BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G24040.1

Length=410
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481262 jgi|Araly1|481262|fgenesh2_kg.4__322__AT2G24040.1          512    7e-145


> Ahg481262 jgi|Araly1|481262|fgenesh2_kg.4__322__AT2G24040.1
Length=349

 Score =  512 bits (277),  Expect = 7e-145
 Identities = 329/353 (93%), Gaps = 7/353 (2%)
 Strand=Plus/Plus

Query  15   TTGTTTCGTGAAGCTTCTCTCTTCTTCTCTTTTTCAAGTCATCAAATCTGATCTAATCTC  74
            ||||||||||||| |||||||||| | |||| |||||||||||||||||||||| |||||
Sbjct  1    TTGTTTCGTGAAGTTTCTCTCTTC-T-TCTTCTTCAAGTCATCAAATCTGATCTCATCTC  58

Query  75   CGTAAATTAATGGCGAGTAGTTGCGAGCTTTGCTGCGAGATCTTCATCGCAATTCTTCTT  134
             || |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  59   TGTTAATTAATGGCTAGTAATTGCGAGCTTTGCTGCGAGATCTTCATCGCAATTCTTCTT  118

Query  135  CCTCCTGTCGGAGTTTGTCTCAGGCATGGCTGTTGCACTGTTGAGTTCTTCATTTGTTTG  194
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  CCTCCTGTTGGAGTTTGTCTCAGGCATGGCTGTTGCACTGTTGAGTTCTTCATTTGTTTG  178

Query  195  ATACTGACTTGCTTAGGCTACTTACCAGGAATAATATACGCAATTTACGCAATTTGTTTC  254
            ||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct  179  ATACTCACTTGCTTAGGCTACTTACCGGGAATAATATACGCGATTTACGCGATTTGTTTC  238

Query  255  TTGCACCGCGATGAGTATTTTGATGAATACAGACGCCCAATCTACTATGTTGCTTGACCT  314
            ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  TTGCACCACGATGAGTACTTTGATGAATACAGACGCCCAATCTACTATGTTGCTTGACCT  298

Query  315  CT-TGATTGATTC-TTGCTCTTGAGCACACATATTGTACTTTAAAGTGTAATT  365
             | ||||| |||| ||||||||||| | | ||||||||||||||||||| |||
Sbjct  299  -TGTGATTTATTCATTGCTCTTGAGAA-A-ATATTGTACTTTAAAGTGTGATT  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14728057354


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5