BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G23930.1

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932393 jgi|Araly1|932393|scaffold_400381.1                        442    1e-123
  Ahg478489 jgi|Araly1|478489|fgenesh2_kg.3__1190__AT3G11500.1         329    1e-89 


> Ahg932393 jgi|Araly1|932393|scaffold_400381.1
Length=286

 Score =  442 bits (239),  Expect = 1e-123
 Identities = 267/281 (95%), Gaps = 0/281 (0%)
 Strand=Plus/Plus

Query  83   TCAATTCCGATTTTGCAACTATGAGTCGTTCAGGTCAGCCTCCGGATCTTAAGAAGTACA  142
            |||||||||||| |||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct  3    TCAATTCCGATTCTGCAACCATGAGTCGGTCAGGACAGCCTCCGGATCTCAAGAAGTACA  62

Query  143  TGGATAAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTG  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   TGGATAAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTG  122

Query  203  GGTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAGGTGAACGGTAACGACA  262
            | ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  123  GCTTTGACCAGTTTATGAATCTTGTTGTGGATAACACTGTCGAGGTGAACGGTAATGACA  182

Query  263  AAACCGACATCGGGATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTG  322
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  AAACCGACATCGGTATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTG  242

Query  323  AACCAGTGGGCAGATCTTCTTAGCTCGTTATATTCATTGGT  363
            |||| |||||||||||||||||||||||||||| ||| |||
Sbjct  243  AACCTGTGGGCAGATCTTCTTAGCTCGTTATATGCATCGGT  283


> Ahg478489 jgi|Araly1|478489|fgenesh2_kg.3__1190__AT3G11500.1
Length=436

 Score =  329 bits (178),  Expect = 1e-89
 Identities = 228/253 (90%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  88   TCCGATTTTGCAACTATGAGTCGTTCAGGTCAGCCTCCGGATCTTAAGAAGTACATGGAT  147
            ||||||| ||||| ||||||||| || ||||||||||||||||| |||||||||||||| 
Sbjct  65   TCCGATTCTGCAAGTATGAGTCGATCTGGTCAGCCTCCGGATCTCAAGAAGTACATGGAC  124

Query  148  AAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTGGGTTT  207
            ||||| |||||||| ||||||||||| ||||||||||||  ||||||||| |||||||||
Sbjct  125  AAGAAACTCCAAATTAAGCTTAATGCCAACCGAATGGTTGTTGGAACTCTCCGTGGGTTT  184

Query  208  GATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAGGTGAACGGTAACGACAAAACC  267
            |||||||||||||||||||||||||||||||||||||| || || ||| | |||||||| 
Sbjct  185  GATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAAAACT  244

Query  268  GACATCGGGATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCA  327
            ||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct  245  GACATTGGGATGGTGGTTATAAGAGGAAACAGCATTGTCACCGTTGAAGCTCTCGAACCA  304

Query  328  GTGGGCAGATCTT  340
            || || |||||||
Sbjct  305  GTTGGAAGATCTT  317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20413240115


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5