BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23970.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899717 jgi|Araly1|899717|Al_scaffold_0004_367 1247 0.0
Ahg951752 jgi|Araly1|951752|scaffold_13800001.1 521 2e-147
> Ahg899717 jgi|Araly1|899717|Al_scaffold_0004_367
Length=756
Score = 1247 bits (675), Expect = 0.0
Identities = 729/756 (96%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 1 ATGGTTAATGAGCAAAAGAGATTTGCTTTGTTTCTTGCTACGAGCGATTCAACGTTCGTG 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATGGTTAATGAGCAAAAGAGATTTGCTTTGTTTCTTGCCACAAGCGATTCAACGTTCGTG 60
Query 61 AAGAAAGCGTATGGAGGCTATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGGTGAG 120
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAAAACGTATGGAGGATATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGGTGAG 120
Query 121 CAATGGGATCTGTTTCGAGTGATCGACGGCGAGTTTCCTGACGATAAGGATCTGGATAAG 180
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 121 CAATGGGATCTGTTTCGAGTGATCGACGGTGAGTTTCCGGACGATAAGGATCTGGATAAG 180
Query 181 TACGATGGTTTTGTTATTAGTGGAAGCCTTAACGATGCTTTTGGTGATGATGATTGGATC 240
||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 181 TACGACGGTTTTGTTATCAGTGGAAGCCTTCATGATGCTTTTGGTGATGATGATTGGATC 240
Query 241 GTTAAGCTTTGTTCTCTTTGCCAAAAGCTTGACGACATGAAGAAGAAGGTTCTTGGTATC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GTTAAGCTTTGTTCTCTTTGCCAAAAACTTGACGACATGAAGAAGAAGGTTCTTGGTATC 300
Query 301 TGCTTTGGCCACCAGATACTAAGTAGAATCAAAGGAGGGAAAGTCGGAAGGGCGAGTAGA 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 301 TGCTTTGGCCACCAGATACTAAGTAGAATCAAAGGAGGGAAAATCGGAAGGGCGAGTATA 360
Query 361 GGTTTGGATATGGGACTAAGAAGCATAACAATGGTTACAGACGCGGTGAAGCCAGGTGGT 420
||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 361 GGTTTGGATATGGGACTAAGAAGCATAACAATGGTTAAAGACGCGGTGAAACCGGGTGGT 420
Query 421 TACTTTGGAAGCCAGATTCCGAAATCACTAGCCATTATAAAATGCCATCAAGATGAAGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TACTTTGGAAGCCAGATTCCGAAATCACTAGCCATTATAAAATGCCATCAAGATGAAGTT 480
Query 481 CTTGAACTCCCTGAATCAGCCACATTGCTTGCTTATTCAGACAAATACAACGTTGAGATG 540
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGAACTCCCTGAGTCAGCCACATTGCTTGCTTATTCAGACAAATACAACGTTGAGATG 540
Query 541 TGTTCGTATGGAAACCACTTGCTAGGCATCCAAGGCCATCCTGAGTACAACAAAGAGATT 600
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TGTTCATATGGAAACCACTTCCTAGGCATCCAAGGTCATCCTGAGTACAACAAAGAGATT 600
Query 601 CTTTTCGAGATCATTGATCGTGTCGTCAATTTGAAGTTGATGGAGCAAGATTTTGCGGAT 660
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CTTTTCGAGATCATTGATCGCGTCGTCAATTTGAAGTTGATGGAGCAAGAGTTTGCGGAT 660
Query 661 AAGGCGAAGGCAACGATGGAAAACGCGGAACCAGATCGGAAGCAATGGCAGACTCTCTGC 720
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGGCCAAGGCAACGATGGATAATGCGGAACCAGATCGGAAGCAATGGCAGACTCTCTGC 720
Query 721 AAAAACTTTCTCAAAGGAAGATCCGAGCAAGTTTAA 756
||||||||||| ||||||||||||||||||||||||
Sbjct 721 AAAAACTTTCTGAAAGGAAGATCCGAGCAAGTTTAA 756
> Ahg951752 jgi|Araly1|951752|scaffold_13800001.1
Length=364
Score = 521 bits (282), Expect = 2e-147
Identities = 304/315 (97%), Gaps = 0/315 (0%)
Strand=Plus/Plus
Query 1 ATGGTTAATGAGCAAAAGAGATTTGCTTTGTTTCTTGCTACGAGCGATTCAACGTTCGTG 60
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 24 ATGGTTAATGAGCAAAAGAGATTTGCTTTGTTTCTTGCCACAAGCGATTCAACGTTCGTG 83
Query 61 AAGAAAGCGTATGGAGGCTATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGGTGAG 120
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 AAGAAAACGTATGGAGGATATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGGTGAG 143
Query 121 CAATGGGATCTGTTTCGAGTGATCGACGGCGAGTTTCCTGACGATAAGGATCTGGATAAG 180
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 144 CAATGGGATCTGTTTCGAGTGATCGACGGTGAGTTTCCGGACGATAAGGATCTGGATAAG 203
Query 181 TACGATGGTTTTGTTATTAGTGGAAGCCTTAACGATGCTTTTGGTGATGATGATTGGATC 240
||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 204 TACGACGGTTTTGTTATCAGTGGAAGCCTTCATGATGCTTTTGGTGATGATGATTGGATC 263
Query 241 GTTAAGCTTTGTTCTCTTTGCCAAAAGCTTGACGACATGAAGAAGAAGGTTCTTGGTATC 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 264 GTTAAGCTTTGTTCTCTTTGCCAAAAACTTGACGACATGAAGAAGAAGGTTCTTGGTATC 323
Query 301 TGCTTTGGCCACCAG 315
|||||||||||||||
Sbjct 324 TGCTTTGGCCACCAG 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5