BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G23990.2
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343951 jgi|Araly1|343951|fgenesh1_pg.C_scaffold_4000293 645 0.0
> Ahg343951 jgi|Araly1|343951|fgenesh1_pg.C_scaffold_4000293
Length=633
Score = 645 bits (349), Expect = 0.0
Identities = 427/463 (92%), Gaps = 11/463 (2%)
Strand=Plus/Plus
Query 229 GGATACACT-TTTATGTTTAAATACGATTCAAAGATCGATTCGGTGTTACAAGTAACAAA 287
||| || || ||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 172 GGAGACGCTCTTT-TGTTTAAATACGATTCAAAGATGGATTCGGTGTTACAAGTAACAGA 230
Query 288 AGAAAACTACGAAAAATGCAACACACAGAAGCCTTTGGAAGAACACAAAGACGGATACAC 347
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 231 AGAAAACTACGAAAAATGCAACACAGAGAAGCCTTTGAAAGAACACAAAGACGGATACAC 290
Query 348 AACAGTGAAACTCGACGTCTCAGGGCCTTACTACTTCATAAGTGGAGCTCCGAGTGGTAA 407
||||||||||||||| |||||||| ||||||| ||||||||||||||| |||| |||||
Sbjct 291 AACAGTGAAACTCGATGTCTCAGGTCCTTACTTCTTCATAAGTGGAGCACCGACCGGTAA 350
Query 408 CTGTGCTAAAGGTGAGAAAGTGACTGTCGTGGTTCAGTCACCTAACCACC--C--A---- 459
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 351 CTGTGCTAAAGGTGAGAAAGTGACTGTCGTGGTTCAGTCACCTAACCACCAGCCCATGCC 410
Query 460 AA-GCCAGGACCAGCCGCTGTTACGCCCACTCTTCCTCCAAAGCCATCTACTACTCCGGC 518
|| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 411 AAAGCCAGGACCAGCGGCTGTTACGCCCACTATTCCTCCAAAGCCATCTACTACTTCGGC 470
Query 519 TGCTCCAGCCCCAGCTCCACCCACTCCTTCTCCAAAGTCATCTACTTCTACGATGGCTCC 578
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 471 TGCTCCAGCGCCAGCTCCACCCACTCCTTCTCCAAAGTCATCTACTTCTATGCCGGCTCC 530
Query 579 GGCGCCAGCTCCGGCCAAGAGCAGTGCTGTTGGGTTGGTTGCTGGAAATGGCATCTTTTG 638
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 531 TGCGCCAGCTCCGGCCAAGAGCTCTGCTGTTGGGTTGGTTGCTGGAACTGGCATCTTCTG 590
Query 639 GGCCTCGACTCTTGTTGCTGTCATTGGGCTTGCTTTCGCTTAA 681
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct 591 GGCCTCGACTCTTGTTGCTGTCATTGGGCTTGCTTTCGTTTAA 633
Score = 268 bits (145), Expect = 3e-71
Identities = 176/190 (93%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 1 ATGGTGTCTTTGATTAG-CATTGTGTCCGTAGTGTTTCTTTTATTTACAACATTCTACCA 59
|||| |||||||||| | ||||||| || || |||||||||||||||| |||||||||||
Sbjct 1 ATGGCGTCTTTGATT-GACATTGTGCCCCTAATGTTTCTTTTATTTACCACATTCTACCA 59
Query 60 CTTTGGTGAGGCTAGAATCATT-AATGTGGGAGGATCATTAGACGCATGGAAGGTTCCAG 118
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 60 CTTTGGTGAGGCTAGAATCATTGAA-GTGGGAGGATCATTGGACGCATGGAAGGTTCCAG 118
Query 119 AATCTCCCAACCACTCTCTCAACCATTGGGCTGAGTCCGTCCGGTTCCAAGTCGGAGACG 178
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 119 AATCTCCCAACCACACTCTCAGCCATTGGGCTGAGTCCGTCCGGTTCCAAGTGGGAGACG 178
Query 179 CTCTTT-GTT 187
|||||| |||
Sbjct 179 CTCTTTTGTT 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5