BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G23945.1 Length=1377 Score E Sequences producing significant alignments: (Bits) Value Ahg481251 jgi|Araly1|481251|fgenesh2_kg.4__311__AT2G23945.1 1953 0.0 > Ahg481251 jgi|Araly1|481251|fgenesh2_kg.4__311__AT2G23945.1 Length=1291 Score = 1953 bits (1057), Expect = 0.0 Identities = 1217/1295 (94%), Gaps = 8/1295 (1%) Strand=Plus/Plus Query 85 ATGGCGATGAAGCTGATACACCGTGAATCAGTGGCCCGTCTCAACCCAAATGCTCGAGTT 144 |||||||||||| |||||| ||||||| |||||| ||||| ||||||| ||||||||||| Sbjct 1 ATGGCGATGAAGTTGATACGCCGTGAAACAGTGGTCCGTCACAACCCAGATGCTCGAGTT 60 Query 145 CCGATCACTCCAGAAGACCATATCAAACACCTGACAGATATTTCATCAGCCCGGTTTAAG 204 ||| |||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||| Sbjct 61 CCGGTCACTCCAGAAGACCATATCCAACACATGACCGATATTTCATCAGCCAGGTTTAAG 120 Query 205 TATCTACAGAATTCGATTGACAAAGAGCTAGGCAGCAGCAATTTCCAAGTTGATGTGGAA 264 ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct 121 TATTTACAGAATTCGATTGTTAAAGAGCTAGGCAGCAGTGATTTCCAAGTTGATGTGCAT 180 Query 265 CAAGCAATCAAAACATCATTGTTTCTTGTGAATTTCTCCGTAGGACAGCCACCGGTGCCG 324 ||||||||||| |||||||||||| |||| |||||||| ||||||||||| ||||| ||| Sbjct 181 CAAGCAATCAAGACATCATTGTTTTTTGTAAATTTCTCGGTAGGACAGCCTCCGGTACCG 240 Query 325 CAGTTAACTATCATGGATACTGGAAGCTCACTTTTATGGATCCAATGTCAACCCTGCAAA 384 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 CAGTTCACTATCATGGATACTGGAAGCTCACTTTTATGGATCCAATGTCATCCCTGCAAA 300 Query 385 CACTGCTCATCAGATCATATGATCCATCCTGTCTTCAATCCAGCATTGTCTTCAACATTT 444 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CACTGCTCATCAAATCATATGATCCATCCTGTCTTCAATCCAGCATTGTCTTCAACATTT 360 Query 445 GTAGAGTGTTCCTGCGATGATCGTTTTTGCAGGTATGCACCAAACGGACATTGCGGCTCA 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 GTAGAGTGTTCCTGCGATGATCGTTTTTGCAGGTATGCACCAAACGGACATTGC---TCA 417 Query 505 TCAAACAAGTGTGTTTACGAACAAGTGTATATAAGCGGCACTGGGTCAAAAGGCGTTCTA 564 ||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 418 TCAAACAAGTGCGTTTATGAACAGGTGTATATAAGCGGCACTGGCTCAAAAGGCGTTCTA 477 Query 565 GCTAAAGAACGGTTAACCTTCACAACACCTAACGGTAACACTGTTGTGACCCAACCTATT 624 |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| Sbjct 478 GCTAAAGAACGGTTGACCTTCACAACACCTAATGGAAACACTGTTGTGACCCAACCTATT 537 Query 625 GCTTTTGGGTGTGGCTACGAGAATGGAGAGCAGTTGGAAAGTCATTTCACTGGTATTTTG 684 || |||||||||||| | |||||||||||||||||||| ||| | ||||||||||||||| Sbjct 538 GCCTTTGGGTGTGGCCATGAGAATGGAGAGCAGTTGGAGAGTGAGTTCACTGGTATTTTG 597 Query 685 GGGTTAGGAGCCAAACCCACATCACTTGCCGTACAGCTTGGGTCTAAATTCTCTTACTGC 744 || |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 598 GGTTTAGGAGCCAAACCCACATCGCTTGCTGTACAGCTTGGGTCTAAATTCTCTTACTGC 657 Query 745 ATTGGTGATTTAGCTAACAAAAACTACGGTTACAATCAGCTGGTTCTGGGAGAGGACGCG 804 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 658 ATCGGTGATTTAGCTAACAAAAACTACGGTTACAATCAGCTGGTTCTGGGTGAGGACGCG 717 Query 805 GATATTCTCGGCGATCCAACACCCATTGAATTTGAGACAGAGAATAGTATCTACTATATG 864 |||||| | || ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 718 GATATTTTAGGGGATCCAACACCCATTGAATTTGAGACAGAGAATGGTATCTACTATATG 777 Query 865 AATCTAGAAGGGATTAGTGTTGGGGATACACAACTCAATATCGAACCAGTGGTATTCAAA 924 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 778 AATCTTGAAGGGATTAGTGTTGGGGATAAACAACTCAATATCGAACCAGTGGTATTCAAA 837 Query 925 AGAAGAGGACCAAGAACAGGGGTCATACTAGACTCGGGCACACTCTACACTTGGCTAGCA 984 |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 838 AGAAGAGGGTCAAGAACAGGGGTCATACTCGACACGGGCACACTCTACACTTGGCTAGCA 897 Query 985 GATATAGCCTACAGAGAACTCTACAATGAAATAAAATCCATTCTGGATCCAAAATTAGAG 1044 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GATATAGCCTACAGAGAACTCTACAATGAAATAAAATCCATTCTGGATCCAAAATTAGAG 957 Query 1045 AGATTCTGGTTTAGAGACTTCTTGTGCTACCATGGGAGAGTGAGCGAAGAGCTCATAGGC 1104 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 958 AGGTTCTGGTTTAGAGACTTCTTGTGCTACCATGGGAGAGTGAACGAAGAGCTCATAGGC 1017 Query 1105 TTCCCTGTGGTGACATTTCATTTTGCAGGCGGAGCTGAGCTGGCTATGGAGGCCACAAGC 1164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TTCCCTGTGGTGACATTTCATTTTGCAGGCGGAGCTGAGCTGGCTATGGAGGCCACAAGC 1077 Query 1165 ATGTTTTATCCATT-ATCAGAACCGAATACGT-T--TAACGTCTTTTGTATGTCAGTGAA 1220 |||||||||||| | | ||||| || |||||| | |||||| |||||||||||||||| Sbjct 1078 ATGTTTTATCCAATGA-CAGAATCGGATACGTATCATAACGTATTTTGTATGTCAGTGAG 1136 Query 1221 GCCAACCAAAGAACATGGAGGGGAATATAAGGAATTCACAGCTATAGGGCTAATGGCTCA 1280 |||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1137 GCCAACCACAGAACATGGAGGGGAATATAAGGATTTCACAGCTATTGGGCTAATGGCTCA 1196 Query 1281 ACAATACTATAATATTGGTTACGACCTCAAAGaaaaaaaCATCTATCTCCAGAGAATCGA 1340 ||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||| Sbjct 1197 ACAATACTACAATATTGCTTACGACCTTAAAGAAAGAAACATCTATCTCCAGAGAATCGA 1256 Query 1341 CTGTGTTCAACTCGATGACTATTCCCCATCAAAGT 1375 |||||||| |||||||||||||||||||||||||| Sbjct 1257 CTGTGTTCTACTCGATGACTATTCCCCATCAAAGT 1291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51542183784 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5