BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24030.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899726 jgi|Araly1|899726|Al_scaffold_0004_376 1825 0.0
> Ahg899726 jgi|Araly1|899726|Al_scaffold_0004_376
Length=1371
Score = 1825 bits (988), Expect = 0.0
Identities = 1258/1385 (91%), Gaps = 31/1385 (2%)
Strand=Plus/Plus
Query 15 ATGGAATTCAGATACAGAGCCATCGATAATAATCGCCCACCTCCTGCGACGGACACGACA 74
|||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||
Sbjct 1 ATGGAATTCAGATACAGAGCCATCGACAGTAATCGGCCACCTCCTGCGACGGAGACGACT 60
Query 75 CCATCTCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAGGACAA 134
||||||| ||||| ||| |||| ||| |||||||| |||| ||||||||| |||| ||
Sbjct 61 CCATCTCAGTCGCCGAACCCGAGCTTCCCTTTCTTTTCGGCCCGATCAATGTCAGG--AA 118
Query 135 CAAAGTGAGGATCAAGTTCGGGAAGCGATCA---AACGAGAAATTGAGAAAGAACAAATC 191
|||||||||| ||||||||||||||||| | |||| ||||||||||||||| |||||
Sbjct 119 -AAAGTGAGGAACAAGTTCGGGAAGCGATGATTCAACGGGAAATTGAGAAAGAAAAAATC 177
Query 192 CGTCAAGAGATCATTATCGCAGAAGCAGCGAGAAAACGAGAGCTTATAGCTGAGGTTTTA 251
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 CGTCAAGAGATCATTATTGCAGAAGCAGCGAGAAAACGAGAGCTTATAGCCGAGGTTTTA 237
Query 252 CAAGAGATGGCTATCGAGAGAGAAATGGCGA-TACGACGAGTTTCAGACA-CGGAGATGT 309
||||||||||||||||||||||| ||||||| || | ||||| || |||| |||| ||||
Sbjct 238 CAAGAGATGGCTATCGAGAGAGAGATGGCGATTA-GGCGAGTCTCTGACACCGGA-ATGT 295
Query 310 CTCTAGAGGAAAAGCTAACTATGTGGATCAATCAAAGGAAGCTTCCAAATCAAAATCAGA 369
| || ||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 296 CGCTTGAGGAGAAGCTCATTATGTGGATCAATCAAAGGAAGCTTCCAAATCAGAATCAGA 355
Query 370 ATCAG---TTCAACAACTTTTTCAGACAG--AAGTATAGTTACATTGATTCTCTGATCAA 424
||||| ||||||||| |||| | || |||||||||||||||||||||||||| ||
Sbjct 356 ATCAGAACAACAACAACTTGTTCA-A-AGCTAAGTATAGTTACATTGATTCTCTGATGAA 413
Query 425 CACAGGCTCTTACAACAGTCTACTTACATCACCAATGATGCAATTGCCTCAACTTCAGCA 484
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 414 CACAGGCTCTTACAACAGTCTAGTTACATCACCAATGATGCAATTGCCTCAACTCCAGCA 473
Query 485 AATGTCTGAAGCTACCGGAACATCAATGTTGGAGTCTAATAAAGAGAATTTGATTGTATT 544
||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 474 AATTTCTGAAGCTACTGGAACATCAATGTTGGAGTCTAACAAAGAGAAGTTGATTGTATT 533
Query 545 GAATAGAGCTGAT-ATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACCATGCAAT 603
|| ||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 534 GAGTAGGGCTGATCA-TATAGGAGCAAAGCCTAAAGCAGACAGTGTTGGTACCATGCAAT 592
Query 604 TGCCTAAACTTCAGCAAATGCCTGAGGCTAC-A--GGAACATCAGTTTTGGAGTCTAACA 660
||||| |||| ||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 593 TGCCTCAACTCCAGCAAATGCCTGAGACTACTACCGGAACATCAGTTTTGGAGTCTAACA 652
Query 661 AAGAGCAGTTTATTGTATTGGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGG 720
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AAGAGAAGTTAATTGTATTGGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGG 712
Query 721 ATATTCAAACTGGTTTGAACGAAGATCTTCAAGTGAAAAGGCCGAAAGCAAAAGAATCAG 780
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 713 ATACTCAAATTGGTTTGAACGAAGATCTTCAAGTGAAAAGGCAGAAAGCAAAAGAATCAG 772
Query 781 AAGCAAAGGCGATGTCTTTGGAAACCGGAGAAATAGTCTCTTCGAAGGTTCCTTGTTCAG 840
|||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||| |
Sbjct 773 AAGCAAAGACGATGTCTTTGGAAAGCGGAGAGATAGTCTCTTCGAAGCTTCCTTGTTTGG 832
Query 841 GGAAACTTGGCAGTGGAAAGAAAGCAGAAGGTAAGCTAAGAACTAACCAGAAGTTTTGGT 900
|||||||||||||||||||||||| |||| | ||| |||||| ||| | ||||||||||
Sbjct 833 GGAAACTTGGCAGTGGAAAGAAAGTAGAAAGCAAGGTAAGAAGTAATTATAAGTTTTGGT 892
Query 901 GTGAGATTTGTAAAGTTGGGACCTATTGTCAAATAGTCATGAGGGATCATGAGTTAGGTA 960
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 893 GTGAGATTTGTAAAGTTGGGACCTATTGTCAAACAGTCATGCGAGATCATGAGTTAGGTA 952
Query 961 AAAAGCATAAGGCTGCTGTTACACAACAGAATG-AGACACCTGAAGCTGCTTCAACCTCC 1019
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 953 AAAAGCATAAGGCTGCTGTTACACAACAGAATGAAG-TACCTGAAGCTGCTTCAACCTCC 1011
Query 1020 TTATCCCCTGCTTCCGTTACAGCACCGCAACCAGAAGCCATTAGAGTATGTGAAAATGCT 1079
|||||||||||||| ||||| || |||||| ||||||| | || |||| ||||| |||||
Sbjct 1012 TTATCCCCTGCTTCAGTTACTGCGCCGCAATCAGAAGCTACTACAGTACGTGAAGATGCT 1071
Query 1080 AATCCGCAGGGTCaaaaagtagatgaaattg-cggcgaaagaaacaacgggaaagaagac 1138
||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 1072 AATCCGCAGGG---AAAAGTGGATGAAA-TGTCGGCGAAAGAAACAACGGGAAAGAAGAC 1127
Query 1139 aaaaggtgagaagaaaaag-aaggaaaCGGTTTGGTGCAAAACTTGTAATATTCAGACGA 1197
| ||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1128 AGAAGGTGAGACGAAAAAGAAAGG-AACGTTTTGGTGCAAAACTTGTAATATTCAGACGA 1186
Query 1198 ATTCTGAGCAGACGATGAGGAATCATACGCTTGGGAAAAAACACATGGCTTTGCTTGAGA 1257
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1187 ATTCTGAGCAGACGATGAGGAATCATACGCTTGGGAAAAAACACATGACTTTGATTGAGA 1246
Query 1258 AACAGCAGAATAAACTCATTACAGTCCCAGTGAGATCTCTGAATGCTGATCCAGGACAGA 1317
|||||||||| ||||||||||| ||||||||||||||| | ||||||||||| ||| |||
Sbjct 1247 AACAGCAGAAGAAACTCATTACCGTCCCAGTGAGATCTTTAAATGCTGATCCCGGAGAGA 1306
Query 1318 AAGAATCAGTATCTCTAGCAATGGATGATACACAAGGTAAGGTTCATTGCTTGGAGAAGT 1377
| |||||||| ||| ||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 1307 AGGAATCAGTTTCTATAGCAATGGATGATACAAAAGGTAACGTTCATTGCTTGGAAAAGT 1366
Query 1378 CATAG 1382
|||||
Sbjct 1367 CATAG 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5