BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24070.1
Length=2140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320214 jgi|Araly1|320214|fgenesh1_pm.C_scaffold_4000271 2433 0.0
Ahg491681 jgi|Araly1|491681|fgenesh2_kg.7__1114__AT4G30710.2 350 3e-95
> Ahg320214 jgi|Araly1|320214|fgenesh1_pm.C_scaffold_4000271
Length=1818
Score = 2433 bits (1317), Expect = 0.0
Identities = 1648/1800 (92%), Gaps = 53/1800 (3%)
Strand=Plus/Plus
Query 378 CAAGACCGCCTCTTGCTCCATCTGAGAAGAACAATGTAGGTT-CTGTCACGCGCCGTGCT 436
||||||||||||||| |||| ||||||||||||||| |||| ||| ||||||||||||
Sbjct 35 CAAGACCGCCTCTTGTTCCAACTGAGAAGAACAATG-CGGTTGTTGTGACGCGCCGTGCT 93
Query 437 AGAACAATGGAGGTTAGTTCAAGATATAGATCACCGACTCCTACTAAAACTAGGAGATGT 496
||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||
Sbjct 94 AGAACAATGGAGGTTAGTTTAAGATACAGATCACCTACTCCTACTAAAACTCGGAGATGT 153
Query 497 CCTTCACCTATTGTCACCAGGACTGCGCCTTCTTCATCAC-CTGAATCGTTCT-T-GAAA 553
|||||||||| |||||||||||||| | || ||||| | | || |||| ||| | ||||
Sbjct 154 CCTTCACCTAATGTCACCAGGACTGTGTCTCCTTCAGC-CTCTCAATC--TCTGTCGAAA 210
Query 554 AGAGCGGTTTCAGCGGAGAGGAACCGTGGTCCTTCGACACCAACTA---CG------CCG 604
||||| ||||||||||| ||||| |||||||||||||||||||||| || |||
Sbjct 211 AGAGCTGTTTCAGCGGAAAGGAAACGTGGTCCTTCGACACCAACTACTCCGTCTACACCG 270
Query 605 GTTAGTGATGTATTGGTAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 664
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GTTAGTGATGTATTGATAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTA 330
Query 665 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCTGATTCA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 331 CCTGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCGGATTCA 390
Query 725 GTGTCAGTTCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGACTGATCGGACA 784
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 391 GTCTCAGTGCCTGTTAGTAAGAAGGAGAAACCGCTTGTTACTTCTTCGATTGATCGGACA 450
Query 785 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAGTGAGACAACCTCTGTAACA 844
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 451 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAATGAGACAACCTCTGTGTCG 510
Query 845 AGGAAACAAACGCCCGAGAGGAAAAGAAGTCCATTGAAGGGAAAGAATGTGTCTCCTGGT 904
||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 511 CCTAAACATATGCCCGAGAGGAAAAGAAGTCCACTGAAGGGAAAGAATGTGTCTTCTGGT 570
Query 905 CAATCAGAGAATTCAAAACCTATGGATGG---TTCTCATAGTATGTTAATACCACCACAG 961
||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 571 CAATCAGAGAATTCAAAACCTGTGGATGGTTCTTCTCATAGTAGGTTAATACCACCACAG 630
Query 962 CATCGATGGTCTGGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGGGATAAAGCGGTC 1021
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 631 CATCGATGGCCTAGTCGAATTAGGGGGAACAGAAGCTTTGATCTTGGCGATAAAGCGGTC 690
Query 1022 AGGAGAGTGTCATTGCCTTTGTCCAATAAAAGCTCTAGA------CATAAGAAGTCTTCT 1075
|||||||||||||||||||||||||| |||||||||| | ||| | |||||||||
Sbjct 691 AGGAGAGTGTCATTGCCTTTGTCCAAGAAAAGCTCTAAACCTTTGCATTATAAGTCTTCT 750
Query 1076 AGTGACATA-ACAAGGTTGTTTTCATGTTATGATAATGGTAGACTAGAAGTTTCGTCATC 1134
||||||||| | ||||||||| || |||||||| |||||| |||||||||||| ||| ||
Sbjct 751 AGTGACATAGA-AAGGTTGTTGTCTTGTTATGAAAATGGTGGACTAGAAGTTTTGTCTTC 809
Query 1135 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCATTTTTCTACAAGTTCATT 1194
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 810 AACAACTTCAGAAGATAGTAGTAGCACTGAGTCTCTCAAGCTTTTTTCTGCAAGTTCGTT 869
Query 1195 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGTACTGCTTCTCCTAGCAGATCCTC 1254
|||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 870 ACCTAGGTTGCATCCAATGTCTGCTCCTGGATCACGCGCTGCTTCACCAAGCAGATCCTC 929
Query 1255 ATTTTCATCATCATCATCTTCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 1314
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 930 ATTTTCATCATCATC--C-TCTAATTCTCGAGGCATGAGTCCTTCAAGAGGAGTGAGTCC 986
Query 1315 TATGAGAGGATTGAGTCC-T-----GTGGGAAACCGCTCTTTGGTGAGATCGTCTACACC 1368
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 987 TATGAGAGGATTGAGTCCTTCAAGAGTGGGAAACCGCTCTTTTGTGAGATCGTCTACACC 1046
Query 1369 GCCATCAAGAGGTGTAAGTCCTTCCCGGATAAGACAAACCGCGCAATCCAGTAGTACCAA 1428
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
Sbjct 1047 GCCATCAAGAGGTGTAAGTCCTTCCCCGATAAGACAAATCGCGCAATCCAGTAGTAAC-A 1105
Query 1429 C-ACCTCGGTTCTCAGCTTCATTGCGGATGTCAAGAAAGGaaaaaaaGCGACTTACATAG 1487
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1106 CAACCTCGGTTCTTAGCTTCATTGCGGATGTCAAGAAAGGAAAAAAAGCGACTTACATTG 1165
Query 1488 AAGATGTTCATCAACTACGCTTGCTCTATAATC-GATATTCGCAGTGGCGGTTTGCAAAT 1546
||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1166 AAGATGTTCATCAACTACGCTTGCTCTATAA-CAGATATTCGCAATGGCGGTTTGCAAAT 1224
Query 1547 GCTCGAGCTGAGGGAGTGAGCTATGTTCAAAGCTTGATTGCTAAGGAAACTCTATACAAT 1606
||||||||||||||||| |||||| |||||||||| || ||| ||||||| |||||||||
Sbjct 1225 GCTCGAGCTGAGGGAGTTAGCTATATTCAAAGCTTAATAGCTGAGGAAACACTATACAAT 1284
Query 1607 GTTTGGCATGCAATATCAGACCTAAGGGATCTAGTGACAACTCAAAGAATTTGTCTCCAA 1666
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 1285 GTTTGGCATGCAATATCAGACTTAAGGGATCTCGTGACAACACAAAGAATTTGTCTCCAA 1344
Query 1667 CAGTTGAAGCTAGAAATCAAGTTAAG-ATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1725
||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 1345 CAGTTGAAGCTAGAAATCAAGCT-AGAATCCATCTTAAATGATCAGATGGTTTGCCTTGA 1403
Query 1726 GGATTGGGCAATGGTTGAGAGAGAACACATTAGTTCTTTAGCTGGAGCCATTGGAGACTT 1785
||||||||| ||| |||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 1404 GGATTGGGCCATGCTTGAGAGAGAACACATTAGTTCTTTAGCTGGAACAATTGGGGACTT 1463
Query 1786 AGAAGCAAATACACTCCGGCTTCCACTAGCCGGAGGAACAAAGGCAGACCTAGGATCTCT 1845
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1464 GGAAGCAAATACACTTCGGCTTCCACTAGCCGGAGGAACAAAGGCGGACCTCGGATCTCT 1523
Query 1846 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 GAAGTTAGCTATGTCCTCAGCTCTTGATGTAATGCAGAGTATGGGATCATCCATCTGGTC 1583
Query 1906 TTTACATTCGCAGATGGAGGAGATGAACAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1965
| |||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1584 TCTACACTCGCAAATGGAGGAAATGAATAAACTTGTTTCGGATCTCGCTGTTATAGCTAA 1643
Query 1966 AACAG-AGAATTTTTTGCTTGACAAATGTGAAAATCT-CTTGGCATCAACTGCAGTCATG 2023
|| || |||| ||||||||||||||||| |||||||| || | |||||||||||||||||
Sbjct 1644 AA-AGGAGAACTTTTTGCTTGACAAATGCGAAAATCTTCT-GACATCAACTGCAGTCATG 1701
Query 2024 GAGATAGAAGAGCGTAGCCTCAAGACTCATCTGATACAAAAGAAGCAAGAAG-A-A-GAA 2080
|||||||||||| | ||||||||||||||| |||||||||||||| |||||| | | |||
Sbjct 1702 GAGATAGAAGAGAGAAGCCTCAAGACTCATATGATACAAAAGAAGAAAGAAGCAGAAGAA 1761
Query 2081 GTAAGAGATGATGCAGAGTCTTCTCCATTGTTGCCATTAAGCAAGTTTCAATGGCCTTAA 2140
|||||| |||||||||||||| | | ||| ||| ||||||||||| ||| ||||||||||
Sbjct 1762 GTAAGAAATGATGCAGAGTCT-C-C-ATTATTGACATTAAGCAAGATTCCATGGCCTTAA 1818
> Ahg491681 jgi|Araly1|491681|fgenesh2_kg.7__1114__AT4G30710.2
Length=2703
Score = 350 bits (189), Expect = 3e-95
Identities = 494/633 (78%), Gaps = 54/633 (9%)
Strand=Plus/Plus
Query 394 TCCATCTGAGAAGAACAATGTAGGTT-CTGTCACGCGCCGTGCTAGAACAATGGAGGTTA 452
|||||| ||||||||||||| | || ||| ||| |||||| || |||||| |||||| |
Sbjct 575 TCCATCCGAGAAGAACAATGCA-CTTGCTGCCACTCGCCGTCCTCGAACAACGGAGGTCA 633
Query 453 GTTCAAGATATAGATCACCGACTCCTACTAAAACTAGGAGATGTCCTTCACCTATTGTCA 512
|||||||||| |||||||| || || || ||||| || |||| ||||| || | ||||
Sbjct 634 GTTCAAGATACAGATCACCAACGCCAACCAAAACCGGGCGATGCCCTTCCCCAAGCGTCA 693
Query 513 CCAGGACTGCG-C-CT-TCTTC-ATCACCTGAATC-GT-TCTTG--AAAAGAGCGGTTTC 564
| ||| | || | | ||||| | | || |||| || | || |||||||| |||||
Sbjct 694 CAAGG-C--CGACAGTGTCTTCAAGC-TCTCAATCTGTGGC-TGCAAAAAGAGCAGTTTC 748
Query 565 AGCGGAGAGGAACCGTGGTCCTTCGACACCA--A-CTACG-CCGGT---T--A-G-TGAT 613
||| |||||||| | ||||||| |||||| | || || | || | | | |||
Sbjct 749 AGCAGAGAGGAA--G-CGTCCTTCAACACCACCATCTCCGACTAGTCCCTCCACGCCGAT 805
Query 614 --GT-A-TTG---GTAGATTTACCGGTTTCTTCTAGGAGACTATCTACTGGTCGTTTACC 666
|| | ||| |||| ||||| | ||| |||||||| |||||||| |||||||||||
Sbjct 806 ACGTGACTTGTCTATAGACTTACCAGCTTCATCTAGGAGGCTATCTACAGGTCGTTTACC 865
Query 667 TGAAAGCTTATGGCCTTCTACTATGAGAAGCCTCAGTGTTTCTTTTCAGTCTGATTCAGT 726
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 866 TGAAAGCTTATGGCCTTCCACTATGAGAAGCCTCAGTGTTTCGTTTCAGTCGGATTCAGT 925
Query 727 GTCAGTTCCTGTTAGTAAGAAGGAGAAACCGCTT-GTTACTTCTTC-GACTGATCGGACA 784
||||| |||||||||||||||||||||||| || || | |||||| | |||||| |||
Sbjct 926 CTCAGTGCCTGTTAGTAAGAAGGAGAAACCGGTTAGT-AGTTCTTCTGT-TGATCGAACA 983
Query 785 TTGAGACCGTCTTCTTCGAATATAGCGCATAAGCAGCAGAG-TGAGACAACCTCTGTAAC 843
|||||||| | | ||||||||||||| || ||||| || | ||| || |||||| || |
Sbjct 984 TTGAGACC-T-T-CTTCGAATATAGCTCAGAAGCATAAG-GCTGAAACGACCTCTATATC 1039
Query 844 AAGGAAACAAACGCCCGAGAGGAAAAGAAGTCCATTGAA-GGGAAAGAATG-TGTCTCCT 901
||| |||| ||||| |||||||| ||||||||||||| ||||| |||| ||| || |
Sbjct 1040 AAGAAAACCTACGCCAGAGAGGAAGGGAAGTCCATTGAAAGGGAA-GAATAATGTATC-T 1097
Query 902 GGTCAATCAGAGAATTCAAAACCTATGGATGGTTCTCATAGTATGTTAATACCACCACAG 961
| || ||||||||||| |||||| | |||||| |||| ||| ||| ||| | ||||
Sbjct 1098 GATCTTTCAGAGAATTCGAAACCTGTAGATGGTCCTCACAGTCGGTTGATAG-A--ACAG 1154
Query 962 CATCGATGGTCTGGTCGAATTAGGGGGAACAGA 994
||||| ||| || || ||||| || |||| |||
Sbjct 1155 CATCGGTGGCCTAGTAGAATT-GGTGGAA-AGA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80522777930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5