BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24080.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481265 jgi|Araly1|481265|fgenesh2_kg.4__325__AT2G24080.1 789 0.0
Ahg932414 jgi|Araly1|932414|scaffold_400402.1 575 3e-163
Ahg313478 jgi|Araly1|313478|fgenesh1_pm.C_scaffold_1002258 211 8e-54
Ahg343060 jgi|Araly1|343060|fgenesh1_pg.C_scaffold_3002823 113 2e-24
> Ahg481265 jgi|Araly1|481265|fgenesh2_kg.4__325__AT2G24080.1
Length=1074
Score = 789 bits (427), Expect = 0.0
Identities = 634/730 (87%), Gaps = 30/730 (4%)
Strand=Plus/Plus
Query 411 CAAGAATGGTGACTTTGTTGTTGTCTGGCAATTTGAGCAAGGCCAATTTTTAGGGTTTTG 470
||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CAAGAATGGAGACTATGTTGTTGTGTGGCAATTTGAGCAAGGCCAATTTTTAGGGTTTTG 419
Query 471 CAAGAAAGGAGATTTACATTACCGTGATATTCCAATACGTGTCGATGTTCGGAGGGAGTT 530
||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 420 CAAGAAAGGGGATTTACATTACCGCGATATTCCAATACGGGTCGATGTTCGCAGGGAGTT 479
Query 531 CCGAGGCCTACAAGATGTGGTGCTCAAGGGTTACAATCTTTACAT-TCTGGTGAAC-CGT 588
|||||||||| ||||||||||||| || ||||||||||||||| | |||||| || |||
Sbjct 480 CCGAGGCCTAAAAGATGTGGTGCTTAAAGGTTACAATCTTTAC-TCCCTGGTG-ACTCGT 537
Query 589 AGCTTCATTCGACACATTGATTTGTC---CGGACAAGATGGTTTCAAGAATGTGTCCGAA 645
| ||||||||||||| | |||||||| |||||||||||||||||| |||||||||
Sbjct 538 AACTTCATTCGACACCTGGATTTGTCTGGTGGACAAGATGGTTTCAAGGATGTGTCCGTG 597
Query 646 ACCCCTAGGTTTCCAA--T--AT--CGGTTTCAGCCTTTGGGCGTGATTTAGGAATATCG 699
| |||||||||||||| | || | | | | |||| | ||| |||||| || | |
Sbjct 598 ATCCCTAGGTTTCCAATGTGGATGCCAGATAC-GCCTAT-GGC-TGATTTTGG--GA-CA 651
Query 700 GAAATCAAAAAGGTCATCTCTTTTAGCGATAGCATTGCTGTTACAACATCAGGAGATGTT 759
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 652 GAAGGCAAAAAGGTCATCTCTTTTAGCGATAGAATTGCTGTTACAACATCAGGAGAGGTT 711
Query 760 TTGTTGGTCTTTACCACGGCTTTCGAGTCACTCGGTGAAAGGTCTAGGATCTTCCACGTC 819
|||||||||||||||| ||||| |||| | || ||||||||||||||||||||| ||||
Sbjct 712 TTGTTGGTCTTTACCAAGGCTTACGAGCCTTTCTGTGAAAGGTCTAGGATCTTCCGCGTC 771
Query 820 TACAAGAGGGATCCGGAAAAAGAGCTA-AAAGGAAATATATGTGGA-ACCAGTCTTGTTG 877
|||||||||||||| ||||||||| | | |||| || || || || |||||||
Sbjct 772 TACAAGAGGGATCC---TAAAGAGCTAGACCCG-AATACAT-ACGACACTAGGCTTGTTG 826
Query 878 AGGTGGAATCTATAGGTGACGAGGCCCTGTTTTTCGATTTCGGTATCACCGTGCCTGCTG 937
|| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 827 AGATGGAATCTATAGGTGATGAAGCCCTGTTTTTCGATTTGGGTATCACCGTGCCTGCTG 886
Query 938 ACCATACCCTTGGTATTGAGCCTAATTGCATCTATTTCACTCGTAATGACCGTTTCGGTC 997
||| ||||||||||||||||||||| | |||||||||||| |||| ||||||||||||||
Sbjct 887 ACCTTACCCTTGGTATTGAGCCTAACTCCATCTATTTCACCCGTAGTGACCGTTTCGGTC 946
Query 998 ACAAGGACGGTTCCATTCCATGCCTAG-TCGACATATGTGTGTACAACATTGCAACAAGG 1056
||||| || || |||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 947 ACAAGAACATTTGCATTCCATGCGT-GATCGACATATGTGTGTACAACATTGCAACAAGG 1005
Query 1057 ACCTTCAAACGCTTCCCTAGTCTGTCCAACTTAAAACTCAAGGATGCT-ATGTGGTTTCT 1115
||| ||||||||||||| | ||| ||||||||||| ||||||||||| | |||||||||
Sbjct 1006 ACCGTCAAACGCTTCCCCAATCTCTCCAACTTAAATCTCAAGGATGCGCA-GTGGTTTCT 1064
Query 1116 CCCCTCTTGA 1125
||||||||||
Sbjct 1065 CCCCTCTTGA 1074
Score = 459 bits (248), Expect = 3e-128
Identities = 303/330 (92%), Gaps = 2/330 (1%)
Strand=Plus/Plus
Query 50 CAAAACGAAGCGGGAGTCCTAAATATAATGAGCGTGCTAAGACCCCACGTCTGGATCCAA 109
|||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||
Sbjct 35 CAAAACGAAGCGGGAGTCCTAAATATAATGAGTGTGCTAAGGCCCCGCGTGTGGATCCAA 94
Query 110 AACTCGGATCTCCGTTGCTGTTGTTGTCTCCAGAAGAGGGTGGTTTTCGTCTGTACAAGC 169
|| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 95 AAAGCGGATCTCCGATGCTGTTGTTGTCTCCAGAAGAGGGTGGTATTCGTGTGTGCAAGC 154
Query 170 CAGACGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTAGCAA 229
|||||||||||| |||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 155 CAGACGAAGATATGTTTTACGAGACGACGACTGACTTTTCAGGGTATCGATTCCTGGCAA 214
Query 230 GCTCGGGTAAGTGGTTCCTAGTGGTAGATTCTAGATGGGATCTCTATATCATAGATGTGT 289
||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 215 GCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTCGATCGGATCTCTATATCATAGATGTGT 274
Query 290 TTAGCGATGAGAGGATC-AGTCTTCCACCTCTAGAGTCAACCCAGGGTGGCCTTTATATG 348
||||||| || |||||| | |||||||||| ||||||||| | | |||||||||||||||
Sbjct 275 TTAGCGAGGATAGGATCCA-TCTTCCACCTTTAGAGTCAATCAACGGTGGCCTTTATATG 333
Query 349 GTTGAGCGAGAAGGATCTAATGACTTCAAG 378
|||||||||| |||||||||||| ||||||
Sbjct 334 GTTGAGCGAGTAGGATCTAATGAATTCAAG 363
> Ahg932414 jgi|Araly1|932414|scaffold_400402.1
Length=874
Score = 575 bits (311), Expect = 3e-163
Identities = 443/504 (88%), Gaps = 19/504 (4%)
Strand=Plus/Plus
Query 50 CAAAACGAAGCGGGAGTCCTAAATATAATGAGCGTGCTAAGACCCCACGTCTGGATCCAA 109
|||||||||||||||||||||||||||||||| |||||||| || |||| | ||
Sbjct 55 CAAAACGAAGCGGGAGTCCTAAATATAATGAGTGTGCTAAGGCCTTGCGTC-CG--CCTT 111
Query 110 AACTCGGATCTCCGTTGCTGTTGTTGTCTCCAGAAGAGGGTGGTT-TTCGTCTGTACAAG 168
| |||||||| || ||||| |||||| |||||||||||||| || |||| ||||||
Sbjct 112 TGGTTGGATCTCCACTGTTGTTGCTGTCTCAAGAAGAGGGTGGTTGTT-GTCTATACAAG 170
Query 169 CCAGACGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCTAGCA 228
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 171 CCAGAAGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAAGGTATCGATTCCTGGCA 230
Query 229 AGCTCGGGTAAGTGGTTCCTAGTGGTAGATTCTAGATGGGATCTCTATATCATAGATGTG 288
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 231 AGCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTAGATCGGATCTCTATATCATAGATGTG 290
Query 289 TTTAGCGATGAGAGGATC-AGTCTTCCACCTCTAGAGTCAACCCAGGGTGGCCTTTATAT 347
|||||||||||||||||| | |||||||||| ||||||||| | | ||||||||||||||
Sbjct 291 TTTAGCGATGAGAGGATCCA-TCTTCCACCTTTAGAGTCAATCAACGGTGGCCTTTATAT 349
Query 348 GGTTGAGCGAGAAGGATCTAATGACTTCAAGGTTACGTTAATTGGAGGCAGTCTGAAAGA 407
||||||||||| |||||||||||| ||||||||||| |||||| ||| | |
Sbjct 350 GGTTGAGCGAGTAGGATCTAATGAATTCAAGGTTACCTTAATT--AGG--G-C------- 397
Query 408 CGACAAGAATGGTGACTTTGTTGTTGTCTGGCAATTTGAGCAAGGCCAATTTTTAGGGTT 467
|||||||||||| |||||||||||||| |||||||||||| | |||||||||||||| ||
Sbjct 398 CGACAAGAATGGAGACTTTGTTGTTGTGTGGCAATTTGAGGATGGCCAATTTTTAGGCTT 457
Query 468 TTGCAAGAAAGGAGATTTACATTACCGTGATATTCCAATACGTGTCGATGTTCGGAGGGA 527
|||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 458 TTGCAAGAAAGGGGATTTACATTACCGCGATATTCCAATACGGGTCGATGTTCGCAGGGA 517
Query 528 GTTCCGAGGCCTACAAGATGTGGT 551
||| |||||| || ||||||||||
Sbjct 518 GTTTCGAGGCTTAAAAGATGTGGT 541
> Ahg313478 jgi|Araly1|313478|fgenesh1_pm.C_scaffold_1002258
Length=1305
Score = 211 bits (114), Expect = 8e-54
Identities = 213/261 (82%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 106 CCAAAACTCGGATCTCCGTTGCTGTTG-TTGTCTCCAGAAGAGGGTGGTTTTCGTCTGTA 164
|||||| ||||||| || |||||| || | | | ||||||||| ||||| |||| | ||
Sbjct 256 CCAAAATTCGGATCACCATTGCTGATGCTAAT-TACAGAAGAGGATGGTTGTCGTATCTA 314
Query 165 CAAGCCAGACGAAGATAAGTTTTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCT 224
||| ||||| || | || | | ||||||||||||||||||||||||||||||||||||||
Sbjct 315 CAACCCAGAAGATGGTATGGTCTACGAGACGAAGAGTGACTTTTCAGGGTATCGATTCCT 374
Query 225 AGCAAGCTCGGGTAAGTGGTTCCTAGTGGTAGATTCT-AGATGGGATCTCTATATCATAG 283
| |||||| ||||||||||| || |||||||||||| | || | | |||||||| |||
Sbjct 375 GGGAAGCTCCGGTAAGTGGTTTCTGGTGGTAGATTCTCA-ATTGAAACTCTATATTGTAG 433
Query 284 ATGTGTTTAGCGATGAGAGGATC-AGTCTTCCACCTCTAGAGTCAACCCAGGGTGGCCTT 342
|||| ||||| || ||||||||| | ||||||||| ||||| ||| | ||| |||||
Sbjct 434 ATGTCTTTAGGGAGGAGAGGATCGA-TCTTCCACCACTAGAATCATTGAAAGGTAGCCTT 492
Query 343 TATATGGTTGAGCGAGAAGGA 363
|||| | ||||||||| ||||
Sbjct 493 TATAAGATTGAGCGAGTAGGA 513
> Ahg343060 jgi|Araly1|343060|fgenesh1_pg.C_scaffold_3002823
Length=864
Score = 113 bits (61), Expect = 2e-24
Identities = 138/173 (80%), Gaps = 14/173 (8%)
Strand=Plus/Plus
Query 161 TGTACAAGCCAGACGAAGATAAGTTTTACGAGA--CG-AAGAGTGACTTTTCAGGG--TA 215
||||||| ||||| ||| | | | ||||| | | || |||| ||||| |||||| ||
Sbjct 35 TGTACAATCCAGAGGAATACAGGATTTAC-AAATCCGTAAGA--GACTTCTCAGGGACTA 91
Query 216 TCGATTCCTAGCAAGCTCGGGTAAGTGGTTCCTAGTGGTAGATTCTAGATGGGATCTCTA 275
| | ||||| |||| ||||||||| ||||| || ||| | ||||||| || |||||||
Sbjct 92 T-G-TTCCTTGCAAACTCGGGTAATTGGTTTCTTGTGATGGATTCTAAATCCAATCTCTA 149
Query 276 TATCATAGATGTGTTTAGCGATGAG-AGGATC-AGTCTTCCACCTCTAGAGTC 326
||||||||||||||||||||| || |||||| | |||||| |||||||||||
Sbjct 150 TATCATAGATGTGTTTAGCGA-GAATAGGATCGA-TCTTCCGCCTCTAGAGTC 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5