BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24060.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481264 jgi|Araly1|481264|fgenesh2_kg.4__324__AT2G24060.1 1291 0.0
> Ahg481264 jgi|Araly1|481264|fgenesh2_kg.4__324__AT2G24060.1
Length=1085
Score = 1291 bits (699), Expect = 0.0
Identities = 852/922 (92%), Gaps = 26/922 (3%)
Strand=Plus/Plus
Query 15 TTCTGGATAAGAGCTTCGTGATGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 74
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTGGATAAGAGCTTCGCGAAGGTTTGAAACCTCTGAGTGAAGAAGAAGCGCCATGGCT 60
Query 75 GGGATTACCAGCAGCACCGTTGGATTCAACGCCGTCTTCACCGGAATAACCAAAACAGTA 134
||||||| | ||||||||| |||||||||||||| ||| ||||||| ||||||||||||
Sbjct 61 GGGATTA-C--CAGCACCGTCGGATTCAACGCCGTTTTCGCCGGAATCACCAAAACAGTA 117
Query 135 TCATCACATTCACTCTTCTCTGTTGATTCCAAACTCTGTAGTCTTCGTCTCTCCAAAACC 194
|||||||||||||| ||| | || ||||||||||||||| | ||||||||||||||||||
Sbjct 118 TCATCACATTCACTATTCGCCGTCGATTCCAAACTCTGTGGACTTCGTCTCTCCAAAACC 177
Query 195 GAACTGTCTTTCACTAATCTCACTCCTTCTCCTCGCCGT-GCTTTCGCCGTCACTTGCCG 253
||||| || ||| | |||||||||||| ||||||||||| || ||| |||||||||||||
Sbjct 178 GAACTTTCCTTCGCAAATCTCACTCCTACTCCTCGCCGTGGC-TTCACCGTCACTTGCCG 236
Query 254 CTTCGGC------GGTGGTGGT---GGAGGTTATCGATTCTCTGGAGACAATAGAAGAGG 304
||||||| ||||||||| ||||||||||| ||||||||||| |||| ||||
Sbjct 237 CTTCGGCGGTGGTGGTGGTGGTGGCGGAGGTTATCGTTTCTCTGGAGATTCTAGACGAGG 296
Query 305 TAGGCCGAAAGAAGCTGAAATTGATGAAGCTCTTGATATCTCCTCAATTAGGTCAGCTAC 364
|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 TAGGCCTAAAGAAGCCGAAATTGATGAAGCGCTTGATATCTCCTCAATTAGGTCAGCTAC 356
Query 365 TGTTAGGCTTATCGATGGGCAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGTTAGGCTTATCGATGGACAACAAAACATGCTTGGTTTAGTGTCTAAAGACGAAGCCGT 416
Query 425 TCGAATGGCTGATGATGCTGAACTTGATCTGGTTATACTATCGCCTGATGCAGATCCTCC 484
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 417 TCGAATGGCTGATGATGCTGAGCTTGATCTGGTGATATTATCGCCTGATGCAGATCCTCC 476
Query 485 GGTTGTTAAAATGATGGACTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 544
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTTGTTAAAATGATGGATTACAGTAAATACAGATACGAACAGCAAAAGAGGAAAAAAGA 536
Query 545 TCAGCAAAAGAAAACAACTCGCATGGATTTAAAGGAGCTTAAAATGGGTTATAATATTGA 604
||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 537 TCAGCAAAAGAAAACCACTCGCATGGACTTAAAGGAGCTTAAAATGGGTTACAACATTGA 596
Query 605 TCAGCATGATTATTCCGTTC-GTCTAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 663
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 597 TCAGCATGATTATTCCGTTCGGT-TAAGGGCTGCCCAAAAGTTCTTGCAAGATGGTGACA 655
Query 664 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGGTTAAGGTGATTGTGAGCATGAAAGGACGAGAAAACGAGTTCAGAAATATCGCTATTG 715
Query 724 AACTCCTCAGACGTTTCCAAACCGAAATAGGGGAGCTTGCAACTGAAGAGAGCAAAAACT 783
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 716 AACTCCTCAGACGTTTTCAAACCGAAATAGGGGAGCTTGCGACTGAAGAGAGCAAAAACT 775
Query 784 TCAGGGACAGAAA-TATGTTCATTATCTTGGTCCCAAACAAAGAAATGATTCGGAAACCA 842
||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 776 TCAGGGACAGAAACT-TGTTCATTATCTTGGTACCAAACAAGGAAATGATTCGGAAACCA 834
Query 843 CAAGAACCACCCACAAGAAAGAAGaaaaaaaCAG-CGGAAAACGAAGCTTCAGCTTCAGC 901
||||||||| || ||||||||||||||||| || |||||||||||| ||||| || ||
Sbjct 835 CAAGAACCAGCCTCAAGAAAGAAGAAAAAA-CAATCGGAAAACGAAGTTTCAG-TT--GC 890
Query 902 TGCAGAAATAACagctgagcct 923
||||||||| |||||||||
Sbjct 891 ---AGAAATAACGGCTGAGCCT 909
Score = 276 bits (149), Expect = 3e-73
Identities = 173/184 (94%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 984 gagcctCTACAGATCGATTCTTGAGTTTAAAATCTTGTGGT-AGGATTTTCAGAGCTAAA 1042
|||||||| || ||||| ||| |||||| ||||||| |||| |||||||| |||||||||
Sbjct 904 GAGCCTCTGCAAATCGAGTCTGGAGTTT-AAATCTTATGGTAAGGATTTTGAGAGCTAAA 962
Query 1043 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGCCAAGAGCTGTATAACA 1102
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 963 GTAAAGTTTTGTATATTTACTTTTCTACCATGTCTCAAGAGAGTCAAGAGCTGTATAACA 1022
Query 1103 AATAGAGTTAGTCCTATTTGAATGATGTTCTTCGTTTGTAGATCTTTTCTCTAATCTAtt 1162
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1023 AATAGAATTAGTCCTATTTGAATGATGTTCTTC-TTTGTAGATCTTTTCTCTAATCTATT 1081
Query 1163 tttt 1166
||||
Sbjct 1082 TTTT 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5