BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24000.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320208 jgi|Araly1|320208|fgenesh1_pm.C_scaffold_4000265 1720 0.0
Ahg491690 jgi|Araly1|491690|fgenesh2_kg.7__1123__AT4G30610.1 726 0.0
Ahg343953 jgi|Araly1|343953|fgenesh1_pg.C_scaffold_4000295 193 4e-48
> Ahg320208 jgi|Araly1|320208|fgenesh1_pm.C_scaffold_4000265
Length=1425
Score = 1720 bits (931), Expect = 0.0
Identities = 1076/1148 (94%), Gaps = 2/1148 (0%)
Strand=Plus/Plus
Query 248 GACCAGGCTGCTCGTCGATTGCTTATGGAGCTTCGGAGGAAATTGGACCATTTCGGATCA 307
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 278 GACCAGGCTGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCATTTCGGATCA 337
Query 308 GCAAAACCGGTTGCAATCTTTATCTCAACAACTTTTCTTGGAACACAGAGGCAAACCTTT 367
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GCAAAACCGGTTACAATCTTTATCTCAACAACTTTTCTTGGAACACAGAGGCAAACCTTT 397
Query 368 TATTTCTTGAATCGCCTGTTGGTGTTGGATTTTCATATACTAACACAAGCTCGGATTTTG 427
||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 398 TATTTCTGGAATCGCCTGTTGGTGTTGGATTTTCATACACTAACACAAGCTCCGATTTCG 457
Query 428 AAGAATCCGGAGACGAACGTACAGCTCAGGAAAATTTGATATTTCTTATAAGTTGGATGT 487
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 458 TAGAATCCGGAGACGAACGTACAGCTCAGGATAATTTGATATTTCTTACAAGTTGGATGT 517
Query 488 CAAGATTTCCTCAGTACCGGTATAGAGATTTCTACATTGTTGGTGAAAGCTACGCCGGTC 547
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 518 CAAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCCGGGC 577
Query 548 ATTATGTTCCTCAGCTCGCCCAAAAAATTCATGAGTACAACAACGCCTACAAAAATCCAG 607
|||||||||||||||||||| |||||||| ||||||||||||| | | |||||||||||
Sbjct 578 ATTATGTTCCTCAGCTCGCCAAAAAAATTTATGAGTACAACAAGGATTGCAAAAATCCAG 637
Query 608 TAATCAATCTTAAAGGTTTCATGGTTGGTAACCCAGAGATGGACAAAAACAACGACAGAC 667
||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 638 TAATCAACCTCAAAGGTTTCATGGTTGGTAACCCAGAGATGGACAAAACCAACGACAAAC 697
Query 668 TAGGGACGATAACGTATTGGTGGTCTCACGCGATGATCTCGGACGCTTCCTACAATCGCA 727
||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 698 TAGGGACCATAACGTATTGGTGGTCTCACGCTATGATCTCAGACGCTTCCTACAATTGCA 757
Query 728 TCCTCAAAAACTGTGATTTTACAGCGGATAGATTCTCCAAAGAATGCGATTCCGCCATTT 787
||||| ||||||| ||||| | |||||| | |||||| |||||||| |||||||||| |
Sbjct 758 TCCTCGAAAACTGCGATTTCAAAGCGGAGAAATTCTCGAAAGAATGTAATTCCGCCATAT 817
Query 788 ATGTCGCTGCTGCCGACTTTGGCGACATCGATCAGTACAGCATCTACACACCCAAGTGTG 847
||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 818 ATGACGCTGCAGCCGACTTTGGCGACATCGATCAGTACAGCATCTACACACCTAAGTGTG 877
Query 848 TACCACCACAAGACCAAACGAACCAGACCAAGTTTGAGCAGATGATGCAAATGCACACAA 907
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 878 TACCACCACAAGACCAAACGAACCAGACCAAGTTTGTGCAGATGATGCAAATGCAAACAA 937
Query 908 CTAAAAGGTTTTTAGAAGATCAGTATGACCCTTGTACCGAAAACTATGCCGAGATATATT 967
||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 938 CTAAACCGTTTTTAGTAGATCAATACGACCCTTGTACCGAAAACTATGCCGAGATATATT 997
Query 968 ATAACCGTCCTGAGGTACAACGAGCTATGCATGCTAACCACACTGCCATTCCATATAAGT 1027
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 998 ATAACCGTCCTGAGGTACAACGAGCTATGCACGCTAACCACACTGCCATTCCATATAAGT 1057
Query 1028 GGACTGCTTGCAGTGACTCTGTCTTTAATAACTGGAATTGGAGAGATTCCGACAATTCAA 1087
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1058 GGACCGCTTGCAGTGACTCTGTGTTTGATAACTGGAATTGGAGAGATTCCGACAATTCAA 1117
Query 1088 TGTTACCGATATATAAGGAACTCATTGCTGCTGGTCTAAGAATCTGGGTCTACAGTGGTG 1147
|||| |||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||
Sbjct 1118 TGTTGCCGATATACAAGGAACTCATTGCTGCTGGTATAAGAATATGGGTCTATAGTGGTG 1177
Query 1148 ATACAGATTCGGTAATTCCAGTGACAGCGACTCGATATTCCCTTGGCAAACTGAATCTT- 1206
||||||||||||| |||||||||||||||||||| | ||| || ||||||| ||||||
Sbjct 1178 ATACAGATTCGGTGATTCCAGTGACAGCGACTCGGTTTTCTCTCAGCAAACTCAATCTTA 1237
Query 1207 CGAGTGAAAACTCGCTGGTACCCTTGGTACTCCGGAAACCAGGTAGGAGGACGAACAGAA 1266
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1238 C-AGTTAAAACTCGCTGGTACCCTTGGTACTCCGGGAACCAGGTAGGAGGACGAACAGAA 1296
Query 1267 GTATACGAGGGGCTTACCTTTGTGACGGTAAGAGGGGCGGGGCACGAGGTGCCATTCTTC 1326
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1297 GTATACGAGGGGCTTACCTTTGTGACGGTAAGAGGGGCGGGCCACGAGGTGCCATTCTTC 1356
Query 1327 CAACCGCAAAGTGCGCTTATTCTTTTAAGATCATTCTTGGCTGGAAATGAGCTTTCAAGA 1386
||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1357 CAACCGCAAAGTGCGCTAATTCTTTTAAGATCGTTCTTGGCTGGAAAAGAGCTTCCAAGA 1416
Query 1387 TCTTATTA 1394
| ||||||
Sbjct 1417 TATTATTA 1424
Score = 381 bits (206), Expect = 7e-105
Identities = 234/248 (94%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGAACCCACTTACTCTTTCTTCTATTTGTGCTCTTATCATTAGCAACATCATCA 60
|||||||||||||||||| | ||||||||||| |||||||||||| | |||||||||||
Sbjct 1 ATGGCAAGAACCCACTTAATTTTTCTTCTATTGGTGCTCTTATCAAAATCAACATCATCA 60
Query 61 ACATCAACAAAAGAGCAAGAGGAGGACAGGATCAAAGCACTACCAGGGCAACCAAAAGTA 120
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACATCAACAAAAGAACAAGAGGAGGACAGGATCAAAGCACTCCCAGGGCAACCAAAAGTA 120
Query 121 GGATTCTCACAATTTTCGGGTTACGTGACAGTGAACGAGTCACATGGCCGATCACTCTTC 180
|||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 GGATTCTCTCAGTTTTCGGGTTACGTGACAGTGAACGAGTCACACGGTCGATCACTCTTC 180
Query 181 TACTGGCTCACCGAGTCATCTTCTCATTCTCCTCACACCAAACCACTTCTTCTTTGGCTC 240
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TACTGGCTCACTGAGTCATCTTCTCATTCTCCTCACACCAAACCACTTATTCTTTGGCTC 240
Query 241 AATGGAGG 248
||||||||
Sbjct 241 AATGGAGG 248
> Ahg491690 jgi|Araly1|491690|fgenesh2_kg.7__1123__AT4G30610.1
Length=1589
Score = 726 bits (393), Expect = 0.0
Identities = 1068/1384 (77%), Gaps = 85/1384 (6%)
Strand=Plus/Plus
Query 53 CATCATCAACATCAACAAAAGAGCAAGAGGAGGACAGGATCAAAGCACTACCAGGGCAAC 112
|||||||| |||| ||| |||||||||| ||||||| |||||| |||| ||||||||||
Sbjct 100 CATCATCATCATCTTCAAGAGAGCAAGAGAAGGACAGAATCAAAACACTTCCAGGGCAAC 159
Query 113 CAAAAGTAGG-ATTCTCACAATTTTCGGGTTACGTGACA-GTGAACGAGTCACATGGCCG 170
||||||| || ||||||||||| || || || || | | || ||||| || ||||| ||
Sbjct 160 CAAAAGT-GGCATTCTCACAATACTCAGGCTATGTCA-ATGTTAACGAATCTCATGGTCG 217
Query 171 AT-CACTCTTCTACTGGCTCACCGAGTCATCTTCTCATTCTCCTCACACCAAACCACTTC 229
| | ||||| || ||||| || ||||||||||||| |||||| || ||||| || ||||
Sbjct 218 -TGCTCTCTTTTATTGGCTTACTGAGTCATCTTCTCCTTCTCCCCAAACCAAGCCCCTTC 276
Query 230 TTCTTTGGCTCAATGGAGGACCAGGCTGCTCGTCGATTGCTTATGGAGCTTCGGAGGAAA 289
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 277 TTCTTTGGCTCAATGGAGGACCGGGCTGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAA 336
Query 290 TTGGACCATTTCGGATCAGCAAAACCGGTTGCAATCTTTATCTCAACAACTTTTCTTGGA 349
||||||| ||||| |||| ||||||||||| |||||| ||||||||||| || |||||||
Sbjct 337 TTGGACCGTTTCGTATCAACAAAACCGGTTCCAATCTCTATCTCAACAAGTTCTCTTGGA 396
Query 350 ACACAGAGGCAAACCTTTTATTTCTTGAATCGCCTGTTGGTGTTGGATTTTCATATACTA 409
||| ||| ||||||||||| ||||||||||| || | || ||||||| ||| || || |
Sbjct 397 ACAAAGACGCAAACCTTTTGTTTCTTGAATCACCGGCGGGAGTTGGATATTCCTACACGA 456
Query 410 ACACAAGCTCGGATTTTGAAGAAT-CCGGAGACGAACGTACAGCTCAGGAAAATTTGATA 468
||||||| || ||| || ||| || ||||||| | | |||||||| || || ||||||
Sbjct 457 ACACAAGTTCCGATCTT-AAGGATTCCGGAGATGCGCAAACAGCTCAAGACAACTTGATA 515
Query 469 TTTCTTAT-AAGTTGGATGTC-AAGATTTCCTCAGTACCGGTATAGAGATTTCTACATTG 526
|||||||| || | || | || || ||||||||| ||| || ||||| ||||| || |
Sbjct 516 TTTCTTATCAAAT-GGTTATCGAA-ATTTCCTCAATACAAATACAGAGACTTCTATATCG 573
Query 527 TTGGTGAAAGCTACGCCGGTCATTATGTTCCTCAGCTCGCCCAAAAA-ATTCATGAGTAC 585
|||||||||||||||||| ||||||||||||||||| ||| ||||| || ||||| |||
Sbjct 574 CTGGTGAAAGCTACGCCGGGCATTATGTTCCTCAGCTTGCC-AAAAAGATCCATGACTAC 632
Query 586 AACAACGCCTACAA-AAATCCAGTAATCAATCTTAAAGGTTTCATGGTTGGTAACCCAGA 644
||||| || | | ||| ||| | || ||||| ||||| |||||||| || ||| |||
Sbjct 633 AACAAAGCTTTCTCTAAACCCA-TCATTAATCTCAAAGGATTCATGGTGGGAAACGCAGT 691
Query 645 GATGGACAAAAACAACGACAG-ACTAGGGAC-GATAACGTATTGGTGGTCTCACGCGAT- 701
|| |||||| | ||||||| | |||| || | |||| || |||||| ||||||| ||
Sbjct 692 GACGGACAATCAGTACGACAGTA-TAGGTACAG-TAACTTACTGGTGGACTCACGCAATC 749
Query 702 GATCTCGGACGCTTCCTACAA-TCGCATCCTCAAAAACTGTGATTTTACAGCGGATAGA- 759
| |||| ||| ||||||| || |||||||||| | || |||| || | ||| |||
Sbjct 750 G-TCTCCGACAAAACCTACAAGTC-CATCCTCAAATATTGCAATTTCACGGTGGAGAGAG 807
Query 760 TTCTCCAAA-GAATGCGATTCCGCCATTTA-TGTCGCTGCTG--CC--GACTTTGGCGAC 813
|| || | | || ||||| |||| || | | | ||| || || || || || |||
Sbjct 808 TT-TC-AGACGATTGCGACACCGCGGTTAACTAT-GCTA-TGAACCACGAGTTCGGTGAC 863
Query 814 ATCGATCAGTACAGCATCTACACACCCAA-GTGTGTACCACCACA--AGACCAAACGAAC 870
|| |||||||| ||||| ||||| ||| | ||| || | |||| ||| || ||||
Sbjct 864 ATTGATCAGTATAGCATTTACAC-CCCGACGTGCGTGGCTGCACATCAGAAGAA--GAAC 920
Query 871 CAGACCAAGTTTGA--GCA-GA-TGATGCAA-ATGCACACAA-C-TAAAAGGTTTTTAGA 923
| ||| |||| | | || ||| | || | ||| | | || | |||| ||
Sbjct 921 AATACCG-GTTTCTTTGTACGAATGAAG-AACA--CACTCTTGCGTAGACGGTT---AGT 973
Query 924 AGATCAG--TATGACCCTTGTACCGAAAACTATGCCGAGATA-TATTATAACCGTCCTGA 980
| || | ||||| |||||||| || | ||||| |||| | |||| |||||||| ||
Sbjct 974 -G-TCTGGCTATGATCCTTGTACGGAGAGTTATGCAGAGA-AGTATTTTAACCGTCAGGA 1030
Query 981 GGTACA-ACGAGCTATGCATGCTAACCACACTGCCATTC-CATATAAGTGGACTGCTTGC 1038
|| || | |||||||||| ||||| |||| |||| | ||||| ||||| ||||||
Sbjct 1031 TGTTCAGA-GAGCTATGCACGCTAATGTTACTGGAATTCGC-TATAAATGGACAGCTTGC 1088
Query 1039 AGTGACTCTGTCTTTAAT-AACTGGAATTGGAGAGATTCCGACAATTCAATGTTACCGAT 1097
||||| | | || | || || | || |||| |||||||||||| | ||||| || ||
Sbjct 1089 AGTGA-T--G-CTCTGATCAA--G-AACTGGAAAGATTCCGACAAGACGATGTTGCCCAT 1141
Query 1098 ATATAAGGAACT--CATTGCTGCTGGTCTAAGAATCTGGGTCTACAGTGGTGATACAGAT 1155
||| |||||||| || | | ||||| | || |||||| | | ||| ||||||||||||
Sbjct 1142 ATACAAGGAACTTGCAGCG-T-CTGGTTTGAGGATCTGGATTTTCAGCGGTGATACAGAT 1199
Query 1156 TCGGTAATTCCAGTGACAGCGACTCGATATTCCCTTGGCAAACTGAATCTTC-GAGTGAA 1214
||||| |||||||||| ||||| || | |||||| || | || ||||| | | |||||
Sbjct 1200 TCGGTGGTTCCAGTGACCGCGACACGGTTTTCCCTCAGCCATCTCAATCTCCCG-GTGAA 1258
Query 1215 AACTCGCTGGTACCCTTGGTACTCCGGA-AACCAGGTAGGAGGACGAACAGAAGTATACG 1273
|||||| ||||| ||||||||||| | | |||||||| |||||| | ||||| || |||
Sbjct 1259 AACTCGTTGGTATCCTTGGTACTCTG-ATAACCAGGTGGGAGGATGGACAGAGGTTTACA 1317
Query 1274 AGGGGCTTACCTTTGTGACGGTAAGAGGGGCGGGGCACGAGGTGCCATTCTTCCAACCGC 1333
|||| || ||||||| ||| ||||||| || || || |||||||| || || ||||
Sbjct 1318 AGGGCCTGACCTTTGCAACGATAAGAGGAGCAGGCCATGAGGTGCCTTTATTTGAACC-- 1375
Query 1334 AAAGTGCGCT-T-ATTCTTTTAAGATCATTCTTGGCTGGAAATGAGCTTTCAAGATCTTA 1391
|||| | ||| | |||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 1376 AAAGCGTGCTCTCATTCTTTTCAGATCATTCTTGGCCGGAAAAGAGCTCCCAAGATCTTA 1435
Query 1392 TTAG 1395
||||
Sbjct 1436 TTAG 1439
> Ahg343953 jgi|Araly1|343953|fgenesh1_pg.C_scaffold_4000295
Length=669
Score = 193 bits (104), Expect = 4e-48
Identities = 190/231 (82%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 1163 TTCCAGTGACAGCGACTCGATATT-CCCTTGGCAAACTGAATCTTCGAGTGAAAACTCGC 1221
|||||||||| | ||||||| || |||| |||||| ||||||| ||||||||||||
Sbjct 437 TTCCAGTGACTGGGACTCGA-CTTGCCCTCAACAAACTCAATCTTCCTGTGAAAACTCGC 495
Query 1222 TGGTACCCTTGGTACTCCG-GAAACCAGGTAGGAGGACGAACAGAAGTATACGAGGGGCT 1280
||||||||||||||||||| ||| | |||| |||||| | ||||| ||||| ||||||||
Sbjct 496 TGGTACCCTTGGTACTCCGAGAAGC-AGGTGGGAGGATGGACAGAGGTATATGAGGGGCT 554
Query 1281 TACCTTTGTGACGGTAAGAGGGGCGGGGCACGAGGTGCCATTCTTCCAACC-GCAAAGTG 1339
|||||||| |||||||||||||||||| ||||| ||||| | || ||||| | | |||
Sbjct 555 TACCTTTGCGACGGTAAGAGGGGCGGGCCACGAAGTGCCGGTGTTGCAACCAG-AGCGTG 613
Query 1340 CGCTTATTCTTTTAAGATCATTCTTGGCTGG-AAATGAGCTTTCAAGATCT 1389
| || | ||||||| | || |||||||| || ||| || ||| ||||||||
Sbjct 614 CTCTCACTCTTTTACGGTCCTTCTTGGCCGGCAAA-GAACTTCCAAGATCT 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5