BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23910.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481248 jgi|Araly1|481248|fgenesh2_kg.4__308__AT2G23910.1 1703 0.0
Ahg491705 jgi|Araly1|491705|fgenesh2_kg.7__1138__AT4G30470.1 959 0.0
> Ahg481248 jgi|Araly1|481248|fgenesh2_kg.4__308__AT2G23910.1
Length=1126
Score = 1703 bits (922), Expect = 0.0
Identities = 1049/1108 (95%), Gaps = 17/1108 (2%)
Strand=Plus/Plus
Query 63 AAACTGATGAATCAAGAAAAGACCATTTCTTGTTGTTGTGTTCTTGATGCTTCCACTTAT 122
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAACTGATGAATCAAGAAAAGCCCATTTCTTGTTGCTGTGTTCTTGATGCTTCCACTTAT 60
Query 123 GTTGGTTTCTGGATTCTCAAGAGATTGCTCACTAGAGGTTACTCTGTTCACGCAGCTATC 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGGTTTCTGGATTCTCAAGAGATTGCTCACTAGAGGTTACTCTGTTCACGCAGCTATC 120
Query 183 CGTAAAAACGGGGAGAGTGTGCTTGAAGAGAAAATCAGAGACATGGAAGCTAACGAAGAG 242
|||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct 121 CGTAAAAACGGGGATAGTGTGCTTGAAGAGGAAATTAGAGACATGGAAGCTAAAGAAGAG 180
Query 243 AGATTAGAGGTTTATGATGTGGATGTGTTAGATTACCAAAGTATCCTCATTTCTCTCAAC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGATTAGAGGTTTATGATGTGGATGTGTTAGATTACCAAAGTATCCTCATTTCTCTCAAC 240
Query 303 AATTGTAATGCTGTCTTCTGTTGTTTGGATAATCCTGAAGGGTACGATGAGGAGAAGGAA 362
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 241 AATTGTAATGCTGTGTTCTGTTGTTTGGACAATCCTGAAGGGTATGATGAGGAGAAGGAA 300
Query 363 GTGGATTTGGAGGTGAGAGGAGCTATTAATGTGGTGGAAGCATGTGCAAGAACAGAGAGT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGATTTGGAGGTGAGAGGAGCTATTAATGTGGTGGAAGCATGTGCAAGAACAGAGAGT 360
Query 423 ATAGAGAAGATTGTGTTCTCATCTTCGTTAACTGCTGCAATTTGGAGAGATAACATTGGA 482
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 361 ATAGAGAAGATTGTGTTCTCTTCTTCATTAACTGCTGCAATTTGGAGAGATAACATTGGA 420
Query 483 ACTCAGAAAGATGTTGATGAGAAGTGTTGGAGTGATCTTGACTTCTGTCTCaaaaaaaaG 542
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 421 ACACAGAAAGATGTTGATGAGAAGTGTTGGAGTGATCTTGACTTTTGTCTAAAAAAAAAG 480
Query 543 TTGTGGCATGCTCTTGCGAAGACACAGTCCGAGAAGGCAGCTTGGGCATTAGCCATGGAT 602
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TTGTGGCATGCTCTTGCGAAGACACAGTCCGAGAAGGCAGCGTGGGCATTAGCCATGGAT 540
Query 603 CGTATGGTCAACATGGTTTCGGTTAACCCGGGCCTCATCGTTGGACCATCAGTGGCTCAA 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 CGTATGGTCAACATGGTTTCGGTTAACCCGGGCCTCATCGTTGGACCATCAGTGGCTCTA 600
Query 663 CACAACCCAAGACCGACCATGTCTTACCTCAAAGGAGCTGCACAAATGTATGAGAACGGT 722
|||||||| ||||| | | |||||||||||||| || ||||||| ||||||||||| |||
Sbjct 601 CACAACCCTAGACCCA-C-TGTCTTACCTCAAA-GATCTGCACAGATGTATGAGAATGGT 657
Query 723 GTGTTAGCGTACGTAGATGTTGAATTTGTAGCGGATGTTCACATTCGAGCATTCGAGGAT 782
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 658 GTGTTAGCATACGTAGATGTTGAATTTGTTGCGGATGTTCACATTCGAGCATTCGAAGAT 717
Query 783 ACTTCGGCTTGTGGTAGATACTTTTGCTTCAACCAAATTGTGAACACGGAAGAAGAAGCT 842
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 ACTTCGGCTTGCGGTAGATACTTTTGCTTCAACCAAATTGTGAATACGGAAGAAGAAGCC 777
Query 843 CTCAAGCTTGTACAAACTCTATCTCCTTTAATACCTATGCCACCAAGGCATGAGAAAGAA 902
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 CTCAAGCTTGTACAAACTCTATCTCCTTTAATACCTATGCCACCAAGGTATGAGAAAGAG 837
Query 903 ATGCAAGGAAGTGAAGTTTATGAAGAGAGATTGAGAAACAAGAAACTAAACAAGCTGGTG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGCAAGGAAGTGAAGTTTATGAAGAGAGATTGAGAAACAAGAAACTAAACAAGCTGGTG 897
Query 963 GAAGCTGGATTTGCTTGTTAATTACATGAAGAGAGATGTTATAAATTAAAGGGCAAGAAA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAAGCTGGATTTGCTTGTTAATTACATGAAGAGAGATGTTATAAATTAAAGGGCAAGAAA 957
Query 1023 ATAACAAAGAAATTTTATAGTAAGAGTTGTTTGtttacttatttttttaattattgtact 1082
| | ||||| | ||||| | ||||||||||||||| ||||| |||||||| |
Sbjct 958 TT------G---TTTTA-A-TAAGAATAGTTTGTTTACTTATTGTTTTA-TTATTGTAAT 1005
Query 1083 ctcaattcagtattttatatatctatattttattttattttGAAATGAAAGGAAAATATG 1142
|||| |||| |||||||||||| ||| |||| | | | || |||||||||||||||||||
Sbjct 1006 CTCAGTTCAATATTTTATATATTTAT-TTTTCTGTAACTT-GAAATGAAAGGAAAATATG 1063
Query 1143 TGTTACTCATAGAAAAGTGAGTAttttt 1170
||||||||||||||||||||||||||||
Sbjct 1064 TGTTACTCATAGAAAAGTGAGTATTTTT 1091
> Ahg491705 jgi|Araly1|491705|fgenesh2_kg.7__1138__AT4G30470.1
Length=1340
Score = 959 bits (519), Expect = 0.0
Identities = 800/935 (86%), Gaps = 22/935 (2%)
Strand=Plus/Plus
Query 58 CAACAAAAC-TGATGAATCAAGAAAAGACCATTTCTTGTTGTTGTGTTCTTGATGCTTCC 116
|||| |||| | ||| |||| || ||| ||| ||||||||| || |||||||||||||||
Sbjct 154 CAAC-AAACAT-ATGGATCACGACAAGTCCACTTCTTGTTGCTGCGTTCTTGATGCTTCC 211
Query 117 ACTTATGTTGGTTTCTGGATTCTCAAGAGATTGCTCA-CTAGAGGTTACTCTGTTCACGC 175
|||||||||||||||||||||||||||| |||||| | | ||||| ||||||||||||||
Sbjct 212 ACTTATGTTGGTTTCTGGATTCTCAAGAAATTGCTTAGC-AGAGGATACTCTGTTCACGC 270
Query 176 AGCTATCCGTAAAAACGGGGAGAGTGTGCTTGAAGAGAAAATCAGAGACATGGAAGCTAA 235
|||||| |||| |||||||||||||| |||| |||| |||||||| |||||| | ||
Sbjct 271 AGCTATTCGTAGAAACGGGGAGAGTGAAATTGAGGAGATGATCAGAGAGATGGAAAC-AA 329
Query 236 C-GAAGAGAGATTAGAGGTTTATGATGTGGATGTGTTAGATTACCAAAGTATCCTCATTT 294
| ||||||||||||| ||| || ||||| |||||||| ||||| ||||| || || | |
Sbjct 330 CAGAAGAGAGATTAGTGGTGTACGATGTAGATGTGTTGGATTATCAAAGCATACTTGTCT 389
Query 295 CTCTCAACA-ATTGTAATGCTGTCTTCTGTTGTTTGGATAATCCTGAAGGGTACGATGAG 353
||||||| | || |||| | |||||||||||| || |||| ||||||||||||||||||
Sbjct 390 CTCTCAAGACAT-GTAACGTTGTCTTCTGTTGCTTAGATAGCCCTGAAGGGTACGATGAG 448
Query 354 GAGAAGGAAGTGGATTTGGAGGTGAGAGGAGCTATTAATGTGGTGGAAGCATGTGCAAGA 413
| | ||| ||||||||||| ||||||||||| || ||||||||||||||||||| ||||
Sbjct 449 -A-A-GGAGGTGGATTTGGAAGTGAGAGGAGCCATCAATGTGGTGGAAGCATGTGGAAGA 505
Query 414 ACAGAGAGTATAGAGAAGATTGTGTTCTCATCTTCGTTAACTGCTGCAATTTGGAGAGAT 473
||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 506 ACAGAGAGTATAGAGAAGATTGTGTTCTCTTCTTCGTTAACAGCTTCAATTTGGAGAGAC 565
Query 474 AACATTGGAACTCAGAAAGATGTTGATGAGAAGTGTTGGAGTGATCTTGACTTCTGTCTC 533
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| |
Sbjct 566 AACATTGGAACTCAGAAGGATGTTGATGAGAAGTGTTGGAGTGACCAAGACTTCTGTCGC 625
Query 534 aaaaaaaaGTTGTGGCATGCTCTTG-CGAAGACACAGTCCGAGAAGGCAGCTTGGGCATT 592
|| || |||||||||||||| ||| | |||| ||| ||||| ||||||||||||||
Sbjct 626 AACAAGAAGTTGTGGCATGCA-TTGGCAAAGATGTTGTCAGAGAAAGCAGCTTGGGCATT 684
Query 593 AGCCATGGATCGTATGG-TCAACATGGTTTCGGTTAACCCGGGCCTCATCGTTGGACCAT 651
||||||||| |||| || |||| ||||| || | ||||| || || ||||| |||||||
Sbjct 685 AGCCATGGACCGTA-GGCTCAATATGGTCTCTATCAACCCTGGTCTTATCGTCGGACCAT 743
Query 652 CAGTGGCTCAACACAACCCAAGACCGACCATGTCTTACCTCAAAGGAGCTGCACAAATGT 711
| || || ||||||||| | || || |||||||| |||||||||||||||||||||||||
Sbjct 744 CGGTCGCACAACACAACGCTAGGCCCACCATGTCATACCTCAAAGGAGCTGCACAAATGT 803
Query 712 ATGAGAACGGTGTGTTAGCGTACGTAGATGTTGAA-TTTGTAGCGGATGTTCACATTCGA 770
||||||| |||||||||||||||||||| ||| || ||| ||||||||||||| ||| ||
Sbjct 804 ATGAGAATGGTGTGTTAGCGTACGTAGACGTT-AAGTTTTTAGCGGATGTTCATATTAGA 862
Query 771 GCATTCGAGGATACTTCGGCTTGTGGTAGATACTTT-TGCTTCAACCAAATTGTGAACAC 829
|||||||||||| ||||||||| ||| |||| ||| |||||||||||||| || |||||
Sbjct 863 GCATTCGAGGATGTTTCGGCTTGCGGTCGATA-TTTCTGCTTCAACCAAATCGTCAACAC 921
Query 830 GGAAGAAGAAGCTCTCAAGCTTGTACAAACTCTA-TCTCCTTTAATACCTATGCCACCAA 888
||||||||||||||||||||||| | | || |||||||| |||||||||||||| |
Sbjct 922 AGAAGAAGAAGCTCTCAAGCTTGTGGAG-CGCTTGTCTCCTTTGATACCTATGCCACCGA 980
Query 889 GGCATGAGAAAGAAATGCAAGGAAGTGAAGTTTATGAAGAGAGATTGAGAAACAAGAAAC 948
|| ||||||| || ||||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 981 GGTATGAGAATGAGATGCACGGAAGTGAAGTTTACGAAGAAAGATTAAGGAACAATAAAT 1040
Query 949 TAAACAAGCTGGTGGAAGCTGGATTTGCTTGTTAA 983
||| ||||||||| |||||||| | ||||||||||
Sbjct 1041 TAAGCAAGCTGGTAGAAGCTGGCTCTGCTTGTTAA 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5