BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23945.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481251 jgi|Araly1|481251|fgenesh2_kg.4__311__AT2G23945.1 1953 0.0
> Ahg481251 jgi|Araly1|481251|fgenesh2_kg.4__311__AT2G23945.1
Length=1291
Score = 1953 bits (1057), Expect = 0.0
Identities = 1217/1295 (94%), Gaps = 8/1295 (1%)
Strand=Plus/Plus
Query 85 ATGGCGATGAAGCTGATACACCGTGAATCAGTGGCCCGTCTCAACCCAAATGCTCGAGTT 144
|||||||||||| |||||| ||||||| |||||| ||||| ||||||| |||||||||||
Sbjct 1 ATGGCGATGAAGTTGATACGCCGTGAAACAGTGGTCCGTCACAACCCAGATGCTCGAGTT 60
Query 145 CCGATCACTCCAGAAGACCATATCAAACACCTGACAGATATTTCATCAGCCCGGTTTAAG 204
||| |||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||
Sbjct 61 CCGGTCACTCCAGAAGACCATATCCAACACATGACCGATATTTCATCAGCCAGGTTTAAG 120
Query 205 TATCTACAGAATTCGATTGACAAAGAGCTAGGCAGCAGCAATTTCCAAGTTGATGTGGAA 264
||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 121 TATTTACAGAATTCGATTGTTAAAGAGCTAGGCAGCAGTGATTTCCAAGTTGATGTGCAT 180
Query 265 CAAGCAATCAAAACATCATTGTTTCTTGTGAATTTCTCCGTAGGACAGCCACCGGTGCCG 324
||||||||||| |||||||||||| |||| |||||||| ||||||||||| ||||| |||
Sbjct 181 CAAGCAATCAAGACATCATTGTTTTTTGTAAATTTCTCGGTAGGACAGCCTCCGGTACCG 240
Query 325 CAGTTAACTATCATGGATACTGGAAGCTCACTTTTATGGATCCAATGTCAACCCTGCAAA 384
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CAGTTCACTATCATGGATACTGGAAGCTCACTTTTATGGATCCAATGTCATCCCTGCAAA 300
Query 385 CACTGCTCATCAGATCATATGATCCATCCTGTCTTCAATCCAGCATTGTCTTCAACATTT 444
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACTGCTCATCAAATCATATGATCCATCCTGTCTTCAATCCAGCATTGTCTTCAACATTT 360
Query 445 GTAGAGTGTTCCTGCGATGATCGTTTTTGCAGGTATGCACCAAACGGACATTGCGGCTCA 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GTAGAGTGTTCCTGCGATGATCGTTTTTGCAGGTATGCACCAAACGGACATTGC---TCA 417
Query 505 TCAAACAAGTGTGTTTACGAACAAGTGTATATAAGCGGCACTGGGTCAAAAGGCGTTCTA 564
||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 418 TCAAACAAGTGCGTTTATGAACAGGTGTATATAAGCGGCACTGGCTCAAAAGGCGTTCTA 477
Query 565 GCTAAAGAACGGTTAACCTTCACAACACCTAACGGTAACACTGTTGTGACCCAACCTATT 624
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 478 GCTAAAGAACGGTTGACCTTCACAACACCTAATGGAAACACTGTTGTGACCCAACCTATT 537
Query 625 GCTTTTGGGTGTGGCTACGAGAATGGAGAGCAGTTGGAAAGTCATTTCACTGGTATTTTG 684
|| |||||||||||| | |||||||||||||||||||| ||| | |||||||||||||||
Sbjct 538 GCCTTTGGGTGTGGCCATGAGAATGGAGAGCAGTTGGAGAGTGAGTTCACTGGTATTTTG 597
Query 685 GGGTTAGGAGCCAAACCCACATCACTTGCCGTACAGCTTGGGTCTAAATTCTCTTACTGC 744
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 598 GGTTTAGGAGCCAAACCCACATCGCTTGCTGTACAGCTTGGGTCTAAATTCTCTTACTGC 657
Query 745 ATTGGTGATTTAGCTAACAAAAACTACGGTTACAATCAGCTGGTTCTGGGAGAGGACGCG 804
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 ATCGGTGATTTAGCTAACAAAAACTACGGTTACAATCAGCTGGTTCTGGGTGAGGACGCG 717
Query 805 GATATTCTCGGCGATCCAACACCCATTGAATTTGAGACAGAGAATAGTATCTACTATATG 864
|||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 GATATTTTAGGGGATCCAACACCCATTGAATTTGAGACAGAGAATGGTATCTACTATATG 777
Query 865 AATCTAGAAGGGATTAGTGTTGGGGATACACAACTCAATATCGAACCAGTGGTATTCAAA 924
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 AATCTTGAAGGGATTAGTGTTGGGGATAAACAACTCAATATCGAACCAGTGGTATTCAAA 837
Query 925 AGAAGAGGACCAAGAACAGGGGTCATACTAGACTCGGGCACACTCTACACTTGGCTAGCA 984
|||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 838 AGAAGAGGGTCAAGAACAGGGGTCATACTCGACACGGGCACACTCTACACTTGGCTAGCA 897
Query 985 GATATAGCCTACAGAGAACTCTACAATGAAATAAAATCCATTCTGGATCCAAAATTAGAG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GATATAGCCTACAGAGAACTCTACAATGAAATAAAATCCATTCTGGATCCAAAATTAGAG 957
Query 1045 AGATTCTGGTTTAGAGACTTCTTGTGCTACCATGGGAGAGTGAGCGAAGAGCTCATAGGC 1104
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 958 AGGTTCTGGTTTAGAGACTTCTTGTGCTACCATGGGAGAGTGAACGAAGAGCTCATAGGC 1017
Query 1105 TTCCCTGTGGTGACATTTCATTTTGCAGGCGGAGCTGAGCTGGCTATGGAGGCCACAAGC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTCCCTGTGGTGACATTTCATTTTGCAGGCGGAGCTGAGCTGGCTATGGAGGCCACAAGC 1077
Query 1165 ATGTTTTATCCATT-ATCAGAACCGAATACGT-T--TAACGTCTTTTGTATGTCAGTGAA 1220
|||||||||||| | | ||||| || |||||| | |||||| ||||||||||||||||
Sbjct 1078 ATGTTTTATCCAATGA-CAGAATCGGATACGTATCATAACGTATTTTGTATGTCAGTGAG 1136
Query 1221 GCCAACCAAAGAACATGGAGGGGAATATAAGGAATTCACAGCTATAGGGCTAATGGCTCA 1280
|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1137 GCCAACCACAGAACATGGAGGGGAATATAAGGATTTCACAGCTATTGGGCTAATGGCTCA 1196
Query 1281 ACAATACTATAATATTGGTTACGACCTCAAAGaaaaaaaCATCTATCTCCAGAGAATCGA 1340
||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1197 ACAATACTACAATATTGCTTACGACCTTAAAGAAAGAAACATCTATCTCCAGAGAATCGA 1256
Query 1341 CTGTGTTCAACTCGATGACTATTCCCCATCAAAGT 1375
|||||||| ||||||||||||||||||||||||||
Sbjct 1257 CTGTGTTCTACTCGATGACTATTCCCCATCAAAGT 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5