1293), Expect = 0.0
Identities = 1415/1475 (96%), Gaps = 3/1475 (0%)
Strand=Plus/Plus
Query 23 AACAAGTCATAAGAATC-AAATGGAGTTCTCTATCAATCCTTCAACTCTAAAGATGATTC 81
||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AACAAGTCAGAAGAATCAAAATGGAGTTCTCTATTAATCCTTCAACTCTAAAGATGATTC 60
Query 82 GGACAAGTTTTTGTATATTAGTAGTTTTGGCAATTAGTAGTTTTTCGATGATGGAAGCTC 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGACAAGTTTTTGTATATTAGTAGTTTTGGCAATTAGTAGTTTTTCGATGATGGAAGCTC 120
Query 142 GGGATCTA-GCTAGCAAAGGAAAGACAAATATTGAATATATGGCGTTGAATTGTCGAAAA 200
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGATCTAGGCT-GCAAAGGAAAGACAAATATTGAATATATGGCGTTGAATTGTCGAAAA 179
Query 201 CATACCGCAGTTTTGACAGAATTTGGAGCAGTTGGTGATGGAAAGACCTCGAACACAAAA 260
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 180 CATACCGCAGTTTTGACAGAATTTGGAGCAGTGGGTGATGGAAAGACCTCGAACACGAAA 239
Query 261 GCGTTCAAAGAAGCCATAACCAAGCTTGCTCCAAAGGCAGCCGACGGTGGAGTGCAACTC 320
||||| |||||||||||||| |||||||| || ||||| || ||||||||||||||||||
Sbjct 240 GCGTTTAAAGAAGCCATAACTAAGCTTGCCCCCAAGGCGGCGGACGGTGGAGTGCAACTC 299
Query 321 ATTGTTCCACCAGGAAAATGGCTAACCGGAAGTTTCAACCTCACCAGCCATTTTACTTTG 380
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 ATTGTTCCACCAGGCAAATGGCTAACCGGAAGTTTCAACCTCAGCAGCCATTTTACTTTG 359
Query 381 TTCATCCAAAAAGGTGCAACTATTCTTGCTTCTCAGGATGAATCTGAATATCCAGTGGTT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCATCCAAAAAGGTGCAACTATTCTTGCTTCTCAGGATGAATCTGAATATCCAGTGGTT 419
Query 441 GCACCTTTGCCATCATACGGACAAGGAAGAGATGCAGCAGGACCAACATTTGCTAGTCTA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCACCTTTGCCATCATACGGACAAGGAAGAGATGCAGCAGGACCAACATTTGCTAGTCTA 479
Query 501 ATCTCTGGCACAAACCTAACTGATGTTGTTATCACCGGTAACAACGGAACGATCAACGGG 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCTCTGGCACAAACCTAACTGATGTTGTTATCACCGGTAACAACGGAACGATCAACGGA 539
Query 561 CAAGGAAAGTACTGGTGGGTGAAGTATCGCAGTGGTGGATTTAAGGGGATCACAAGACCT 620
|||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct 540 CAAGGAAAATACTGGTGGGTGAAGTATCGAAGTGGTGGATTTAAGAATATCACGAGACCT 599
Query 621 TACACAATCGAGATCATCTTCTCTCAAAACGTTCAGATCTCGAACATCACAATCATCGAT 680
||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 600 TACACAATCGAAATCATGTTCTCTCAAAATGTTCAGATCTCGAACATCACGATCATCGAT 659
Query 681 TCGCCTGCATGGAATATTCATCCTGTATATTGCAACAATGTCATCGTCAAAGGCGTTACC 740
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 660 TCGCCTGCATGGAACATTCATCCCGTATATTGCAACAACGTCATCGTCAAAGGCGTTACC 719
Query 741 ATTCTTGCTCCTATCGATTCTCCTAATACCGATGGAATCAACCCTGATTCATGCACCAAC 800
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 ATTCTTGCTCCTATCGATTCTCCTAATACCGATGGAATCAACCCTGATTCGTGCACCAAC 779
Query 801 ACATTGATAGAAGACTGTTACGTAGTCTCGGGAGACGATTGCATCGCCGTGAAGAGCGGT 860
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 780 ACATTGATAGAAGACTGTTACGTAGTCTCTGGAGACGATTGCATAGCCGTGAAGAGCGGT 839
Query 861 TGGGATCAGTTTGGTATCAAAGTCGGCATGCCAACTCAACAATTGTCTATCCGACGGCTC 920
|||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 840 TGGGATCAGTTTGGTATCAAAGTCGGCATGCCAACTAAACAACTGTCCATCCGACGGCTC 899
Query 921 ACATGCATCTCTCCCGACAGCGCTGGAATAGCACTCGGAAGTGAAATGTCCGGTGGAATC 980
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 900 ACATGCATCTCTCCCGACAGCGCAGGAATAGCACTTGGAAGCGAAATGTCCGGTGGAATC 959
Query 981 AAAGACGTTAGAATCGAAGACATTACATTACTTCAGACACAATCCGCTATCCGAATCAAA 1040
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 960 AAAGACGTTAGAATCGAAGACATTACGTTACTCCAGACACAATCCGCTATCCGAATCAAA 1019
Query 1041 ACCGCGGTTGGTCGTGGTGGTTATGTTAAGGATATTTTCGCCAGGAGGTTCACAATGAAA 1100
||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1020 ACCGCAGTTGGTCGTGGTGGTTACGTTAAGGATATATTCGCCCGGAGGTTCACAATGAAA 1079
Query 1101 ACAATGAAATACGTTTTCTGGATGAGCGGTGCTTATAACCAACACCCCGCTTCCGGTTTT 1160
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACCATGAAATATGTTTTTTGGATGAGCGGTGCTTATAACCAACACCCCGCTTCCGGTTTT 1139
Query 1161 GATCCCAAGGCTATGCCCGTGATTACGAATATCAACTACCGTGACATGACCGCGGATAAT 1220
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1140 GATCCCAAGGCTATGCCCGAGATTACGAATATTAACTACCGTGACATGACCGCGGATAAT 1199
Query 1221 GTCACGCAACCTGCGAGGCTCGATGGGTTCAAGAACGATCCTTTCACAAAGATATGTATG 1280
||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1200 GTCACACAACCCGCAAGGCTCGATGGGTTCAAGAACGATCCATTCACAAAGATATGTATG 1259
Query 1281 TCGAATATAAAGATTGATTTGGCTGCTGAGCCGAAGAAGTTGTTGTGGAATTGTACAAGC 1340
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 1260 TCGAATATAAAGATTGATTTGGCTGCTGAGCCAAAGAAGCTGTTGTGGAATTGTACAAAC 1319
Query 1341 ATCTCTGGAGTTTCGAGCAAGGTTACACCTAAACCGTGTAGTTTGTTGCCGGAGAAAGGA 1400
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1320 ATCTCCGGAGTTTCGAGCAAGGTGACACCCAAACCATGTAGTTTGTTGCCGGAGAAAGGA 1379
Query 1401 GCACCGGTGGACTGTGCTTTTCCGGTTGATAAGATTCCTATTGAATCTGTTGTCCTGAAC 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCACCGGTGGACTGTGCTTTTCCGGTTGATAAGATTCCTATTGAATCTGTTGTCCTGAAC 1439
Query 1461 AAATGCTCTGCTTAGAGATTGTGAACGGAGATAAT 1495
|||||||||||||||||||||||||||||||||||
Sbjct 1440 AAATGCTCTGCTTAGAGATTGTGAACGGAGATAAT 1474
> Ahg323502 jgi|Araly1|323502|fgenesh1_pm.C_scaffold_5001046
Length=3339
Score = 322 bits (174), Expect = 5e-87
Identities = 254/293 (87%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 171 ATTGAATATATGGCGTTGAATTGTCGAAAACATACCGCAGTTTTGACAGAATTTGGAGC- 229
||||||||| |||||||||||||||||||||| | || |||||||| || ||||||||
Sbjct 2515 ATTGAATATCTGGCGTTGAATTGTCGAAAACACAGAGCGGTTTTGACGGATTTTGGAGCT 2574
Query 230 AGTTGGTGATGGAAAGACCTCGAACACAAAAGCGTTCAAAGAAGCCATAACCAAGCTTGC 289
| |||| |||||||| ||||| ||||| |||||||| | |||||| |||||||||||| |
Sbjct 2575 A-TTGGAGATGGAAAAACCTCAAACACGAAAGCGTTTAGAGAAGCAATAACCAAGCTTAC 2633
Query 290 TCCAAAGGCAGCCGACGGTGGAGTGCAACTCATTGTTCCACCAGGAAAATGGCTAACCGG 349
| ||||||| | ||||||||||| ||||||||||| || || || || ||||| |||||
Sbjct 2634 TACAAAGGCGGTTGACGGTGGAGTCCAACTCATTGTACCGCCGGGGAATTGGCTCACCGG 2693
Query 350 AAGTTTCAACCTCACCAGCCATTTTACTTTGTTCATCCAAAAAGGTGCAACTATTCTTGC 409
||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||
Sbjct 2694 AAGTTTCAACCTCACAAGCCATTTTACTTTGTTTATTCAGCAAGGTGCAACTATTCTTGC 2753
Query 410 TTCTCAGGATGAATCTGAATATCC-AGTGGTTGCACCTTTGCCATCATACGGA 461
|||||||||||||||||||||||| | || || | |||||||| |||||||||
Sbjct 2754 TTCTCAGGATGAATCTGAATATCCTA-TGATTCCGCCTTTGCCGTCATACGGA 2805
> Ahg937663 jgi|Araly1|937663|scaffold_501854.1
Length=1377
Score = 313 bits (169), Expect = 3e-84
Identities = 487/631 (77%), Gaps = 60/631 (10%)
Strand=Plus/Plus
Query 172 TTGAATATATGGCGTTGAATTGTCGAAAACATACCGCAG-TTTTGACAGAATTTGGAGC- 229
||||| || ||| ||||||||||| | ||| | || | ||||||| || ||||||||
Sbjct 152 TTGAACATGCGGCCTTGAATTGTCGGAGACAAAGTGC-GATTTTGACGGATTTTGGAGCT 210
Query 230 AGTTGGTGATGGAAAGACCTCGAACACAAAAGCGTTCAAAGAAGCCATAACCAAGCTTGC 289
| |||| |||||||| ||||| ||||| |||||||| | ||||||||||| || ||| |
Sbjct 211 A-TTGGAGATGGAAAAACCTCAAACACGAAAGCGTTTAGAGAAGCCATAAGAAACCTTAC 269
Query 290 -TCCAAAGGCAGCCGACGGTGG-AGTGCAACTCATTGTTCC-ACCAGGAAAATGGCTAAC 346
|| | | |||| ||| ||||| || ||||||||||| || | ||| |||||||||||
Sbjct 270 TTCGAGA-GCAGGCGATGGTGGAAG-CCAACTCATTGTCCCGA-AAGGGAAATGGCTAAC 326
Query 347 CGGAAGTTTCAACCTCACCAGCCATTTTACTTTGTTCATCCAAA-AAGGTGCAACTATTC 405
|||||||||||||||||| ||||||||||||||| |||| ||| |||||||||| || |
Sbjct 327 CGGAAGTTTCAACCTCACGAGCCATTTTACTTTGCACATC-AAAGAAGGTGCAACCATCC 385
Query 406 TTGCTTCTCAGGATGAATCTGAATATCC-AGTGGTTGCACCT-TTGCCATCATACGGACA 463
||||||||||||| |||||||||||||| | || || || | ||||| |||||| |
Sbjct 386 TTGCTTCTCAGGACGAATCTGAATATCCCA-TGCTT-CAAGTGTTGCCCTCATAC--A-- 439
Query 464 AGGAAGAGATGCAGCAGGACCAACATTTGCTAGTCTAATCT-CTGGCA-CAAACCTAACT 521
| | || | || ||| ||||||||| |||||| | || | ||| ||||||
Sbjct 440 -G-A-GATA--CA--AGG-------TTTGCTAGTTTAATCTAC-GGAAGCAA-CCTAACC 483
Query 522 GATGTTGTTATCACCGGTAACAACGGAACGATCAACGGGCAAGGAAAGT-ACTGGTGGGT 580
|||||||||||| ||||| |||| || || ||||| || ||||| |||| | |||||||
Sbjct 484 GATGTTGTTATCGCCGGTGACAAAGGGACAATCAATGGACAAGGGAAGTCA-TGGTGGGC 542
Query 581 GAAGTATCGCAGTGGTGGATTT-AAGGGGATCACAA-GACCT-TACACAATCGAGAT-CA 636
|||||||| | |||||| ||| ||| || |||| |||| | ||||||||| ||
Sbjct 543 AAAGTATCGAAATGGTGG-TTTCAAGTCCAT-ACAAAGACCAATGTT-AATCGAGATTCA 599
Query 637 -TCTTCTCTCAAAACGTTCAGATCTCGAACATCACAATC-ATCGATTCGCCTGCATG-GA 693
|| |||| |||| |||||||| ||||| |||| | | |||||||| || | ||| |
Sbjct 600 ATC--CTCTGAAAATGTTCAGATTTCGAATATCA-ATTTGATCGATTCTCC-G-ATGTGG 654
Query 694 A-TATTCATCCTGTATATTGCAACAATGTCATCGTCAAAGGCGTTACCAT-TCTTGCTCC 751
| ||| |||||||| ||||||| || |||||| | ||||| |||| || ||| |||
Sbjct 655 AGTATCCATCCTGTGTATTGCAGGAACGTCATCATTAAAGGTGTTAAAATCTCTAA-TCC 713
Query 752 TATCGATTCTC-CTAATACCGATGGAATCAA 781
||||||||| | |||| || |||||||||||
Sbjct 714 TATCGATTC-CGCTAACACGGATGGAATCAA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5