BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G24070.1 Length=2140 Score E Sequences producing significant alignments: (Bits) Value Ahg320214 jgi|Araly1|320214|fgenesh1_pm.C_scaffold_4000271 2433 0.0 Ahg491681 jgi|Araly1|491681|fgenesh2_kg.7__1114__AT4G30710.2 350 3e-95 > Ahg320214 jgi|Araly1|320214|fgenesh1_pm.C_scaffold_4000271 Length=1818 Score = 2433 bits (1317), Expect = 0.0 Identities = 1648/1800 (92%), Gaps = 53/1800 (3%) Strand=Plus/Plus Query 378 CAAGACCGCCTCTTGCTCCATCTGAGAAGAACAATGTAGGTT-CTGTCACGCGCCGTGCT 436 ||||||||||||||| |||| ||||||||||||||| |||| ||| |||||||||||| Sbjct 35 CAAGACCGCCTCTTGTTCCAACTGAGAAGAACAATG-CGGTTGTTGTGACGCGCCGTGCT 93 Query 437 AGAACAATGGAGGTTAGTTCAAGATATAGATCACCGACTCCTACTAAAACTAGGAGATGT 496 ||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||| Sbjct 94 AGAACAATGGAGGTTAGTTTAAGATACAGATCACCTACTCCTACTAAAACTCGGAGATGT 153 Query 497 CCTTCACCTATTGTCACCAGGACTGCGCCTTCTTCATCAC-CTGAATCGTTCT-T-GAAA 553 |||||||||| |||||||||||||| | || ||||| | | || |||| ||| | |||| Sbjct 154 CCTTCACCTAATGTCACCAGGACTGTGTCTCCTTCAGC-CTCTCAATC--TCTGTCGAAA 210 Query 554 AGAGCGGTTTCAGCGGAGAGGAACCGTGGTCCTTCGACACCAACTA---CG------CCG 604 ||||| ||||||||||| ||||| |||||||||||||||||||||| || ||| Sbjct 211 AGAGCTGTTTCAGCGGAAAGGAAACGTGGTCCTTCGACACCAACTACTCCGTCTACACCG 270 Query 605 GTTAGTGATGTATTGGTAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 664 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 GTTAGTGATGTATTGATAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 330 Query 665 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCTGATTCA 724 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 331 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCGGATTCA 390 Query 725 GTGTCAGTTCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGACTGATCGGACA 784 || ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 391 GTCTCAGTGCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGATTGATCGGACA 450 Query 785 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAGTGAGACAACCTCTGTAACA 844 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 451 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAATGAGACAACCTCTGTGTCG 510 Query 845 AGGAAACAAACGCCCGAGAGGAAAAGAAGTCCATTGAAGGGAAAGAATGTGTCTCCTGGT 904 ||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 511 CCTAAACATATGCCCGAGAGGAAAAGAAGTCCACTGAAGGGAAAGAATGTGTCTTCTGGT 570 Query 905 CAATCAGAGAATTCAAAACCTATGGATGG---TTCTCATAGTATGTTAATACCACCACAG 961 ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| Sbjct 571 CAATCAGAGAATTCAAAACCTGTGGATGGTTCTTCTCATAGTAGGTTAATACCACCACAG 630 Query 962 CATCGATGGTCTGGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGGGATAAAGCGGTC 1021 ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 631 CATCGATGGCCTAGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGCGATAAAGCGGTC 690 Query 1022 AGGAGAGTGTCATTGCCTTTGTCCAATAAAAGCTCTAGA------CATAAGAAGTCTTCT 1075 |||||||||||||||||||||||||| |||||||||| | ||| | ||||||||| Sbjct 691 AGGAGAGTGTCATTGCCTTTGTCCAAGAAAAGCTCTAAACCTTTGCATTATAAGTCTTCT 750 Query 1076 AGTGACATA-ACAAGGTTGTTTTCATGTTATGATAATGGTAGACTAGAAGTTTCGTCATC 1134 ||||||||| | ||||||||| || |||||||| |||||| |||||||||||| ||| || Sbjct 751 AGTGACATAGA-AAGGTTGTTGTCTTGTTATGAAAATGGTGGACTAGAAGTTTTGTCTTC 809 Query 1135 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCATTTTTCTACAAGTTCATT 1194 ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || Sbjct 810 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCTTTTTTCTGCAAGTTCGTT 869 Query 1195 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGTACTGCTTCTCCTAGCAGATCCTC 1254 |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| Sbjct 870 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGCGCTGCTTCACCAAGCAGATCCTC 929 Query 1255 ATTTTCATCATCATCATCTTCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 1314 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 930 ATTTTCATCATCATC--C-TCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 986 Query 1315 TATGAGAGGATTGAGTCC-T-----GTGGGAAACCGCTCTTTGGTGAGATCGTCTACACC 1368 |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| Sbjct 987 TATGAGAGGATTGAGTCCTTCAAGAGTGGGAAACCGCTCTTTTGTGAGATCGTCTACACC 1046 Query 1369 GCCATCAAGAGGTGTAAGTCCTTCCCGGATAAGACAAACCGCGCAATCCAGTAGTACCAA 1428 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | | Sbjct 1047 GCCATCAAGAGGTGTAAGTCCTTCCCCGATAAGACAAATCGCGCAATCCAGTAGTAAC-A 1105 Query 1429 C-ACCTCGGTTCTCAGCTTCATTGCGGATGTCAAGAAAGGaaaaaaaGCGACTTACATAG 1487 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1106 CAACCTCGGTTCTTAGCTTCATTGCGGATGTCAAGAAAGGAAAAAAAGCGACTTACATTG 1165 Query 1488 AAGATGTTCATCAACTACGCTTGCTCTATAATC-GATATTCGCAGTGGCGGTTTGCAAAT 1546 ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| Sbjct 1166 AAGATGTTCATCAACTACGCTTGCTCTATAA-CAGATATTCGCAATGGCGGTTTGCAAAT 1224 Query 1547 GCTCGAGCTGAGGGAGTGAGCTATGTTCAAAGCTTGATTGCTAAGGAAACTCTATACAAT 1606 ||||||||||||||||| |||||| |||||||||| || ||| ||||||| ||||||||| Sbjct 1225 GCTCGAGCTGAGGGAGTTAGCTATATTCAAAGCTTAATAGCTGAGGAAACACTATACAAT 1284 Query 1607 GTTTGGCATGCAATATCAGACCTAAGGGATCTAGTGACAACTCAAAGAATTTGTCTCCAA 1666 ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| Sbjct 1285 GTTTGGCATGCAATATCAGACTTAAGGGATCTCGTGACAACACAAAGAATTTGTCTCCAA 1344 Query 1667 CAGTTGAAGCTAGAAATCAAGTTAAG-ATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1725 ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| Sbjct 1345 CAGTTGAAGCTAGAAATCAAGCT-AGAATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1403 Query 1726 GGATTGGGCAATGGTTGAGAGAGAACACATTAGTTCTTTAGCTGGAGCCATTGGAGACTT 1785 ||||||||| ||| |||||||||||||||||||||||||||||||| | ||||| ||||| Sbjct 1404 GGATTGGGCCATGCTTGAGAGAGAACACATTAGTTCTTTAGCTGGAACAATTGGGGACTT 1463 Query 1786 AGAAGCAAATACACTCCGGCTTCCACTAGCCGGAGGAACAAAGGCAGACCTAGGATCTCT 1845 |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1464 GGAAGCAAATACACTTCGGCTTCCACTAGCCGGAGGAACAAAGGCGGACCTCGGATCTCT 1523 Query 1846 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1524 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1583 Query 1906 TTTACATTCGCAGATGGAGGAGATGAACAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1965 | |||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1584 TCTACACTCGCAAATGGAGGAAATGAATAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1643 Query 1966 AACAG-AGAATTTTTTGCTTGACAAATGTGAAAATCT-CTTGGCATCAACTGCAGTCATG 2023 || || |||| ||||||||||||||||| |||||||| || | ||||||||||||||||| Sbjct 1644 AA-AGGAGAACTTTTTGCTTGACAAATGCGAAAATCTTCT-GACATCAACTGCAGTCATG 1701 Query 2024 GAGATAGAAGAGCGTAGCCTCAAGACTCATCTGATACAAAAGAAGCAAGAAG-A-A-GAA 2080 |||||||||||| | ||||||||||||||| |||||||||||||| |||||| | | ||| Sbjct 1702 GAGATAGAAGAGAGAAGCCTCAAGACTCATATGATACAAAAGAAGAAAGAAGCAGAAGAA 1761 Query 2081 GTAAGAGATGATGCAGAGTCTTCTCCATTGTTGCCATTAAGCAAGTTTCAATGGCCTTAA 2140 |||||| |||||||||||||| | | ||| ||| ||||||||||| ||| |||||||||| Sbjct 1762 GTAAGAAATGATGCAGAGTCT-C-C-ATTATTGACATTAAGCAAGATTCCATGGCCTTAA 1818 > Ahg491681 jgi|Araly1|491681|fgenesh2_kg.7__1114__AT4G30710.2 Length=2703 Score = 350 bits (189), Expect = 3e-95 Identities = 494/633 (78%), Gaps = 54/633 (9%) Strand=Plus/Plus Query 394 TCCATCTGAGAAGAACAATGTAGGTT-CTGTCACGCGCCGTGCTAGAACAATGGAGGTTA 452 |||||| ||||||||||||| | || ||| ||| |||||| || |||||| |||||| | Sbjct 575 TCCATCCGAGAAGAACAATGCA-CTTGCTGCCACTCGCCGTCCTCGAACAACGGAGGTCA 633 Query 453 GTTCAAGATATAGATCACCGACTCCTACTAAAACTAGGAGATGTCCTTCACCTATTGTCA 512 |||||||||| |||||||| || || || ||||| || |||| ||||| || | |||| Sbjct 634 GTTCAAGATACAGATCACCAACGCCAACCAAAACCGGGCGATGCCCTTCCCCAAGCGTCA 693 Query 513 CCAGGACTGCG-C-CT-TCTTC-ATCACCTGAATC-GT-TCTTG--AAAAGAGCGGTTTC 564 | ||| | || | | ||||| | | || |||| || | || |||||||| ||||| Sbjct 694 CAAGG-C--CGACAGTGTCTTCAAGC-TCTCAATCTGTGGC-TGCAAAAAGAGCAGTTTC 748 Query 565 AGCGGAGAGGAACCGTGGTCCTTCGACACCA--A-CTACG-CCGGT---T--A-G-TGAT 613 ||| |||||||| | ||||||| |||||| | || || | || | | | ||| Sbjct 749 AGCAGAGAGGAA--G-CGTCCTTCAACACCACCATCTCCGACTAGTCCCTCCACGCCGAT 805 Query 614 --GT-A-TTG---GTAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTACC 666 || | ||| |||| ||||| | ||| |||||||| |||||||| ||||||||||| Sbjct 806 ACGTGACTTGTCTATAGACTTACCAGCTTCATCTAGGAGGCTATCTACAGGTCGTTTACC 865 Query 667 TGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCTGATTCAGT 726 |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 866 TGAAAGCTTATGGCCTTCCACTATGAGAAGCCTCAGTGTTTCGTTTCAGTCGGATTCAGT 925 Query 727 GTCAGTTCCTGTTAGTAAGAAGGAGAAACCGCTT-GTTACTTCTTC-GACTGATCGGACA 784 ||||| |||||||||||||||||||||||| || || | |||||| | |||||| ||| Sbjct 926 CTCAGTGCCTGTTAGTAAGAAGGAGAAACCGGTTAGT-AGTTCTTCTGT-TGATCGAACA 983 Query 785 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAG-TGAGACAACCTCTGTAAC 843 |||||||| | | ||||||||||||| || ||||| || | ||| || |||||| || | Sbjct 984 TTGAGACC-T-T-CTTCGAATATAGCTCAGAAGCATAAG-GCTGAAACGACCTCTATATC 1039 Query 844 AAGGAAACAAACGCCCGAGAGGAAAAGAAGTCCATTGAA-GGGAAAGAATG-TGTCTCCT 901 ||| |||| ||||| |||||||| ||||||||||||| ||||| |||| ||| || | Sbjct 1040 AAGAAAACCTACGCCAGAGAGGAAGGGAAGTCCATTGAAAGGGAA-GAATAATGTATC-T 1097 Query 902 GGTCAATCAGAGAATTCAAAACCTATGGATGGTTCTCATAGTATGTTAATACCACCACAG 961 | || ||||||||||| |||||| | |||||| |||| ||| ||| ||| | |||| Sbjct 1098 GATCTTTCAGAGAATTCGAAACCTGTAGATGGTCCTCACAGTCGGTTGATAG-A--ACAG 1154 Query 962 CATCGATGGTCTGGTCGAATTAGGGGGAACAGA 994 ||||| ||| || || ||||| || |||| ||| Sbjct 1155 CATCGGTGGCCTAGTAGAATT-GGTGGAA-AGA 1185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80522777930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5