BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24020.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899725 jgi|Araly1|899725|Al_scaffold_0004_375 870 0.0
Ahg944926 jgi|Araly1|944926|scaffold_701155.1 444 5e-124
Ahg335341 jgi|Araly1|335341|fgenesh1_pg.C_scaffold_1001906 254 9e-67
> Ahg899725 jgi|Araly1|899725|Al_scaffold_0004_375
Length=549
Score = 870 bits (471), Expect = 0.0
Identities = 524/550 (95%), Gaps = 2/550 (0%)
Strand=Plus/Plus
Query 84 ATGGCGTCGATGGCTGCAACCACCAATTTCACCAAATCTATGCTCTTTCCATTCTCTCAT 143
||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||
Sbjct 1 ATGGCGTCGATGGCTGCGACCACCAATTTCACCAAATCTTTACTCTTTCCTTTCTCTCAT 60
Query 144 GTTTCAGGAAATGCGAGCTTGAATTCGCAGAGAAGAACATGGCCAAAGCAGT-ACAAGTC 202
|||||||||||||||||||||||||| |||||| | |||||||||||||| | | |||||
Sbjct 61 GTTTCAGGAAATGCGAGCTTGAATTCACAGAGAGGTACATGGCCAAAGCA-TCAAAAGTC 119
Query 203 TAAAAATGGTTACAGGTCTCTTCGAGTGAATGGATTATTTGGAGGTGGAAACAAAGATAA 262
|||||||||||| ||||||||||| || ||||||||||| || |||||||||||||||||
Sbjct 120 TAAAAATGGTTATAGGTCTCTTCGTGTCAATGGATTATTCGGTGGTGGAAACAAAGATAA 179
Query 263 TAACAGTGAAGATGGACAATCAAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGA 322
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TAACAGTGAAGATGGACAATCAAAGGCAGGGATATTTGGTAATATGCAGAATATGTATGA 239
Query 323 GACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTGGAAGCTGTACGTGTTCAAAAAGAGTT 382
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 240 GACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTCGAAGCTGTACGTGTCCAAAAAGAGTT 299
Query 383 AGCTGCCGCAGAATTTGATGGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGG 442
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 AGCTGCCGCAGAATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACGTTATCAGG 359
Query 443 TAACCAGCAACCAATCCGTACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAA 502
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 360 TAACCAGCAACCAATCCGTACTGATATAACCGAGGCAGCAATGGAATTAGGTTCTGAAAA 419
Query 503 ACTATCACAACTTGTCACAGAAGCATACAAGGACGCACACGCCAAGAGTGTGGTGGCTAT 562
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 ACTGTCACAACTTGTCACAGAAGCATACAAGGACGCACACGCGAAGAGTGTGGTGGCTAT 479
Query 563 GAAAGAGAGAATGAGTGACCTTGCGCAGAGCTTAGGAATGCCACCGGGTCTCAGCGAAGG 622
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 GAAAGAGAGAATGAGTGACCTTGCGCAGAGCTTAGGCATGCCACCGGGTCTCAGCGAAGG 539
Query 623 AATGAAGTAA 632
| ||||||||
Sbjct 540 ACTGAAGTAA 549
> Ahg944926 jgi|Araly1|944926|scaffold_701155.1
Length=591
Score = 444 bits (240), Expect = 5e-124
Identities = 345/395 (87%), Gaps = 9/395 (2%)
Strand=Plus/Plus
Query 219 TCTCTTCGAGTGAATGGATTATTTGGAGGTGGAAACAAA-GATAATAACAGTGAAGATGG 277
|||||||| || ||||||||||| ||||||||||| ||| || || || | || |||||
Sbjct 162 TCTCTTCGTGTTAATGGATTATTCGGAGGTGGAAA-AAAGGACAACAA-A--GAGGATGG 217
Query 278 ACAATCAAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGAGACTGTGAAGAAAGC 337
||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 218 ACAATCAAAGGCAGGTATACTTGGTAACATGCAGAATTTGTATGAGACTGTGAAGAAAGC 277
Query 338 TCAAATGGTTGTTCAAGTGGAAGCTGT-ACGTGTTCAAAAAGAG-TTAGCTGCCGCAGAA 395
|||||||||||||||||| || ||||| | | || || || ||| || |||| || |||
Sbjct 278 TCAAATGGTTGTTCAAGTAGAGGCTGTTA-GAGTGCAGAAGGAGCTT-GCTGTTGCTGAA 335
Query 396 TTTGATGGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAACCA 455
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 336 TTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCA 395
Query 456 ATCCGTACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAAACTATCACAACTT 515
|| || |||||||| || || |||||||||||| |||| ||||||||||| |||| |||
Sbjct 396 ATTCGCACTGATATCACTGATGCAGCAATGGAATTAGGCTCCGAAAAACTTTCACTACTG 455
Query 516 GTCACAGAAGCATACAAGGACGCACACGCCAAGAGTGTGGTGGCTATGAAAGAGAGAATG 575
|||||||||||||||||||| || || || || ||||| ||||||||||||| ||||||
Sbjct 456 GTCACAGAAGCATACAAGGAAGCTCATGCTAAAAGTGTACTGGCTATGAAAGAAAGAATG 515
Query 576 AGTGACCTTGCGCAGAGCTTAGGAATGCCACCGGG 610
||||| ||||||||||||||||| |||||||||||
Sbjct 516 AGTGATCTTGCGCAGAGCTTAGGGATGCCACCGGG 550
> Ahg335341 jgi|Araly1|335341|fgenesh1_pg.C_scaffold_1001906
Length=447
Score = 254 bits (137), Expect = 9e-67
Identities = 194/221 (88%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 284 AAAGGCAGGAATATTTGGTAATATGCAGAATATGTATGAGACTGTGAAGAAAGCTCAAAT 343
||| ||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 109 AAA-GCAGGTATACTTGGTAACATGCAGAATTTGTATGAGACTGTGAAGAAAGCTCAAAT 167
Query 344 GGTTGTTCAAGTGGAAGCTGT-ACGTGTTCAAAAAGAG-TTAGCTGCCGCAGAATTTGAT 401
|||||||||||| || ||||| | | || || || ||| || |||| || |||||||||
Sbjct 168 GGTTGTTCAAGTAGAGGCTGTTA-GAGTGCAGAAGGAGCTT-GCTGTTGCTGAATTTGAT 225
Query 402 GGTTATTGTGCAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAACCAATCCGT 461
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 226 GGTTATTGTGAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCAATTCGC 285
Query 462 ACTGATATTACCGAGGCAGCAATGGAACTAGGTTCCGAAAA 502
|||||||| || || |||||||||||| |||| ||||||||
Sbjct 286 ACTGATATCACTGATGCAGCAATGGAATTAGGCTCCGAAAA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5