BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G24130.1
Length=2943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899741 jgi|Araly1|899741|Al_scaffold_0004_391 4429 0.0
> Ahg899741 jgi|Araly1|899741|Al_scaffold_0004_391
Length=2964
Score = 4429 bits (2398), Expect = 0.0
Identities = 2787/2972 (94%), Gaps = 37/2972 (1%)
Strand=Plus/Plus
Query 1 ATGGATTATTGTTCTTTGTTGGTTGTCTCGTTCTTGATCACTGTTATGACCGTTCTTGCT 60
||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCTTGTTCTTTGTTGTTTTTCTTGTTCTTGATCACTGTTATGACCGTTCTTGCT 60
Query 61 TCTAAAGAGAACGATCA--TGA----GCTAA-TAA-AAA--ATCC-T-----CA-A---- 99
||||||||||||||||| | ||| | ||| |||| | || |
Sbjct 61 TCTAAAGAGAACGATCAAATCTCTTTGCTTTCTTTCAAATCATCCATTGTTTCAGATCCT 120
Query 100 -A-A-CTCTCTAAGCAGTTGGATttcttctt-cttcttcttcgtcttctATGCTCGTTGA 155
| | |||||||||||||||| |||| ||| |||||||||| ||||| ||| |||||
Sbjct 121 CATAACTCTCTAAGCAGTTGGGTTTCG-CTTTCTTCTTCTTCTTCTTC---GCTTGTTGA 176
Query 156 TGTTTGTAATTGGTCTGGTGTGAAGTGTAACAAAGAGAGCACTCAAGTAATCGAGCTTGA 215
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGTTTGTAGTTGGTCTGGTGTGAAGTGTAACAAAGAGAGCACTCAAGTAATCGAGCTTGA 236
Query 216 TATCAGTGGTAGAGATCTCGGCGGCGAAATCTCACCGTCGATCGCTAATCTAACCGGTTT 275
||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||
Sbjct 237 TATCAGTGGTAAAGATCTCGGCGGTGAAATCTCACCGTCGATCGCTAAGCTAACCGCTTT 296
Query 276 AACGGTTCTTGATCTTTCGAGAAACTTCTTCGTTGGAAAAATCCCACCTGAGATAGGTTC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 AACGGTTCTTGATCTTTCGAGAAACTTCTTCGTTGGAAAAATCCCACCTGAGATAGGCTC 356
Query 336 ATTGCATGAAACATTGAAGCAGCTAAGTCTCTCTGAGAATCTTTTACATGGAAACATTCC 395
||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 357 ATTGCATAAAACCTTGAAGCAGCTAAGTCTCTCTGAGAATCTTTTACAAGGGGACATTCC 416
Query 396 ACAAGAGCTTGGTTTGCTTAACCGTCTTGTTTATCTCGATCTTGGAAGCAACCGGTTAAA 455
|||||| || |||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 417 ACAAGAACTCGGTTCGCTTAACCGTCTTGTTTATCTCGATCTTGGAAGCAATCGATTAAC 476
Query 456 CGGTTCAATCCCGGTTCAGCTCTTTTGCAACGGCTCTTCTTCATCTCTACAATACATAGA 515
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 477 CGGTTCAATCCCGGTTCAGCTCTTTTGCAACGGTTCTTCTTTATCTCTACAATACATTGA 536
Query 516 CCTTTCCAACAACTCTTTAACCGGAGAGATCCCTTTAAATTACCATTGTCACCTCAAAGA 575
|| |||||||| |||||||||||||| ||||||||||| | |||||||| ||||||||
Sbjct 537 TCTCTCCAACAATTCTTTAACCGGAGAAATCCCTTTAAAGAATCATTGTCAGCTCAAAGA 596
Query 576 ACTTCGGTTTCTTCTTCTCTGGTCCAACAAGCTCACCGGTACTGTCCCGTCTTCTCTCTC 635
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 597 ACTTCGGTTTCTTCTTCTCTGGTCGAACAAGCTCACCGGTACTGTCCCTTCTTCTCTCTC 656
Query 636 AAACTCTACGAATCTCAAGTGGATGGATTTGGAGTCAAATATGTTAAGTGGAGAGTTACC 695
|||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct 657 AAACTCTACGAATCTCAAATGGATGGATTTGGAGTCAAATCTGTTAACCGGAGAGTTACC 716
Query 696 TTCTCAAGTCATAAGCAAGATGCCACAACTTCAGTTTCTTTACCTTTCTTATAACCATTT 755
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 TTCTCAAGTCATAAGCAAGATGCCACATCTTCAGTTTCTTTACCTTTCTTATAACCATTT 776
Query 756 CGTTAGCCACAACAATAACACAAACCTCGAACCTTTTTTCGCCTCTCTCGCCAATTCCTC 815
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 CATTAGCCACAACAATAACACCAACCTCGAACCTTTTTTCGCCTCTCTCGCCAATTCCTC 836
Query 816 TGACCTACAAGAGCTTGAGTTAGCCGGAAACAGCCTCGGAGGAGAGATTACTTCTTCCGT 875
||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 837 TGACCTAGAAGAGCTTGAGTTAGCCGGAAATAGCCTCGGAGGAGAGATTTCTTCTTCCGT 896
Query 876 AAGGCACCTCTCTGTAAATCTTGTGCAGATTCATCTTGATCAAAACCGTATCCATGGCTC 935
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 897 AAGGCACCTCTCTGTAAATCTTGTACAGATTCATCTTGATCAAAACCGTATCCATGGCTC 956
Query 936 TATACCTCCAGAGATATCAAACCTTTTGAACCTAACTCTTCTAAACTTGTCGAGTAACCT 995
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 957 TATACCACCAGAGATATCAAACCTTTTGAACCTAACCCTTCTAAACTTGTCGAGTAACCT 1016
Query 996 CTTGTCCGGTCCTATCCCGCGTGAGCTCTGTAAGCTAAGCAAGCTCGAAAGGGTTTATCT 1055
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 CTTGTCCGGTCCAATCCCGCGTGAGCTCTGTAAGCTAAGCAAGCTTGAAAGGGTTTATCT 1076
Query 1056 CTCGAATAATCACCTAACCGGCGAAATCCCTATGGAACTCGGGGATATTCCTCGCCTTGG 1115
||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1077 CTCGAATAATCACTTAACCGGCGAAATCCCTATGGAACTCGGGGATATACCTCGTCTTGG 1136
Query 1116 TCTTCTTGATGTTTCTAGAAACAATCTTTCTGGTTCAATCCCTGATAGTTTCGGAAACCT 1175
|||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||
Sbjct 1137 TCTTCTTGATGTTTCTAGAAACAAGCTCTCTGGTTCAATCCCTGATAGTTTTGCAAACCT 1196
Query 1176 TTCTCAGCTGAGAAGACTTCTTCTGTACGGAAACCATCTCTCTGGTACTGTCCCTCAAAG 1235
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1197 TTCTCAGCTGAGAAGACTTCTTCTGTACGGAAACCATCTCTCTGGTACGGTTCCTCAAAG 1256
Query 1236 CCTCGGCAAATGTATCAATCTTGAGATTCTTGATCTCTCTCACAACAACCTCACAGGGAC 1295
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 CCTCGGAAAATGTATCAATCTTGAGATTCTTGATCTCTCTCACAACAACCTCTCAGGGAA 1316
Query 1296 CATACCTGTTGAAGTTGTCTCCAATCTCAGAAACCTGAAGCTGTATCTCAACCTCTCTAG 1355
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1317 CATACCTGTTGAAGTTGTCTCCAATCTCAGAAACCTGAAGCTGTATCTTAACCTCTCTAG 1376
Query 1356 CAACCACTTAAGCGGTCCAATACCTTTGGAGCTAAGCAAAATGGATATGGTTCTCTCCGT 1415
||| |||||||| || |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1377 CAATCACTTAAGTGGGCCAATACCGTTGGAGCTAAGCAAAATGGATATGGTTCTCTCAGT 1436
Query 1416 TGATCTGTCTTCCAACGAACTCTCAGGGAAGATTCCGCCTCAGCTCGGAAGCTGCATTGC 1475
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1437 TGATCTTTCTTCCAACGAACTCTCAGGAAAGATTCCGCCTCAGCTCGGAAGCTGCATTGC 1496
Query 1476 ATTAGAGCATCTGAATCTTTCAAGAAACGGTTTCTCCAGTACGCTTCCTTCATCATTAGG 1535
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1497 ATTAGAGCATTTGAATCTTTCAAGAAACAGTTTCTCCAGTACGCTTCCTGCATCATTAGG 1556
Query 1536 CCAACTT-CCATATCTGAAAGAGCTAGATGTGTCTTTTAACAGATTAACCGGAGCTATAC 1594
|||| || ||||||||||||||||||||||| |||| |||||||||| |||||||||||
Sbjct 1557 CCAA-TTGCCATATCTGAAAGAGCTAGATGTATCTTCAAACAGATTAAACGGAGCTATAC 1615
Query 1595 CGCCTTCTTTTCAACAGTCTTCGACTCTCAAGCACTTGAATTTCTCCTTCAACTTGCTCT 1654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1616 CGCCTTCTTTTCAACAGTCTTCGACTCTCAAGCACTTGAATTTCTCCTTCAACTTGTTCT 1675
Query 1655 CTGGTAATGTATCTGACAAAGGATCATTCTCTAAGCTGACTATTGAGTCTTTTCTTGGAG 1714
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CTGGAAATGTATCTGACAAAGGATCATTCTCTAAGCTGACTATTGAGTCTTTTCTTGGAG 1735
Query 1715 ATTCTCTCTTGTGTGGCTCTATAAAAGGCATGCAAGCCTGCAAGAAGAAACACAAGTACC 1774
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1736 ATTCTCTCTTGTGTGGCTCTATAAAAGGGATGCAAGCTTGCAAGAAGAAACACAAGTACC 1795
Query 1775 CTTCTGTTCTTCTACCGGTTCTGTTATCGTTGATCGCAACTCCTGTTCTGTGTGTGTTCG 1834
|||||||| ||||||||||||||||||| ||||| | ||||||| |||||||||| || |
Sbjct 1796 CTTCTGTTATTCTACCGGTTCTGTTATCATTGATTGTAACTCCTTTTCTGTGTGTTTTTG 1855
Query 1835 GGTACCCTTTGGTCCAAAGATCAAGATTTGGAAAGAATCTAACAGTGTATGCCAAAGAAG 1894
|||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1856 GGTACCCTCTGGTCCAAAGATCAAGATTTGGAAAGAATCTAACAGTTTATGACAAAGAAG 1915
Query 1895 AGGTGGAAGACGAGGAAAAACAGAACCAAAATGACCCGAAGTACCCGAGAATATCGTATC 1954
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1916 AGGTGGAAGACGAAGAAAAACAGAACCGAAATGACCCGAAGTACCCGAGAATATCGTATC 1975
Query 1955 AGCAGCTCATAGCAGCTACTGGAGGTTTCAATGCTTCTAGCTTGATTGGTTCAGGGAGAT 2014
| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 AACAGCTCATAACAGCAACTGGAGGTTTCAATGCTTCTAGCTTGATTGGTTCAGGGAGAT 2035
Query 2015 TTGGTCATGTTTATAAGGGAGTTCTCAGAAACAACACGAAGGTCGCGGTAAAAGTACTTG 2074
||||||||||||| |||||||||||||| |||||||| ||| | || || ||||||||||
Sbjct 2036 TTGGTCATGTTTACAAGGGAGTTCTCAGGAACAACACTAAGATTGCAGTTAAAGTACTTG 2095
Query 2075 ATCCAAAGACCGCACTGGAGTTCTCGGGGAGTTTCAAAAGAGAATGTCAGATCTTGAAGA 2134
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2096 ATCCAAAGACCGCAGTGGAGTTTTCGGGGAGTTTCAAAAGAGAATGTCAGATCTTGAAGC 2155
Query 2135 GAACAAGACACAGGAACTTGATCAGGATCATCACTACGTGCAGCAAACCTGGTTTCAACG 2194
| ||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 2156 GGACAAGGCACAGGAACTTGATCAGGATCATCACAACTTGCAGAAAACCTGGTTTCAAGG 2215
Query 2195 CTCTTGTTCTGCCACTGATGCCAAATGGAAGCTTGGAGAGGCACTTATACCCGGGAGAGT 2254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 CTCTTGTTCTGCCACTGATGCCAAATGGAAGCTTGGAGAGGCACTTATACCCGGGAGAGT 2275
Query 2255 ACTCGAGCAAGAACTTAGATTTGATTCAGTTGGTGA-ATATATGCAGCGATGTTGCTGAA 2313
||| |||||||||||| ||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 2276 ACTTGAGCAAGAACTTGGATTTGATTCAGTTGGT-ATATATATGCAGCGATGTCGCTGAA 2334
Query 2314 GGAATAGCTTACTTGCATCACTATTCACCTGTAAAAGTTGTTCACTGTGATCTCAAACCG 2373
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2335 GGAATAGCTTACTTGCATCACTATTCACCTGTCAAAGTCATTCACTGTGATCTCAAACCG 2394
Query 2374 AGCAATATCCTTCTTGATGATGAAATGACCGCTCTGGTTACGGATTTTGGGATTTCAAGA 2433
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2395 AGCAATATCCTTCTCGACGATGAAATGACGGCTCTGGTTACGGATTTCGGGATTTCAAGA 2454
Query 2434 TTGGTTCAAGGTGTTGAAGAAACAGTTTCTACAGATGATTCAGTGTCATTTGGCTCAACA 2493
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2455 TTAGTTCAAGGCGTTGAAGAAACGGTTTCTACAGATGATTCAGTGTCATTTGGCTCAACA 2514
Query 2494 GATGGATTGTTATGTGGATCAGTCGGTTACATTGCACCAGAATACGGGATGGGGAAACGC 2553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 GATGGATTGTTATGTGGATCAGTCGGTTACATTGCACCAGAATACGGGATGGGGAAACGC 2574
Query 2554 GCATCGACACATGGAGATGTGTACAGTTTTGGTGTTCTCCTGCTAGAGATTGTAAGCGGA 2613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2575 GCATCGACACATGGAGATGTGTACAGTTTTGGTGTTCTCCTGCTAGAGATTGTAAGCGGA 2634
Query 2614 AGGAGACCAACAGATGTTCTTGTCAATGAAGGTTCAAGCTTACATGAGTTTATGAAGTCG 2673
||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2635 AGGAGACCAACGGATGTTCTTGTCAATGAAGGATCAAACTTACATGAGTTTATGAAGTCA 2694
Query 2674 CATTACCCCGA-TTCTCTAGAGGGAATCATCGAACAAGCGTTGAGT-AGATGGAAACCGC 2731
|||||||| || ||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 2695 CATTACCC-GAATTCTCTAGAGGAAATCATCGAACAAGCGTTGA-TCAGATGGAAACCGC 2752
Query 2732 AAGGGAAACCAGAAAAATGTGAGAAGCTATGGAGAGAAGTCATATTGGAAATGATTGAGT 2791
| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2753 AGGGGAAACCAGAGAGATGTGAGAAGCTATGGAGAGAAGTCATATTGGAAATGATTGAGT 2812
Query 2792 TAGGATTGGTATGTACTCAATACAATCCTTCAACTAGGCCTGACATGCTTGATGTCGCAC 2851
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2813 TAGGATTGATATGTACTCAATACAATCCTTCAACTAGGCCTGACATGCTCGATGTCGCAC 2872
Query 2852 ACGAAATGGGACGGCTTAAAGAATATTTATTTGCTTGTCCTTCTCTATTGCATTTTTCAT 2911
|||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 2873 ACGAGATGGGACGGCTTAAAGAGTATCTATTTGCTTGTCCTTCTCTTTTGCATTTTTCAT 2932
Query 2912 CTCAAGAAACACAAGGAGAAGCTAGTTCATAA 2943
||||||||||||||||||||||||||||||||
Sbjct 2933 CTCAAGAAACACAAGGAGAAGCTAGTTCATAA 2964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111109244665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5