BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24050.1
Length=2701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481263 jgi|Araly1|481263|fgenesh2_kg.4__323__AT2G24050.1 3696 0.0
> Ahg481263 jgi|Araly1|481263|fgenesh2_kg.4__323__AT2G24050.1
Length=2603
Score = 3696 bits (2001), Expect = 0.0
Identities = 2424/2623 (92%), Gaps = 50/2623 (2%)
Strand=Plus/Plus
Query 17 AAACCACAGAACACAGCTTCAGCCaaaaaaaaaaaGGGAATCGAAGTGA--TT-TTATCT 73
||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 1 AAAACACAGAACACAGCTTCAAAAAAAAAAAAAAAGGGAATCGAAGTGATTTTATTATCT 60
Query 74 TCTCCACCGTCAATACAGACACATATATATACACTATATACCTCTATCTATCTGC--AAA 131
|||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||
Sbjct 61 TCTCCACCGTCAAT----ACACATATATATACGCTATATAGCTCTATCTATCTGCAAAAA 116
Query 132 ACttt-t-ttttATTGAATCCTTCTAATTGC-GAAAAAACAAGAGAATCGAGTAATGCAA 188
| ||| | |||||| | ||| || | | |||||| ||||||||||||||||||||
Sbjct 117 AATTTATACTTTATT---TTATTC-AA-TCCTAAAAAAATAAGAGAATCGAGTAATGCAA 171
Query 189 CAACAAGGTGAACCATCGGTTTTGAGTTTGAGACCCGGC------GGTGGCGGCGGCAAA 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 172 CAACAAGGTGAACCATCGGTTTTGAGTTTGAGACCCGGCGGTGGTGGTGGCGGCGGCAGA 231
Query 243 AGCAGGCTTTTCGTCCCTCGCTTTAGCTCCTCTTCCTCTTTTGATCTTACCAATGGCGGC 302
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGCAGGCTTTTCGTCCCACGATTTAGCTCCTCTTCCTCTTTTGATCTTACCAATGGCGGC 291
Query 303 --T-CCGAAGAAACCCCTTTTCCCGTCAAGAGAGAAAATTCTGGTGAACGTGTGAGGTTT 359
| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 292 GGTGCCGGAGAAACCCCTTTTCCCGTCAAGAGAGATGATTCTGGTGAACGTTTGAGGTTT 351
Query 360 TCCCGAGAAGAGATACTTCAGCACAGAGAGTCTGTTCAAGTCTCTGATGAAATTCTTAGA 419
|||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 352 ACCCGAGAACAGCTGCTTCAGCATAGAGAGTCTGTTCAAGTCTCTGATGAAATTCTTAGA 411
Query 420 CGCTGTAAGGAAATCGCAGTTGAGCTTTTTGGCGAAGAGCAGAGTTGGGGGAATCATGCA 479
|| |||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||
Sbjct 412 CGATGTAAGGAAATCGCAGCTGAGCTTTTCGGCGAAGATCAGAGTTGGGGGAATCGTGCA 471
Query 480 GCCGAGAGTAAAATAACAAATCATA-CTCAGCATCGTCATACCGAGACTGATAACCGTGA 538
||||||| |||| |||||||||| | ||| | ||||| || ||||| |||||||||| ||
Sbjct 472 GCCGAGAATAAACTAACAAATCA-ACCTCTGAATCGTTATTCCGAGCCTGATAACCGCGA 530
Query 539 CTGGCATAGTCGTTCTCAGATTCCAACCTCTGGTAAAGAATGGTTAAGGGACGACCCTCG 598
||||||||||||| | |||||||| |||||||||||||||||||| || |||||| | ||
Sbjct 531 CTGGCATAGTCGTGCGCAGATTCCGACCTCTGGTAAAGAATGGTTTAGAGACGACTCACG 590
Query 599 TGAAGCCAAAAGTACATGGCAAGGGTCTGGTCCTACCCCTGTGCTGATTAAAGCGGAGGT 658
|||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 591 TGAAGCTAAAAATACATCTCAAGGGTCTGGTCCTACCCCTGTGCTGGTTAAAGCGGAGGT 650
Query 659 TCCGTGGTCAGCTAAAAGAGGAGCTCTTTCAGATAAAGATCGAGTCGTTAAGAGCGTGAA 718
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 651 TCCGTGGTCAGCTAAAAGAGGAGCTCTTTCAGATAAAGACCGAGTCGTCAAGAGCGTGAA 710
Query 719 AGGTATTCTAAACAAGCTTACTCCGGAGAAGTACGAGCTTCTTAAAGGTCAATTGATTGA 778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGGTATTCTGAACAAGCTTACTCCGGAGAAGTACGAGCTTCTTAAAGGTCAATTGATTGA 770
Query 779 CGCTGGCATC-ACTTCCGCAGATATCCTAAAGGAAGTGATACAGCTAATTTTTGAGAATG 837
||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGCTGGCATCGA-TTCTGCTGATATCCTAAAGGAAGTGATACAGCTAATTTTTGAGAATG 829
Query 838 CTATACTGCAGCCCACATTCTGCGAGATGTATGCTCTTCTGTGTTTTGATATTAACGGAC 897
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTATACTGCAGCCGACATTCTGCGAGATGTATGCTCTTCTGTGTTTTGATATTAACGGAA 889
Query 898 AGCTACCTTCGTTTCCCTCTGAGGAACCCGGTGGGAAAGAAATAACCTTTAAAAGAGTGC 957
|||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 890 AGCTCCCTTCGTTTCCGTCTGAGGAACCTGGTGGGAAAGAAATAACTTTTAAAAGAGTCC 949
Query 958 TTTTGAATAATTGCCAAGAGGCATTTGAAGGTGCTGGCAAATTGAAGGAAGAGATCAGAC 1017
|||| ||||||||||||||||||||||| ||| |||||||||||||| |||| |||||||
Sbjct 950 TTTTAAATAATTGCCAAGAGGCATTTGAGGGTACTGGCAAATTGAAGAAAGAAATCAGAC 1009
Query 1018 AGATGACTAATCCAGACCAAGAAATGGAAAGAATGGATAAGGAGAAAATGGCAAAGCTCC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1010 AGATGACTAATCCAGACCAAGAAATGGAAAGAATGGATAAGGAGAAAATGGCGAAGCTCC 1069
Query 1078 GGACACTTGGAAATATCCGTCTGATTGGTGAACTTCTCAAGCAAAAGATGGTG-CCTGAG 1136
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||| || |||
Sbjct 1070 GGACACTTGGAAATATTCGTCTGATTGGAGAACTTCTGAAGCAAAAGATGGTGACC-GAG 1128
Query 1137 AAGATAGTTCATCATATTGTTCAGGAGCTTTTAGGAGACGATACTAAAGCTTGCCCAGCA 1196
|||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||
Sbjct 1129 AAGATAGTTCATCATATTGTCCAAGAGCTTTTAGGAGAAGATAGTAAAGCTTGCCCAGCA 1188
Query 1197 GAGGGAGATGTTGAAGCTCTCTGCCAATTTTTTATAACCATTGGGAAGCAACTTGATGAC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1189 GAGGGAGATGTTGAAGCTCTCTGCCAATTTTTTATAACCATTGGGAAGCAACTTGATAAC 1248
Query 1257 AGCCCACGATCTCGAGGTATTAATGACACGTACTTTGGTCGGTTGAAGGAGCTAGCAAGG 1316
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 1249 AGCCCACGATCTCGAGGTATTAATGACATGTACTTCGGTCGGTTGAAGGAGCTAGCAATG 1308
Query 1317 CACCCTCAGCTAGAGCTGCGTCTCAGATTTATGGTCCAAAACGTTGTTGATCTTCGAGCT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1309 CACCCTCAGCTAGAGCTGCGTCTCAGATTTATGGTCCAAAACGTTGTTGATATGCGAGCT 1368
Query 1377 AATAAATGGGTACCAAGGCGTGAGGAGGTGAAAGCGAAGAAAATCAATGAAATCCATTCT 1436
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 AACAAATGGGTACCAAGGCGTGAGGAGGTGAAAGCGAAGAAAATCAATGAAATCCATTCT 1428
Query 1437 GAGGCAGAGAGAAATCTTGGGATGCGTCCGGGTGCAATGGCAAGTATGAGAAACAACAAC 1496
||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 1429 GAGGCAGAGAGAAATCTTGGGTTGCGTCCGGGTGCAATGGCAAATATGAGACACAACAAC 1488
Query 1497 AACAACCGCGCTGCGGTTTCTGGTGCAGCAGACGGTATGGGCT-TGGGAAATATCCTTGG 1555
||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||
Sbjct 1489 AACAACCGCGCTGCGGTTTCTGGTGCAGCAGACAGTATTGGCTCT-GGAAATATCCTTGG 1547
Query 1556 CCGTCCTGGTACTGGAGGAATGATGCCCGGCATGCCGGGAACTAGGGTGATGCCTA-TG- 1613
|||||||||||||||||||||||||||||||||||| ||||||||| || |||||| ||
Sbjct 1548 CCGTCCTGGTACTGGAGGAATGATGCCCGGCATGCCAGGAACTAGGATGGTGCCTATTGT 1607
Query 1614 -GATGAAGACGGCTGGGAAATGGCACGGACCCGGTCCATGCCCAGAGGCAATAGACAAAC 1672
||||||| |||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 1608 TGATGAAGGCGGCTGGGAAGTACCACGGACCCGGTCCATGCCCAGAGGTAATAGACAAAC 1667
Query 1673 AGTGCAGCAGCCGCGTTTTCAGCCACCTCCTGCTATCAACAAGTCACTCTCAGTCAACTC 1732
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AGTGCAGCAGCCGCGTGTTCAGCCACCTCCTGCTATCAACAAGTCACTCTCAGTCAACTC 1727
Query 1733 AAGGCTTCTTCCTCAGGGTAGCGGAGGTCTCCTCAATGGTGGTGGTAGGCCAAGCCCTCT 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1728 AAGGCTTCTTCCTCAGGGTAGCGGAGGTCTCCTCAATGGTGGTGGTAGGCCAAGCGCTCT 1787
Query 1793 TTTGCAAGGTAACGGTTCTAGCTCAGCTCCTCAAGCCTCTAAACCCATTCCAACTGTTGA 1852
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1788 TGTGCAAGGTAACGGTTCTAGCTCAGCTCCTCAAGCCTCTAAACCCATTCCAACCGTTGA 1847
Query 1853 GAAGCCGCAACCACGGTCTCAACCTCAGCCACAGCCACAGGCAGCTCCTCTGGCTAATAG 1912
|||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1848 GAAGCCACAACCACGGTCTCAACCTCAGCCACAGCGACAGGCGGCTCCTCTGGCTAATAG 1907
Query 1913 CCTGAACGCAGGAGAGCTCGAGAGAAAAACCAAGTCGCTTCTTGAAGAGTATTTCAGTAT 1972
||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 1908 CCTGAGCGCAGGAGAGCTCGAAAGAAAAACCAAGTCGCTTCTTGAAGAGTATTTTAGTGT 1967
Query 1973 TCGTTTAGTGGATGAGGCATTGCAATGCGTTGAGGAACTAAAATCTCCATCTTACCACCC 2032
||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1968 CCGTTTAGAGGATGAGGCATTGCAATGCGTTGAGGAACTGAAATCTCCATCTTATCACCC 2027
Query 2033 GGAGCTCGTCAAGGAAACAATCTCGCTCGGTCTAGAGAAAAACCCACCATTGGTTGAACC 2092
|||||||||||||||| | ||||| |||||||||||||||||||| || |||||||||||
Sbjct 2028 GGAGCTCGTCAAGGAAGCCATCTCACTCGGTCTAGAGAAAAACCCTCCGTTGGTTGAACC 2087
Query 2093 AATTGCCAAACTCTTGAAACATCTGATCTCTAAGAATGTGCTGACATCTAAAGACTTAGG 2152
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 2088 AATTACCAAACTCTTGAAACATCTGATCTCGAAGAATGTGCTGACATGTAAAGACTTAGG 2147
Query 2153 GGCAGGTTGTTTGCTCTACGGTTCCATGTTGGATGACATTGGAATCGATCTGCCAAAAGC 2212
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2148 GGCGGGTTGTTTGCTCTATGGTTCTATGTTGGATGACATTGGAATCGATCTGCCAAAAGC 2207
Query 2213 ACCAAACAGCTTCGGAGAGTTCTTAGGGGAGTTGGTCTCAGCTAAAGTCTTGGATTTCGA 2272
||||||||||||||||||| |||||||| ||||||||||||| ||||| || || |||||
Sbjct 2208 ACCAAACAGCTTCGGAGAGATCTTAGGGAAGTTGGTCTCAGCGAAAGTATTAGACTTCGA 2267
Query 2273 GCTGGTGAGAGATGTTCTGAAGAAGATGGAAGATGAGTGGTTCAGAAAAACCGTACTCAA 2332
|||||||| | | || |||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 2268 GCTGGTGAAAAAGGTACTGATGAAGATGGAAGATGAGTGGTTCAGAAAAGCCGTACTTGA 2327
Query 2333 TGCAGTGATAAAGAGTGTTCGCGAGTGTCCATCGGGACAGTCTGTATTGGATTCGCAGGC 2392
|||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2328 TGCAGTTATACAGAGTGTTCGCGAGAGTCCATCGGGACAGTCTGTATTGGATTCGCAGGC 2387
Query 2393 GGTTGAAGTTGAGGCATGCCAGAGTTTGCTCTAAAAGTAAATTGGTT-TGGCCGGCAAAG 2451
| ||||||||||||||||||||||||||||||||||| || |||| | | |||| |||
Sbjct 2388 CGCGGAAGTTGAGGCATGCCAGAGTTTGCTCTAAAAGTATAT-GGTTCTCGACGGCGAAG 2446
Query 2452 TCTTAAAATGTTT-ACTTGAGGAGTAGTCTGAATCATTTTTCTTATATAAGTTTTGAGTT 2510
|||||||| |||| ||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 2447 TCTTAAAACGTTTTACTTGAG---TAGTCTGAATCATTTTT-TTATAAAAGTTTTGAGTT 2502
Query 2511 AATATCACA-TA--CTTGGAAGATTTGGTTCAGTTTTGTTACATCTTTG-tttttttCGT 2566
||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2503 AATATCATAATATACTTGGAAGATTTGGTTCAGTTTTGTTACATCTTTGGTTTTTTTCGT 2562
Query 2567 TCATCTTGAGTTTTGAACATTTCAGGGTGAGGAGaaaaaaaaa 2609
||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2563 TCATCTTGAGTTTTGAACATTTCAGGGTGAG-A-AAAAAAAAA 2603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101891405375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5