BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24010.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320208 jgi|Araly1|320208|fgenesh1_pm.C_scaffold_4000265 789 0.0
Ahg343953 jgi|Araly1|343953|fgenesh1_pg.C_scaffold_4000295 688 0.0
Ahg491690 jgi|Araly1|491690|fgenesh2_kg.7__1123__AT4G30610.1 459 3e-128
> Ahg320208 jgi|Araly1|320208|fgenesh1_pm.C_scaffold_4000265
Length=1425
Score = 789 bits (427), Expect = 0.0
Identities = 1077/1377 (78%), Gaps = 99/1377 (7%)
Strand=Plus/Plus
Query 3 GATCAAGGCACTTCCAGGGCAACCGCAAGTAGGATTCTCACAGTTTTCGGGTTATGTGAC 62
|||||| ||||| ||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 90 GATCAAAGCACTCCCAGGGCAACCAAAAGTAGGATTCTCTCAGTTTTCGGGTTACGTGAC 149
Query 63 TGTGAACGAGTCACATGGTCGATCACTTTTCTACTGGCTTACAGAGTC-CCCT-TC-TTC 119
|||||||||||||| ||||||||||| ||||||||||| || ||||| | | || |||
Sbjct 150 AGTGAACGAGTCACACGGTCGATCACTCTTCTACTGGCTCACTGAGTCATCTTCTCATTC 209
Query 120 TTCTCACACCAAACCACTTCTTCTTTGGCTCAATGGA-GTT--TTTAAACCAACAAAACC 176
| ||||||||||||||||| ||||||||||||||||| ||| ||| | |
Sbjct 210 TCCTCACACCAAACCACTTATTCTTTGGCTCAATGGAGGTTGGTTT-TTTTTTC----TC 264
Query 177 TACCCTGAGTTTCATATTATGTAATCGACCGGGTTGCTCATCGATTGGTTATGGAGCTTC 236
| || | |||| | | |||||| || ||||| ||||||| ||||||||||||
Sbjct 265 T--CC-G-CTTTC-----A--T--TCGACCAGGCTGCTCGTCGATTGCTTATGGAGCTTC 311
Query 237 GGAGGAAATTGGACCGTTTCGGATCAATAAAACCGGTT-CTAATCTCTATCTCAACAAGT 295
|||||||||||||| |||||||||| |||||||||| | ||||| ||||||||||| |
Sbjct 312 AGAGGAAATTGGACCATTTCGGATCAGCAAAACCGGTTAC-AATCTTTATCTCAACAACT 370
Query 296 TTACGTGGAACACAGAAGCGAATATTTTGTTTCTTGAATCGCCGGCTGGAGTTGGATTTT 355
|| | ||||||||||| || || |||| ||||| |||||||| | ||| ||||||||||
Sbjct 371 TTTCTTGGAACACAGAGGCAAACCTTTTATTTCTGGAATCGCCTGTTGGTGTTGGATTTT 430
Query 356 CGTACACTAACACAAGCTCTGATCTT-AAAGATTCTGGGGACGAACGGACTGCTCAGGAA 414
| ||||||||||||||||| ||| || ||| || || |||||||| || ||||||||
Sbjct 431 CATACACTAACACAAGCTCCGAT-TTCGTAGAATCCGGAGACGAACGTACAGCTCAGGAT 489
Query 415 AATTTGATATTTCTAATTAA-ATGGATGTCGAGATTTCCTCAGTACCAATATAGAGATTT 473
|||||||||||||| | || |||||||| |||||||||||||||||||||||||||||
Sbjct 490 AATTTGATATTTCTTA-CAAGTTGGATGTCAAGATTTCCTCAGTACCAATATAGAGATTT 548
Query 474 CTACATTGTTGGTGAAAGCTACGCTGGTCATTATGTTCCTCAGCTTGCCAAAAAGATCCA 533
|||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |
Sbjct 549 CTACATTGTTGGTGAAAGCTACGCCGGGCATTATGTTCCTCAGCTCGCCAAAAAAATTTA 608
Query 534 TCTCTACAACAAAGCTTTCAACAATACACCCATCATTAACCTCAAAGGATTCATGGTGGG 593
| |||||||| | || ||| ||| || |||| | ||||||||| |||||||| ||
Sbjct 609 TGAGTACAACAAGGATTGCAAAAATCCAGTAATCA--A-CCTCAAAGGTTTCATGGTTGG 665
Query 594 AAATGGAGATATGGACAAGCATTA-CGACAGATTAGG-AGCCGCCATGTAT-GCGTGGTC 650
|| ||| |||||||| | | ||||| | |||| | || | |||| | ||||||
Sbjct 666 TAACCCAGAGATGGACAAA-ACCAACGACAAACTAGGGA-CCATAACGTATTG-GTGGTC 722
Query 651 ACACGCAATGATCTCTGACAAAACTTACAAGT-CTATCCTC-AAACACTGCAGCTT-CAC 707
||||| |||||||| ||| | ||||| | | |||||| ||| ||||| | || ||
Sbjct 723 TCACGCTATGATCTCAGACGCTTCCTACAATTGC-ATCCTCGAAA-ACTGC-GATTTCAA 779
Query 708 TGCGGATAAAACCTCGGAC-AAGTGCAATTGGGC-ACTCTACTT-CGCCTACAGA-GAGT 763
||||| ||| |||| | || || |||| || | | || | ||| | ||| || |
Sbjct 780 AGCGGAGAAATTCTCGAAAGAA-TGTAATTCCGCCA-TATA-TGACGC-TGCAGCCGACT 835
Query 764 TTGGCAA-AGTCAATGGGTACAGCATCTACTCACCCTCA-TGTGTAC-ATCA-AA--CCA 817
||||| | | || || ||||||||||||| |||| | | ||||||| | || || |||
Sbjct 836 TTGGCGACA-TCGATCAGTACAGCATCTACACACC-TAAGTGTGTACCACCACAAGACCA 893
Query 818 A-C---C-AGACCAAGTTCCTGCA--TG--G-ACG-GCTTTTGG-TAGAG-GAAT--ACG 862
| | | |||||||||| |||| || | | || || | | | | |
Sbjct 894 AACGAACCAGACCAAGTTTGTGCAGATGATGCAAATGCAAACAACTAAACCGTTTTTA-G 952
Query 863 -AG-T-A---CGACCCTTGTACCGAAAGCTACGCTGAGATATATTACAACCGTCCTGATG 916
|| | | ||||||||||||||||| ||| || ||||||||||| ||||||||||| |
Sbjct 953 TAGATCAATACGACCCTTGTACCGAAAACTATGCCGAGATATATTATAACCGTCCTGAGG 1012
Query 917 TGCAACGAGCTATGCACGCTAATCTTACCT-CCATTCCTTATAAGTGGACAT-TGTGCAA 974
| |||||||||||||||||||| | || | ||||||| ||||||||||| | ||||
Sbjct 1013 TACAACGAGCTATGCACGCTAACCACAC-TGCCATTCCATATAAGTGGACCGCT-TGCAG 1070
Query 975 T-A-T--G-GTTGTGAATAAC---AACTGGAAAGATTCCGAGTTTTCAATGTTGCCGATA 1026
| | | | ||| ||| |||| || |||| ||||||||| ||||||||||||||||
Sbjct 1071 TGACTCTGTGTT-TGA-TAACTGGAATTGGAGAGATTCCGACAATTCAATGTTGCCGATA 1128
Query 1027 TACAAGGAACTCACTGCCGCTGGTTTGAGGATCTGGGTCTTTAGTGGCGATACAGACGCA 1086
||||||||||||| ||| |||||| | || || ||||||| |||||| |||||||| |
Sbjct 1129 TACAAGGAACTCATTGCTGCTGGTATAAGAATATGGGTCTATAGTGGTGATACAGATTCG 1188
Query 1087 GTGGTTCCAGTGACTGGGACTCGACTTGCCCTCAGTAAACTCAATCTTCCGGTGAAAACT 1146
||| |||||||||| | |||||| || | ||||| |||||||||||| | || ||||||
Sbjct 1189 GTGATTCCAGTGACAGCGACTCGGTTTTCTCTCAGCAAACTCAATCTTACAGTTAAAACT 1248
Query 1147 CCCTGGTACCCTTGGTACTCCGAAAAGCAGGTGGGAGGATGGACAGAGGTATATGAGGGG 1206
| |||||||||||||||||||| || ||||| |||||| | ||||| ||||| ||||||
Sbjct 1249 CGCTGGTACCCTTGGTACTCCGGGAACCAGGTAGGAGGACGAACAGAAGTATACGAGGGG 1308
Query 1207 CTTACCTTTGCGACGATAAGAGGGGCGGGCCACGAAGTGCCGGTGTTGCAACC-CGAGCG 1265
|||||||||| |||| ||||||||||||||||||| ||||| | || ||||| | | |
Sbjct 1309 CTTACCTTTGTGACGGTAAGAGGGGCGGGCCACGAGGTGCCATTCTTCCAACCGCAAA-G 1367
Query 1266 TGCTCTCACTCTTTTAAGATCGTTCTTGGCCGGCAAAGAGCTTCCAAGATCTTATTA 1322
||| || | ||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 1368 TGCGCTAATTCTTTTAAGATCGTTCTTGGCTGGAAAAGAGCTTCCAAGATATTATTA 1424
> Ahg343953 jgi|Araly1|343953|fgenesh1_pg.C_scaffold_4000295
Length=669
Score = 688 bits (372), Expect = 0.0
Identities = 411/429 (96%), Gaps = 5/429 (1%)
Strand=Plus/Plus
Query 439 ATGTCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCT 498
||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGTCAAGATTTCCTCTGTACCAATATAGAGATTTCTACATTGCTGGTGAAAGCTACGCT 60
Query 499 GGTCATTATGTTCCTCAGCTTGCCAAAAAGATCCATCTCTACAACAAAGCTTTCAACAAT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGTCATTATGTTCCTCAGCTTGCCAAAAAGATCCATCTCTACAACAAAGCTTTAAACAAC 120
Query 559 ACACCCATCATTAACCTCAAAGGATTCATGGTGGGAAATGGAGATATGGACAAGCATTAC 618
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 ACACCCATCATTAACCTCAAAGGATTCATGGTCGGAAATGGAGATATGGACAAGCATTAC 180
Query 619 GACAGATTAGGAGCCGCCATGTATGCGTGGTCACACGCAATGATCTCTGACAAAACTTAC 678
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GACAGATTAGGAACCGCCATGTATGCGTGGTCACACGCAATGATCTCTGACAAATCTTAC 240
Query 679 AAGTCTATCCTCAAACACTGCAGCTTCACTGCG-GATAAAACCTCGGACAAGTGCAATTG 737
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 AAGTCTATCCTCAAACACTGCAGCTTCAC-GCCAGATAAAACCTCGGACAAGTGCAATTG 299
Query 738 GGCACTCTACTTCGCCTACA--GA-GAGTTTGGCAAAGTCAATGGGTACAGCATCTACTC 794
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 300 GGCACTCTACTTCGCCTACATTGTTGAGTTTGGCAAAGTCAATGGGTACAGCATCTACTC 359
Query 795 ACCCTCATGTGTACATCAAACCAACCAGACCAAGTTCCTGCATGGACGGCTTTTGGTAGA 854
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 360 AGCCTCATGTGTACATCAAACCAACCAGACCAAGTTTCTGCATGGACGGCTTTTGGCAGA 419
Query 855 GGAATACGA 863
|||||||||
Sbjct 420 GGAATACGA 428
Score = 364 bits (197), Expect = 7e-100
Identities = 219/230 (95%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 1088 TGGTTCCAGTGACTGGGACTCGACTTGCCCTCAGTAAACTCAATCTTCCGGTGAAAACTC 1147
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 434 TGGTTCCAGTGACTGGGACTCGACTTGCCCTCAACAAACTCAATCTTCCTGTGAAAACTC 493
Query 1148 CCTGGTACCCTTGGTACTCCGAAAAGCAGGTGGGAGGATGGACAGAGGTATATGAGGGGC 1207
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 494 GCTGGTACCCTTGGTACTCCGAGAAGCAGGTGGGAGGATGGACAGAGGTATATGAGGGGC 553
Query 1208 TTACCTTTGCGACGATAAGAGGGGCGGGCCACGAAGTGCCGGTGTTGCAACCCGAGCGTG 1267
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 554 TTACCTTTGCGACGGTAAGAGGGGCGGGCCACGAAGTGCCGGTGTTGCAACCAGAGCGTG 613
Query 1268 CTCTCACTCTTTTAAGATCGTTCTTGGCCGGCAAAGAGCTTCCAAGATCT 1317
|||||||||||||| | || ||||||||||||||||| ||||||||||||
Sbjct 614 CTCTCACTCTTTTACGGTCCTTCTTGGCCGGCAAAGAACTTCCAAGATCT 663
> Ahg491690 jgi|Araly1|491690|fgenesh2_kg.7__1123__AT4G30610.1
Length=1589
Score = 459 bits (248), Expect = 3e-128
Identities = 427/512 (83%), Gaps = 17/512 (3%)
Strand=Plus/Plus
Query 203 GACCGGGTTGCTCATCGATTGGTTATGGAGCTTCGGAGGAAATTGGACCGTTTCGGATCA 262
||||||| ||||| ||||||| |||||||||||| |||||||||||||||||||| ||||
Sbjct 295 GACCGGGCTGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCGTTTCGTATCA 354
Query 263 ATAAAACCGGTTCTAATCTCTATCTCAACAAGTT-TACGTGGAACACAGAAGCGAATATT 321
| ||||||||||| |||||||||||||||||||| | | ||||||| ||| || || ||
Sbjct 355 ACAAAACCGGTTCCAATCTCTATCTCAACAAGTTCT-CTTGGAACAAAGACGCAAACCTT 413
Query 322 TTGTTTCTTGAATCGCCGGCTGGAGTTGGATTTTCGTACACTAACACAAGCTCTGATCTT 381
|||||||||||||| ||||| |||||||||| ||| ||||| |||||||| || ||||||
Sbjct 414 TTGTTTCTTGAATCACCGGCGGGAGTTGGATATTCCTACACGAACACAAGTTCCGATCTT 473
Query 382 AAAGATTCTGGGGACGAACGGACTGCTCAGGAAAATTTGATATTTCTAATTAAATGGATG 441
|| ||||| || || | | || ||||| || || ||||||||||| || |||||| |
Sbjct 474 AAGGATTCCGGAGATGCGCAAACAGCTCAAGACAACTTGATATTTCTTATCAAATGGTTA 533
Query 442 TCGAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCTGGT 501
|||| ||||||||| ||| |||| ||||| ||||| || | ||||||||||||||| ||
Sbjct 534 TCGAAATTTCCTCAATACAAATACAGAGACTTCTATATCGCTGGTGAAAGCTACGCCGGG 593
Query 502 CATTATGTTCCTCAGCTTGCCAAAAAGATCCATCTCTACAACAAAGCTTTCAACAATACA 561
||||||||||||||||||||||||||||||||| |||||||||||||||| | | | |
Sbjct 594 CATTATGTTCCTCAGCTTGCCAAAAAGATCCATGACTACAACAAAGCTTTCT-CTA-A-A 650
Query 562 CCCATCATTAACCTCAAAGGATTCATGGTGGGAAATGGAGAT-ATGGACAAGCATTACGA 620
||||||||||| ||||||||||||||||||||||| | || | | |||||| || |||||
Sbjct 651 CCCATCATTAATCTCAAAGGATTCATGGTGGGAAACGCAG-TGACGGACAATCAGTACGA 709
Query 621 CAG-ATTAGG-AGCCGCCA-TGTA-TGCGTGGTCACACGCAAT-GATCTCTGACAAAACT 675
||| || ||| | | | | | || || |||| | |||||||| | |||| ||||||||
Sbjct 710 CAGTAT-AGGTA-CAGTAACT-TACTG-GTGGACTCACGCAATCG-TCTCCGACAAAACC 764
Query 676 TACAAGTCTATCCTCAAACACTGCAGCTTCAC 707
|||||||| ||||||||| | |||| |||||
Sbjct 765 TACAAGTCCATCCTCAAATATTGCAATTTCAC 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5