BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24100.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481267 jgi|Araly1|481267|fgenesh2_kg.4__327__AT2G24100.1 2386 0.0
Ahg491676 jgi|Araly1|491676|fgenesh2_kg.7__1109__AT4G30780.1 484 6e-136
> Ahg481267 jgi|Araly1|481267|fgenesh2_kg.4__327__AT2G24100.1
Length=1607
Score = 2386 bits (1292), Expect = 0.0
Identities = 1470/1553 (95%), Gaps = 24/1553 (2%)
Strand=Plus/Plus
Query 93 AACAATTTTCCGGTGAAGTTAGAGATCATTGAAGATTCTCTTGAAGAAGAACACGCTCCT 152
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 66 AACAATTTTCCGGTGAAGTTAGAGATCGTTGAAGATTTTCTTGAAGAAGAACACGCTCCT 125
Query 153 CTCAACAAACGATCCAAGCTATGGAG---CAATGGAACAAGTGTCTCTAAGTTTAGTCTA 209
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 126 CTCAACAAACGATCAAAGATATGGAGCAACAATGGAACAAGTGTCTCTAAGTTTAGTCTA 185
Query 210 CTTGAAGAGCCAAGTCCTTTGGGGTTGAGTTTAAAAAAGAGCCCATCTTTTCAAGAACTG 269
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 186 CTTGAAGAGCCAAGTCCTTTGGGTTTGAGTTTAAAGAAGAGCCCATCTTTTCAAGAACTG 245
Query 270 ATTGAGATGAAACTTTCTCAAAGTGGTGATGACTCAAATTCGGTTAAGAAAGAAAGTTTT 329
||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 246 ATTCAGATGAAACTTTCTCAAAGTGGTGATGACACAAAGTCGGTTAAGAAAGAAAGTTTT 305
Query 330 GGTTTTGGTGGTGTAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATT 389
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 GG-TTT--TGGTATAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACGGTT 362
Query 390 CTCAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 449
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTTAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGT 422
Query 450 TACTTTGCAAAACATAAACTTGTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 509
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 423 TATTTTGCAAAGCATAAACTTGTATGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATT 482
Query 510 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTGCCAGAGGATGAACCTGGA 569
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 483 GAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTATCGGAAGATGAACCTGGA 542
Query 570 ACCCTGACTATTGTGCTGGCTAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCT 629
|| |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 543 ACGCTGACTATCGTGCTGGCTAGGCGGCCGTTGTTTTTTAGGGAAACTAATCCGCAGCCT 602
Query 630 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAAC 689
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 603 AGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCCAGCATGAAC 662
Query 690 AGGCAACATTTTCTGCAGTGTCCCCCAGGGATTA-TGAACAAACATTTTGAGAAGCTTGT 748
||||||||||||||||||||| ||||||||| || |||| |||||||| |||||||||||
Sbjct 663 AGGCAACATTTTCTGCAGTGTGCCCCAGGGA-TATTGAATAAACATTTCGAGAAGCTTGT 721
Query 749 TCAATGTGATCATCGCTTGTTCTGTCTAAGCCGGCAGCCAGAGATAAACTTGGCCGCACC 808
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 722 CCAATGTGATCATCGCTTGTTCTGTCTAAGCCGACAGCCAGAGATAAATTTGGCATCACC 781
Query 809 GTTCTTTGATTCACGACTATCTATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 868
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTTCTTTGATTCACGACAATCAATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATAT 841
Query 869 TGCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGTCTCTATCTCATGACGCACT 928
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 842 TGCATCTCCTGTTGGGGCTCAGTCGTCATCAGAACATGTGTCTCTATCTCATGACGCACT 901
Query 929 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATCGAAGGAGTTGGTGGTTCCATTGATTC 988
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 902 ATCGCCTAGCTCAGTGATGGATGCTCGTGCAATTGAAGGAGTTGGTGGTTCCGTTGATTC 961
Query 989 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAATCTATCTCGAT 1048
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 962 GAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAGTCTATCTCGAT 1021
Query 1049 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAGTTTGAGGA 1108
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1022 GAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAATTTGAGGA 1081
Query 1109 AATGAAACAGTTACTGCTAAGTGACAACACTCAAACCGATCCATCTGATGAGAAGTCTGT 1168
|||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1082 AATGAAACAGATACTGCTAAGTG---ACACTCAAACCGATCCATCGGATGAGAAGTCTGT 1138
Query 1169 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAACTCACAGCTCAA 1228
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1139 CATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAATTCACATCTCAA 1198
Query 1229 TATCGAAACTGCTGATACC-G-AAAGAGTTGTTGGGGTCGATAAC-A-A-TAGACACATG 1283
|||||||| |||||| ||| | |||||| |||||||||||||| | | ||||||||||
Sbjct 1199 TATCGAAAATGCTGACACCGGTAAAGAG--ATTGGGGTCGATAACAATAGTAGACACATG 1256
Query 1284 CCCGAAGGAGGCAAAAGAGTTGTTGACCCTGCTTCAAGCAGCAAGCCACTACAAGGGATG 1343
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1257 ACCGAAGGAGGCAAAAGAGTTGTTGATCCTGCTTCAAGCAGCAAGCCACTACAGGGGATG 1316
Query 1344 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTGCACCTTCCTCGAATCACATCACTCCCA 1403
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1317 TCAAGGAAAGACTCATTCAGTGATTTGCTGGTACACCTTCCTCGGATCACATCCCTCCCA 1376
Query 1404 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AAGTTCTTGTTCAACATTTCAGAAGAAGACTAGTAGATAGTGAACCGAAAAGTTCTTGTT 1436
Query 1464 CTAGGAATCTTGAACAAGTAGCTGTAAATCAAATTATCTCTCT--C--GTTCTTAAGGAT 1519
|||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||
Sbjct 1437 CTAGGAATCTTGAACAAGTAGCTGTAAATCGAATTATCTCTCTAGCTCGTTCATAAGGAT 1496
Query 1520 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTGGAGGAACTTTTGTGTTTGATGATGAATCCTTGTAAAGAAATGCTTTTGTGATGGCGT 1556
Query 1580 TTTCTAAAAGCCATTTCtttttttGAAACATTAACAAAACTTTATTATTGCTT 1632
|||||||||||||||| | |||| || ||||||||||||||||| ||||||||
Sbjct 1557 TTTCTAAAAGCCATTT-TGTTTT-GAGACATTAACAAAACTTTAATATTGCTT 1607
Score = 100 bits (54), Expect = 3e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 1 ACTCTCTTAGATTCTCAGGGTTTTGTG-TTTTTTGGATGGTGGAGATGATGAGATCAGAG 59
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1 ACTCTCTTAGATTCTCAGGGTTTTGTGATTTTTT-CATGGTGGAGATGATGAGATCAGAG 59
Query 60 AATC 63
||||
Sbjct 60 AATC 63
> Ahg491676 jgi|Araly1|491676|fgenesh2_kg.7__1109__AT4G30780.1
Length=2111
Score = 484 bits (262), Expect = 6e-136
Identities = 420/497 (85%), Gaps = 8/497 (2%)
Strand=Plus/Plus
Query 352 TTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATTCTCAGGATTGGTCAATGGGAGT 411
|||||||||| |||||||| |||||||||||| | || | | ||| || || |||||||
Sbjct 532 TTGAGAAGCTGAAAGCTTCCAACTTTCCTGCTTCGCTTTTGAAGATCGGACAGTGGGAGT 591
Query 412 ATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAA-TGTTACTTTGCAAAACATAAACTT 470
|||| || ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 592 ATAAATCGAGGTATGAAGGTGATTTGGTGGC-AAAGTGTTACTTTGCAAAACACAAACTT 650
Query 471 GTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATTGAGATTCAGTGGTCTGATATT 530
|| |||||||| |||||||||||||||||||| || || ||||| || ||||| ||||||
Sbjct 651 GTTTGGGAAGTATTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAATGGTCAGATATT 710
Query 531 ATGGCTTTGAAGGCTAATTTG-CCAGAGGATGAACCTGGAACCCTGACTATTGTGCTGGC 589
|||||||||||||| || || || || || | ||||||||| ||||| | ||||| ||
Sbjct 711 ATGGCTTTGAAGGC-AAACTGTCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTTGC 769
Query 590 TAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCTAGAAAACATACTTTGTGGCA 649
||| | ||| || |||||| | ||||| || || ||||||||||||||||||||||||||
Sbjct 770 TAGACAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAACATACTTTGTGGCA 829
Query 650 GGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAACAGGCAACATTTTCTGCAGTG 709
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct 830 GGCGACATCAGATTTTACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAATG 889
Query 710 TCCCCCAGGGATTATGAACAAACATTTTGAGAAGCTTGTTCAATGTGATCATCG-CTTGT 768
| | | |||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 890 TGCTCAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCT-GT 948
Query 769 TCTGTCTAAGCCGGCAGCCAGAGATAAACT-TGGCCGCACCGTTCTTTGATTCACGACTA 827
|| ||||||||| ||||| |||||| || | | | | || | ||||||| | || | |
Sbjct 949 TCCATCTAAGCCGACAGCCGGAGATAG-CTATTGACTCTCCCTACTTTGATGCGCGGCAA 1007
Query 828 TCTATATTTGAGGATCC 844
||||| |||||||||||
Sbjct 1008 TCTATTTTTGAGGATCC 1024
Score = 145 bits (78), Expect = 1e-33
Identities = 178/223 (80%), Gaps = 20/223 (9%)
Strand=Plus/Plus
Query 852 TCT-GGATCTCATAATATT-GCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGT 909
||| ||| |||| ||| || ||||||||||||||||||||||||||||| || ||| |||
Sbjct 1083 TCTGGGA-CTCAGAAT-TTAGCATCTCCTGTTGGGGCTCAGTCATCATCTGAGCATATGT 1140
Query 910 CTCTATCTCATGACGCACTATCGCCTAGCTCAGTGATGGATGCTCGTGCAA-TCGAAGGA 968
||| |||||||| |||| ||| || ||||||||||| ||||||||||||| | ||||||
Sbjct 1141 ATCTGTCTCATGAAGCACCATCACCCAGCTCAGTGATAGATGCTCGTGCAAAT-GAAGGA 1199
Query 969 GTTGGTGGTTC-----CATTGA-TTCGAGGAATACA-AACGG-TTG-GAGTCAGATAAAA 1019
|||| ||||| || | | ||| || || ||| ||| | ||| | ||||||| ||
Sbjct 1200 ATTGGAGGTTCTGAAGCAGTCAATTCAAG-AA-ACAGAACAGATTGTG-GTCAGATCGAA 1256
Query 1020 ATGCCTGGACTACACCAATCTATCTCGA-TGAACGATTTCCTT 1061
|||||||||||||||||||| || | ||| |||||||||
Sbjct 1257 GCACCTGGACTACACCAATCTATGTC-ACTGAGTGATTTCCTT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5