BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23940.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932394 jgi|Araly1|932394|scaffold_400382.1 896 0.0
Ahg481251 jgi|Araly1|481251|fgenesh2_kg.4__311__AT2G23945.1 159 3e-38
Ahg935507 jgi|Araly1|935507|scaffold_403495.1 60.2 3e-08
> Ahg932394 jgi|Araly1|932394|scaffold_400382.1
Length=571
Score = 896 bits (485), Expect = 0.0
Identities = 538/564 (95%), Gaps = 2/564 (0%)
Strand=Plus/Plus
Query 214 GCTAAAATCCGAGATTAAGAATGGCGAATCAAGGAGCGAAGAAACGAAAGGAAGAGAACG 273
|||| |||| |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1 GCTAGAATCGGAGATTAAGAATGGCGAATCAAGGAGCGAAAAAACGAAAAGAAGAGAACG 60
Query 274 CCA-AACACATGGCTAAGCTCCGTCGTATCATCATCGCTTCCAATGCTGTGTATTTCGTT 332
|| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 61 -CACGGCACATGGCTAAGCTCCGTCGTCTCATCATCGCTTCCAATGTTGTGTACTTCGTT 119
Query 333 GTGAGGATGTTGATTTTCTACTCAAGCTTTACTTGGAAACATTGGATCGGTTTAGTGATA 392
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 GTGAGGATGTTGATTTTCTACTCAAGCTTTACTTGGAAACATTGGATCGGCTTAGTGATA 179
Query 393 ACTTCGCTGGCTTACGCGTTTCCTTATAAGCAGCTTGATCAAATGGCTAAACCTAGTGTT 452
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 180 ACTTCGCTGGCTTACGCGTTTCCATATAAGCAGCTTGAACAAATGGCAAAACCTAGTGTT 239
Query 453 ACTGATGATGGTGAGCTTATTGATGGTGGATTTGACATGACCACTGGTGGAATCTGCGGA 512
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 ACTGATGATGGTGAGCTTCTTGATGGTGGATTTGACATGACCACTGGTGGAATCTGTGGA 299
Query 513 TATTTGCACGATGTCATCTATATCACTTGCTTTGTTCAGCTAGCTTCCATCATCACTGGG 572
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 300 TATTTGCATGATGTAATCTATATCACTTGCTTTGTTCAGCTAGCTTCTATCATCTCTGGG 359
Query 573 AAGTTTTGGTACACGTATCTTGTGATTCCTGCGTTTGGAGTGTATAAAGCTTCTGGTCTT 632
||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 360 AAGTTTTGGTATACGTATCTAGTGATTCCTGCATTTGGAGTGTATAAAGCGTCTGGTCTT 419
Query 633 ATTCGAGGATTCATGTCACAAGGTTCAGAGGGAGGTGTGGAAGATGAAAAGTCTCGTAAA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTCGAGGATTCATGTCACAAGGTTCAGAGGGAGGTGTGGAAGATGAAAAGTCTCGTAAA 479
Query 693 AAGAGAGAGAAGATGGAGAGGAAAGCTTCGAGAGGGCAAGTCGTCAAGACGAGAACAAGA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 480 AAGAGAGAGAAGATGGAGAGGAAAGCTTCGAGAGGGCAAGTCGTCAAGACGAGGACAAGA 539
Query 753 TGAATGTGTTGTTATAGAATACAA 776
||||||||||||||||||||||||
Sbjct 540 TGAATGTGTTGTTATAGAATACAA 563
> Ahg481251 jgi|Araly1|481251|fgenesh2_kg.4__311__AT2G23945.1
Length=1291
Score = 159 bits (86), Expect = 3e-38
Identities = 96/101 (95%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 889 ACTTTGATGGGGAATAGTCATCGAGTTGAACACAGTCGATTCTCTGGAGATAGATGtttt 948
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1291 ACTTTGATGGGGAATAGTCATCGAGTAGAACACAGTCGATTCTCTGGAGATAGATGTTTC 1232
Query 949 tttCTTTGAGGTCGTAACCAATATTATAGTATTGTTGAGCC 989
||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1231 TTTCTTTAAGGTCGTAAGCAATATTGTAGTATTGTTGAGCC 1191
> Ahg935507 jgi|Araly1|935507|scaffold_403495.1
Length=912
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 51 TCCGTGGATTGTCAAGAACGCAGATCCGAAAG 82
||||||||||||||||||||||||||||||||
Sbjct 834 TCCGTGGATTGTCAAGAACGCAGATCCGAAAG 865
Score = 56.5 bits (30), Expect = 4e-07
Identities = 34/36 (94%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 18 CAGCTTCTTGTTAAGGATCCCTCAAAACAACTTTCC 53
|||||||||||||||||||||||||||| ||| |||
Sbjct 778 CAGCTTCTTGTTAAGGATCCCTCAAAACGACTCTCC 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5